Result of FASTA (omim) for
pFN21AB8101
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8101, 447 aa
1>>>pF1KB8101 447 - 447 aa - 447 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2393+/-0.000455; mu= 17.7572+/- 0.028
mean_var=65.8199+/-12.959, 0's: 0 Z-trim(109.0): 37 B-trim: 0 in 0/53
Lambda= 0.158087
statistics sampled from 17089 (17115) to 17089 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.566), E-opt: 0.2 (0.201), width: 16
Scan time: 6.180
The best scores are: opt bits E(85289)
NP_001484 (OMIM: 300104,300849) rab GDP dissociati ( 447) 2986 690.4 2.5e-198
NP_001485 (OMIM: 600767) rab GDP dissociation inhi ( 445) 2642 612.0 1e-174
XP_016871560 (OMIM: 600767) PREDICTED: rab GDP dis ( 423) 2507 581.2 1.8e-165
NP_001108628 (OMIM: 600767) rab GDP dissociation i ( 400) 1864 434.5 2.4e-121
NP_001812 (OMIM: 118825) rab proteins geranylgeran ( 656) 435 108.7 4.7e-23
XP_016884732 (OMIM: 300390,303100) PREDICTED: rab ( 505) 399 100.4 1.1e-20
XP_016884735 (OMIM: 300390,303100) PREDICTED: rab ( 505) 399 100.4 1.1e-20
NP_001307888 (OMIM: 300390,303100) rab proteins ge ( 505) 399 100.4 1.1e-20
XP_016884734 (OMIM: 300390,303100) PREDICTED: rab ( 505) 399 100.4 1.1e-20
XP_016884733 (OMIM: 300390,303100) PREDICTED: rab ( 505) 399 100.4 1.1e-20
XP_016884731 (OMIM: 300390,303100) PREDICTED: rab ( 602) 399 100.5 1.3e-20
NP_000381 (OMIM: 300390,303100) rab proteins geran ( 653) 399 100.5 1.4e-20
NP_001138886 (OMIM: 300390,303100) rab proteins ge ( 110) 154 44.2 0.00021
>>NP_001484 (OMIM: 300104,300849) rab GDP dissociation i (447 aa)
initn: 2986 init1: 2986 opt: 2986 Z-score: 3681.8 bits: 690.4 E(85289): 2.5e-198
Smith-Waterman score: 2986; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)
10 20 30 40 50 60
pF1KB8 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
370 380 390 400 410 420
430 440
pF1KB8 YKRMAGTAFDFENMKRKQNDVFGEAEQ
:::::::::::::::::::::::::::
NP_001 YKRMAGTAFDFENMKRKQNDVFGEAEQ
430 440
>>NP_001485 (OMIM: 600767) rab GDP dissociation inhibito (445 aa)
initn: 2642 init1: 2642 opt: 2642 Z-score: 3257.8 bits: 612.0 E(85289): 1e-174
Smith-Waterman score: 2642; 86.5% identity (96.8% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KB8 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
:.:::::::::::::::::::::::::::::::::::::::::.::::::.:::::..
NP_001 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
.:::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_001 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
:::.:::::.:::.:::::::::::.::::::.::.::::.::. :.:::::.:::::::
NP_001 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
:::::::::::::::::::::: ::.::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
::::::::::::::...::..::::.:::::::.::::::::::::. :::.:.:::::.
NP_001 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
::::::::::::::::::::::::::::::::::::::.:::::::::::::.::::::
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
.::::..:::::::::.::::.:::: : : : :::.: : .:::::::::::.:::.:
NP_001 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
370 380 390 400 410 420
430 440
pF1KB8 YKRMAGTAFDFENMKRKQNDVFGEAEQ
::::.:. ::::.::::.::..::
NP_001 YKRMTGSEFDFEEMKRKKNDIYGED
430 440
>>XP_016871560 (OMIM: 600767) PREDICTED: rab GDP dissoci (423 aa)
initn: 2507 init1: 2507 opt: 2507 Z-score: 3091.7 bits: 581.2 E(85289): 1.8e-165
Smith-Waterman score: 2507; 86.0% identity (96.7% similar) in 422 aa overlap (23-444:1-422)
10 20 30 40 50 60
pF1KB8 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
:::::::::::::::::::::.::::::.:::::..
XP_016 MSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
10 20 30
70 80 90 100 110 120
pF1KB8 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
.:::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_016 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
:::.:::::.:::.:::::::::::.::::::.::.::::.::. :.:::::.:::::::
XP_016 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
:::::::::::::::::::::: ::.::::::::::::::::::::::::::::::::::
XP_016 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
::::::::::::::...::..::::.:::::::.::::::::::::. :::.:.:::::.
XP_016 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
::::::::::::::::::::::::::::::::::::::.:::::::::::::.::::::
XP_016 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB8 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
.::::..:::::::::.::::.:::: : : : :::.: : .:::::::::::.:::.:
XP_016 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
340 350 360 370 380 390
430 440
pF1KB8 YKRMAGTAFDFENMKRKQNDVFGEAEQ
::::.:. ::::.::::.::..::
XP_016 YKRMTGSEFDFEEMKRKKNDIYGED
400 410 420
>>NP_001108628 (OMIM: 600767) rab GDP dissociation inhib (400 aa)
initn: 1862 init1: 1862 opt: 1864 Z-score: 2299.5 bits: 434.5 E(85289): 2.4e-121
Smith-Waterman score: 2281; 77.0% identity (86.7% similar) in 444 aa overlap (1-444:1-399)
10 20 30 40 50 60
pF1KB8 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
:.:::::::::::::::::::::::::::::::::::::::::.::::::.:::::..
NP_001 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
.::::::::::::::::::::::::
NP_001 SPPESMGRGRDWNVDLIPKFLMANG-----------------------------------
70 80
130 140 150 160 170 180
pF1KB8 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
:::.:::::::::::.::::::.::.::::.::. :.:::::.:::::::
NP_001 ----------LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
90 100 110 120 130
190 200 210 220 230 240
pF1KB8 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
:::::::::::::::::::::: ::.::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB8 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
::::::::::::::...::..::::.:::::::.::::::::::::. :::.:.:::::.
NP_001 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB8 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
::::::::::::::::::::::::::::::::::::::.:::::::::::::.::::::
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB8 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
.::::..:::::::::.::::.:::: : : : :::.: : .:::::::::::.:::.:
NP_001 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
320 330 340 350 360 370
430 440
pF1KB8 YKRMAGTAFDFENMKRKQNDVFGEAEQ
::::.:. ::::.::::.::..::
NP_001 YKRMTGSEFDFEEMKRKKNDIYGED
380 390 400
>>NP_001812 (OMIM: 118825) rab proteins geranylgeranyltr (656 aa)
initn: 456 init1: 213 opt: 435 Z-score: 534.9 bits: 108.7 E(85289): 4.7e-23
Smith-Waterman score: 435; 25.1% identity (60.4% similar) in 331 aa overlap (69-389:226-546)
40 50 60 70 80 90
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
:: .:.::. :.:...: :. .:. ..:.:
NP_001 GDKDESKSTVEDKADEPIRNRITYSQIVKEGRRFNIDLVSKLLYSQGLLIDLLIKSDVSR
200 210 220 230 240 250
100 110 120 130 140 150
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
:..:: : .... ::. .:: ...... :. . : ::: . :::.: ..... : .
NP_001 YVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQH-PDEY
260 270 280 290 300 310
160 170 180 190 200 210
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPC--LETVNRIKLYSESL
.. . :. . . : .. :. :..:. .. : .. .: : . . :
NP_001 QAF--RQCSFSEYLKTKKLTPNLQHFVLHSIAMTS-----ESSCTTIDGLNATKNFLQCL
320 330 340 350 360
220 230 240 250 260 270
pF1KB8 ARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GE
.:.:..:.:.:::: ::.:::: :. :..:: : : . :. ... :.:. .. .. :.
NP_001 GRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQ
370 380 390 400 410 420
280 290 300 310 320
pF1KB8 VARCKQLICDPSYIPDRV---RKAGQVIRIICILSHPIKNTN-DANSCQIIIPQNQVNRK
: .: . ::. ... . :. : . : .. : .:. : .. .:.: . .
NP_001 RINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIVPPAEPG-A
430 440 450 460 470 480
330 340 350 360 370 380
pF1KB8 SDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALE-LLEPIDQKFVAISDLYE
. : . . . . :. . : . ....: ... :. : . . .: .
NP_001 CAVRVTELCSSTMTCMKDTYL-VHLTCSSSKTAREDLESVVKKLFTPYTETEINEEELTK
490 500 510 520 530 540
390 400 410 420 430 440
pF1KB8 PIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ
:
NP_001 PRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEIFPTEE
550 560 570 580 590 600
>>XP_016884732 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa)
initn: 362 init1: 203 opt: 399 Z-score: 492.2 bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)
40 50 60 70 80 90
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
:: .:.::. :.:.. : :. .:. ..:.:
XP_016 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
50 60 70 80 90 100
100 110 120 130 140 150
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
: .:: . .... :.. .:: ...... :. . : ::: . :::.: .. :. : .
XP_016 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
.: . : . . . : .. .. :..:. . . .. .. : . . :.:
XP_016 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
170 180 190 200 210
220 230 240 250 260 270
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
::..:.:.:::: ::::: : :. :..:: : : . :. ... :. : .. .. :.
XP_016 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
.... . ::.:. :: . :. : . : .. . .:.. .. .:. .: .. . .
XP_016 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
280 290 300 310 320 330
340 350 360 370 380
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
. : . . . .: :.. . : : : : :: . :: :: ...
XP_016 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
340 350 360 370 380
390 400 410 420 430 440
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ
XP_016 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
390 400 410 420 430 440
>>XP_016884735 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa)
initn: 362 init1: 203 opt: 399 Z-score: 492.2 bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)
40 50 60 70 80 90
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
:: .:.::. :.:.. : :. .:. ..:.:
XP_016 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
50 60 70 80 90 100
100 110 120 130 140 150
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
: .:: . .... :.. .:: ...... :. . : ::: . :::.: .. :. : .
XP_016 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
.: . : . . . : .. .. :..:. . . .. .. : . . :.:
XP_016 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
170 180 190 200 210
220 230 240 250 260 270
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
::..:.:.:::: ::::: : :. :..:: : : . :. ... :. : .. .. :.
XP_016 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
.... . ::.:. :: . :. : . : .. . .:.. .. .:. .: .. . .
XP_016 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
280 290 300 310 320 330
340 350 360 370 380
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
. : . . . .: :.. . : : : : :: . :: :: ...
XP_016 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
340 350 360 370 380
390 400 410 420 430 440
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ
XP_016 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
390 400 410 420 430 440
>>NP_001307888 (OMIM: 300390,303100) rab proteins gerany (505 aa)
initn: 362 init1: 203 opt: 399 Z-score: 492.2 bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)
40 50 60 70 80 90
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
:: .:.::. :.:.. : :. .:. ..:.:
NP_001 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
50 60 70 80 90 100
100 110 120 130 140 150
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
: .:: . .... :.. .:: ...... :. . : ::: . :::.: .. :. : .
NP_001 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
.: . : . . . : .. .. :..:. . . .. .. : . . :.:
NP_001 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
170 180 190 200 210
220 230 240 250 260 270
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
::..:.:.:::: ::::: : :. :..:: : : . :. ... :. : .. .. :.
NP_001 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
.... . ::.:. :: . :. : . : .. . .:.. .. .:. .: .. . .
NP_001 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
280 290 300 310 320 330
340 350 360 370 380
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
. : . . . .: :.. . : : : : :: . :: :: ...
NP_001 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
340 350 360 370 380
390 400 410 420 430 440
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ
NP_001 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
390 400 410 420 430 440
>>XP_016884734 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa)
initn: 362 init1: 203 opt: 399 Z-score: 492.2 bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)
40 50 60 70 80 90
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
:: .:.::. :.:.. : :. .:. ..:.:
XP_016 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
50 60 70 80 90 100
100 110 120 130 140 150
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
: .:: . .... :.. .:: ...... :. . : ::: . :::.: .. :. : .
XP_016 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
.: . : . . . : .. .. :..:. . . .. .. : . . :.:
XP_016 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
170 180 190 200 210
220 230 240 250 260 270
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
::..:.:.:::: ::::: : :. :..:: : : . :. ... :. : .. .. :.
XP_016 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
.... . ::.:. :: . :. : . : .. . .:.. .. .:. .: .. . .
XP_016 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
280 290 300 310 320 330
340 350 360 370 380
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
. : . . . .: :.. . : : : : :: . :: :: ...
XP_016 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
340 350 360 370 380
390 400 410 420 430 440
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ
XP_016 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
390 400 410 420 430 440
>>XP_016884733 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa)
initn: 362 init1: 203 opt: 399 Z-score: 492.2 bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)
40 50 60 70 80 90
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
:: .:.::. :.:.. : :. .:. ..:.:
XP_016 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
50 60 70 80 90 100
100 110 120 130 140 150
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
: .:: . .... :.. .:: ...... :. . : ::: . :::.: .. :. : .
XP_016 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
.: . : . . . : .. .. :..:. . . .. .. : . . :.:
XP_016 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
170 180 190 200 210
220 230 240 250 260 270
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
::..:.:.:::: ::::: : :. :..:: : : . :. ... :. : .. .. :.
XP_016 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
.... . ::.:. :: . :. : . : .. . .:.. .. .:. .: .. . .
XP_016 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
280 290 300 310 320 330
340 350 360 370 380
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
. : . . . .: :.. . : : : : :: . :: :: ...
XP_016 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
340 350 360 370 380
390 400 410 420 430 440
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ
XP_016 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
390 400 410 420 430 440
447 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:28:18 2016 done: Fri Nov 4 09:28:19 2016
Total Scan time: 6.180 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]