Result of FASTA (omim) for
pFN21AB7621
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7621, 313 aa
1>>>pF1KB7621 313 - 313 aa - 313 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3267+/-0.000375; mu= -1.8846+/- 0.024
mean_var=441.0163+/-88.307, 0's: 0 Z-trim(126.3): 144 B-trim: 0 in 0/61
Lambda= 0.061073
statistics sampled from 51779 (51952) to 51779 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.609), width: 16
Scan time: 7.770
The best scores are: opt bits E(85289)
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 2189 205.9 8.5e-53
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 2157 203.1 6.1e-52
XP_011533179 (OMIM: 600297) PREDICTED: homeobox pr ( 273) 1593 153.4 5e-37
XP_011533178 (OMIM: 600297) PREDICTED: homeobox pr ( 281) 1567 151.1 2.5e-36
XP_011533180 (OMIM: 600297) PREDICTED: homeobox pr ( 204) 923 94.2 2.5e-19
XP_011533181 (OMIM: 600297) PREDICTED: homeobox pr ( 196) 906 92.6 6.8e-19
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 584 64.4 2.8e-10
NP_005184 (OMIM: 300025) homeobox protein CDX-4 [H ( 284) 453 52.9 8.9e-07
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 368 45.5 0.00017
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 334 42.4 0.0012
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 334 42.4 0.0012
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 334 42.7 0.0017
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 334 42.7 0.0017
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 334 42.7 0.0017
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 334 42.7 0.0017
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 334 42.7 0.0017
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 334 42.7 0.0017
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 334 42.7 0.0017
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 334 42.7 0.0017
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 322 41.4 0.0027
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 319 41.1 0.0032
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 313 40.6 0.0044
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 309 40.1 0.005
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 309 40.1 0.005
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 309 40.1 0.005
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 308 40.2 0.0068
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 305 39.8 0.0069
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 304 39.9 0.0088
>>NP_001256 (OMIM: 600297) homeobox protein CDX-2 [Homo (313 aa)
initn: 2189 init1: 2189 opt: 2189 Z-score: 1068.9 bits: 205.9 E(85289): 8.5e-53
Smith-Waterman score: 2189; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)
10 20 30 40 50 60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVL
250 260 270 280 290 300
310
pF1KB7 GPTGGVLNPTVTQ
:::::::::::::
NP_001 GPTGGVLNPTVTQ
310
>>XP_011533177 (OMIM: 600297) PREDICTED: homeobox protei (321 aa)
initn: 1597 init1: 1288 opt: 2157 Z-score: 1053.5 bits: 203.1 E(85289): 6.1e-52
Smith-Waterman score: 2157; 97.2% identity (97.2% similar) in 321 aa overlap (1-313:1-321)
10 20 30 40 50 60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 --------VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALTSPSSTVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
250 260 270 280 290 300
300 310
pF1KB7 SGSVPGVLGPTGGVLNPTVTQ
::::::::::::::::::::
XP_011 PGSVPGVLGPTGGVLNPTVTQ
310 320
>>XP_011533179 (OMIM: 600297) PREDICTED: homeobox protei (273 aa)
initn: 1586 init1: 1586 opt: 1593 Z-score: 785.7 bits: 153.4 E(85289): 5e-37
Smith-Waterman score: 1593; 95.9% identity (97.5% similar) in 243 aa overlap (1-243:1-240)
10 20 30 40 50 60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
:::::::::::::::::::::::::::::::::::::::::::::::: .: : : :.
XP_011 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSER-LKSGF--RTAE
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVL
.:.
XP_011 QRRGKSTRRSCSSNSSSSHHSRLRRHHSLPSLSQVL
240 250 260 270
>>XP_011533178 (OMIM: 600297) PREDICTED: homeobox protei (281 aa)
initn: 1478 init1: 1288 opt: 1567 Z-score: 773.2 bits: 151.1 E(85289): 2.5e-36
Smith-Waterman score: 1567; 92.8% identity (94.4% similar) in 251 aa overlap (1-243:1-248)
10 20 30 40 50 60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 --------VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
:::::::::::::::::::::::::::::::::::::::::::::::: .:
XP_011 ALTSPSSTVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSER-LKS
190 200 210 220 230
240 250 260 270 280 290
pF1KB7 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
: : :..:.
XP_011 GF--RTAEQRRGKSTRRSCSSNSSSSHHSRLRRHHSLPSLSQVL
240 250 260 270 280
>>XP_011533180 (OMIM: 600297) PREDICTED: homeobox protei (204 aa)
initn: 904 init1: 904 opt: 923 Z-score: 468.1 bits: 94.2 E(85289): 2.5e-19
Smith-Waterman score: 923; 89.2% identity (91.8% similar) in 158 aa overlap (157-313:47-204)
130 140 150 160 170 180
pF1KB7 AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP-AQQSLGSQVKTRT
::::. . : :. : : .: :::::
XP_011 YSQLQLYKSKRPLGAVSGHRFLRHCAHARESPGGNAADRGEGHRSASALTSPSSTVKTRT
20 30 40 50 60 70
190 200 210 220 230 240
pF1KB7 KDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKIN
80 90 100 110 120 130
250 260 270 280 290 300
pF1KB7 KKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVLGPTGG
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
XP_011 KKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGG
140 150 160 170 180 190
310
pF1KB7 VLNPTVTQ
::::::::
XP_011 VLNPTVTQ
200
>>XP_011533181 (OMIM: 600297) PREDICTED: homeobox protei (196 aa)
initn: 898 init1: 898 opt: 906 Z-score: 460.2 bits: 92.6 E(85289): 6.8e-19
Smith-Waterman score: 906; 87.9% identity (91.1% similar) in 157 aa overlap (157-313:47-196)
130 140 150 160 170 180
pF1KB7 AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTK
::::. . : :. ..::::::
XP_011 YSQLQLYKSKRPLGAVSGHRFLRHCAHARESPGGNAADRGEGHRS-------ASVKTRTK
20 30 40 50 60
190 200 210 220 230 240
pF1KB7 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK
70 80 90 100 110 120
250 260 270 280 290 300
pF1KB7 KKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVLGPTGGV
:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_011 KKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGV
130 140 150 160 170 180
310
pF1KB7 LNPTVTQ
:::::::
XP_011 LNPTVTQ
190
>>NP_001795 (OMIM: 600746) homeobox protein CDX-1 [Homo (265 aa)
initn: 549 init1: 485 opt: 584 Z-score: 305.4 bits: 64.4 E(85289): 2.8e-10
Smith-Waterman score: 744; 49.3% identity (64.9% similar) in 282 aa overlap (1-274:1-238)
10 20 30 40 50
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN
:::.:.:::: .::. .: .. :.:.:: . .::::::...: ..
NP_001 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
.. : .: .: : . :: ..:: . :.:: :: :: :::. .... : :.
NP_001 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAA----------SPAS-LAFGPPPDF
60 70 80 90
120 130 140 150 160 170
pF1KB7 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP-
: : :. .: ::: :: :. :::.:: . ::::.
NP_001 SPVPAP------PGPGP----GLLAQPLGGPGTPS--------SPGAQRPTPYEWMRRSV
100 110 120 130 140
180 190 200 210 220 230
pF1KB7 AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
: . :.. :::::::::::::::::::::::::::::::::::.::::.:::.::::::
NP_001 AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB7 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
:::::::::::.:::: :::::::::: : ::
NP_001 WFQNRRAKERKVNKKK---QQQQQPPQPPMAHDITATPA-GPSLGGLCPSNTSLLATSSP
210 220 230 240 250
300 310
pF1KB7 SGSVPGVLGPTGGVLNPTVTQ
NP_001 MPVKEEFLP
260
>>NP_005184 (OMIM: 300025) homeobox protein CDX-4 [Homo (284 aa)
initn: 551 init1: 384 opt: 453 Z-score: 242.7 bits: 52.9 E(85289): 8.9e-07
Smith-Waterman score: 549; 39.9% identity (62.7% similar) in 303 aa overlap (1-293:1-283)
10 20 30 40 50 60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
:: : ::.:...:::... :: . : . .. : . . . ::: : . . .
NP_005 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSP-MPASNFAAAPAFSHYMGYPHM
10 20 30 40 50
70 80 90 100 110
pF1KB7 PG--PSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
:. : ::. ..:.: ::::. : :: ... ... .. ... :::: . : .::
NP_005 PSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPAA---FCS-TDY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPA
. : .. :. :.: .: : : ::. ::. .:.. :::: .
NP_005 S-NLGPVGGGTSGSSLPGQAGG---SLVPTDAG-----AAKASSPSRSRHSPYAWMRKTV
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 QQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIW
: . : :::::.::::::::::::::::::: .:::::.::.:::..:::::::::::
NP_005 QVT-G---KTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIW
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB7 FQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPL---SPVSSLQA
::::::::::. :::..: ... : :. . ..: . .:. :.
NP_005 FQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQV
230 240 250 260 270 280
300 310
pF1KB7 SVSGSVPGVLGPTGGVLNPTVTQ
::
NP_005 IVSE
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 314 init1: 275 opt: 368 Z-score: 201.6 bits: 45.5 E(85289): 0.00017
Smith-Waterman score: 377; 32.5% identity (53.9% similar) in 271 aa overlap (20-283:62-319)
10 20 30 40
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAA
:.:: . : :. .: .::
NP_002 ADGGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGG-GREPTASYYAPRTAREPAYPAAALY
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB7 AAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSS
: . :.: : :. : : . : : :.. ::::.. . .. .
NP_002 PAHGAADTAYPYGYRGGASPGRPPQ-------PEQPPAQAKGPAHGLHA---SHVLQPQL
100 110 120 130 140
110 120 130 140 150 160
pF1KB7 PADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWM
: .:. : :.. ::: :. . . . .: : : :. :.. . ::
NP_002 PPPLQPRAVPPAAPRRCEAAP--ATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWM
150 160 170 180 190
170 180 190 200 210 220
pF1KB7 RKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQ
.: .... . . . :..:: .: ::::::::..::.: ::. :.: :: :::::
NP_002 KKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB7 VKIWFQNRRAKERKINK---KKLQQQQQQQPPQPPP--PPPQPPQ--PQPGPLRSVPEPL
::::::::: : .: .: :...... . :: : :. :.: : :.: :
NP_002 VKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPS
260 270 280 290 300 310
290 300 310
pF1KB7 SPVSSLQASVSGSVPGVLGPTGGVLNPTVTQ
:
NP_002 SI
320
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 327 init1: 284 opt: 334 Z-score: 186.4 bits: 42.4 E(85289): 0.0012
Smith-Waterman score: 334; 32.6% identity (58.6% similar) in 181 aa overlap (106-284:74-252)
80 90 100 110 120 130
pF1KB7 DWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAA--APSCA
: .. . : . ::::.. . :.
NP_705 GFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPL
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB7 SGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVY
:: . .:.::. . : . : .... . ::.: .... . . . :..:
NP_705 SGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAY
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB7 TDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQ
: .: :::::::::.::.: ::. :.: .: :::::.:::::::: : .: ..: . .
NP_705 TRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK--DHRLPNTK
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB7 QQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVLGPTGGVLNPTVTQ
.. : : :: .. . .:
NP_705 VRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
230 240 250 260
313 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:00:12 2016 done: Fri Nov 4 09:00:13 2016
Total Scan time: 7.770 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]