Result of FASTA (omim) for
pFN21AB7564
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7564, 275 aa
1>>>pF1KB7564 275 - 275 aa - 275 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5507+/-0.000359; mu= 3.4012+/- 0.022
mean_var=402.5590+/-89.944, 0's: 0 Z-trim(123.2): 1205 B-trim: 0 in 0/58
Lambda= 0.063923
statistics sampled from 40633 (42551) to 40633 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.499), width: 16
Scan time: 8.410
The best scores are: opt bits E(85289)
NP_067043 (OMIM: 122000,616441) transcription fact ( 275) 1906 189.1 7.8e-48
NP_001290391 (OMIM: 122000,616441) transcription f ( 143) 992 104.4 1.3e-22
NP_001290390 (OMIM: 122000,616441) transcription f ( 143) 992 104.4 1.3e-22
NP_004552 (OMIM: 602313) putative transcription fa ( 267) 918 97.9 2.1e-20
XP_016873327 (OMIM: 602313) PREDICTED: putative tr ( 205) 790 86.0 6.4e-17
XP_016873326 (OMIM: 602313) PREDICTED: putative tr ( 205) 790 86.0 6.4e-17
XP_005274075 (OMIM: 602313) PREDICTED: putative tr ( 205) 790 86.0 6.4e-17
XP_011543369 (OMIM: 602313) PREDICTED: putative tr ( 205) 790 86.0 6.4e-17
XP_011543370 (OMIM: 602313) PREDICTED: putative tr ( 205) 790 86.0 6.4e-17
XP_016882679 (OMIM: 616442) PREDICTED: putative tr ( 213) 586 67.2 3e-11
XP_016882680 (OMIM: 616442) PREDICTED: putative tr ( 189) 584 66.9 3.2e-11
NP_001289686 (OMIM: 616442) putative transcription ( 190) 579 66.5 4.4e-11
XP_011525553 (OMIM: 616442) PREDICTED: putative tr ( 116) 294 39.8 0.0027
XP_016862357 (OMIM: 606042) PREDICTED: myoneurin i ( 309) 301 41.1 0.003
XP_016862356 (OMIM: 606042) PREDICTED: myoneurin i ( 337) 301 41.2 0.0031
XP_016862354 (OMIM: 606042) PREDICTED: myoneurin i ( 468) 301 41.4 0.0038
XP_016862355 (OMIM: 606042) PREDICTED: myoneurin i ( 468) 301 41.4 0.0038
XP_005247681 (OMIM: 606042) PREDICTED: myoneurin i ( 496) 301 41.4 0.0039
XP_005247679 (OMIM: 606042) PREDICTED: myoneurin i ( 528) 301 41.5 0.004
NP_001172048 (OMIM: 606042) myoneurin isoform B [H ( 581) 301 41.5 0.0042
XP_005247678 (OMIM: 606042) PREDICTED: myoneurin i ( 582) 301 41.5 0.0042
XP_016862353 (OMIM: 606042) PREDICTED: myoneurin i ( 610) 301 41.6 0.0044
NP_001172047 (OMIM: 606042) myoneurin isoform A [H ( 610) 301 41.6 0.0044
XP_011511289 (OMIM: 606042) PREDICTED: myoneurin i ( 610) 301 41.6 0.0044
NP_061127 (OMIM: 606042) myoneurin isoform A [Homo ( 610) 301 41.6 0.0044
XP_011524212 (OMIM: 610974) PREDICTED: zinc finger (1218) 299 41.8 0.0072
XP_011524211 (OMIM: 610974) PREDICTED: zinc finger (1310) 299 41.9 0.0075
NP_056276 (OMIM: 610974) zinc finger protein 521 i (1311) 299 41.9 0.0075
NP_660334 (OMIM: 616238) zinc finger and BTB domai ( 765) 294 41.1 0.0077
NP_001317554 (OMIM: 616238) zinc finger and BTB do ( 765) 294 41.1 0.0077
NP_597701 (OMIM: 614387) zinc finger protein 526 [ ( 670) 289 40.5 0.0099
NP_001300962 (OMIM: 614387) zinc finger protein 52 ( 670) 289 40.5 0.0099
>>NP_067043 (OMIM: 122000,616441) transcription factor O (275 aa)
initn: 1906 init1: 1906 opt: 1906 Z-score: 979.8 bits: 189.1 E(85289): 7.8e-48
Smith-Waterman score: 1906; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KB7 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SAGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQRPVARSKIKFTTGTCSDSVVHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 SAGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQRPVARSKIKFTTGTCSDSVVHS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 CDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCNVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 CDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCNVC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 NKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 NKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHPGS
190 200 210 220 230 240
250 260 270
pF1KB7 SFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
:::::::::::::::::::::::::::::::::::
NP_067 SFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
250 260 270
>>NP_001290391 (OMIM: 122000,616441) transcription facto (143 aa)
initn: 992 init1: 992 opt: 992 Z-score: 527.0 bits: 104.4 E(85289): 1.3e-22
Smith-Waterman score: 992; 100.0% identity (100.0% similar) in 143 aa overlap (133-275:1-143)
110 120 130 140 150 160
pF1KB7 RSKIKFTTGTCSDSVVHSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDL
::::::::::::::::::::::::::::::
NP_001 MLNRHLKCHNQVKRHLCTFCGKGFNDTFDL
10 20 30
170 180 190 200 210 220
pF1KB7 KRHVRTHTGIRPYKCNVCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRHVRTHTGIRPYKCNVCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYT
40 50 60 70 80 90
230 240 250 260 270
pF1KB7 GPTQEDLYLHVNSAHPGSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPTQEDLYLHVNSAHPGSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
100 110 120 130 140
>>NP_001290390 (OMIM: 122000,616441) transcription facto (143 aa)
initn: 992 init1: 992 opt: 992 Z-score: 527.0 bits: 104.4 E(85289): 1.3e-22
Smith-Waterman score: 992; 100.0% identity (100.0% similar) in 143 aa overlap (133-275:1-143)
110 120 130 140 150 160
pF1KB7 RSKIKFTTGTCSDSVVHSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDL
::::::::::::::::::::::::::::::
NP_001 MLNRHLKCHNQVKRHLCTFCGKGFNDTFDL
10 20 30
170 180 190 200 210 220
pF1KB7 KRHVRTHTGIRPYKCNVCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRHVRTHTGIRPYKCNVCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYT
40 50 60 70 80 90
230 240 250 260 270
pF1KB7 GPTQEDLYLHVNSAHPGSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPTQEDLYLHVNSAHPGSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
100 110 120 130 140
>>NP_004552 (OMIM: 602313) putative transcription factor (267 aa)
initn: 918 init1: 753 opt: 918 Z-score: 487.5 bits: 97.9 E(85289): 2.1e-20
Smith-Waterman score: 918; 52.4% identity (71.6% similar) in 271 aa overlap (1-268:1-267)
10 20 30 40 50 60
pF1KB7 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
::..::::. ... :.:.:::::.:.. :.::.:: ::. : : . :
NP_004 MPRAFLVKKPCVSTCKRNWSELPDEERGEIYVPVSLG---FCPPQPYREPEPSVAEPPSC
10 20 30 40 50
70 80 90 100 110
pF1KB7 SAGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQ---RPVARSKIKFTTGTCSDSV
. . ..:: :: . .: :::. : . :.:.: : : ..
NP_004 PLALNMSLRDSSYSMAPGPCVVAQLPSEDM-GHLTDPQSRDHGFLRTKMKVTLGDSPSGD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 VHSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKC
. .: .: :.: :::::::.::::.:::::::.::::::::::::::::::::.:::::
NP_004 LFTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKC
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 NVCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAH
..:.:::::::::::::::::::::.::::.:: ::::::.:: :. .:: ::.. :
NP_004 SLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHH
180 190 200 210 220 230
240 250 260 270
pF1KB7 PGSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
: : .:.:::::.:. ::. .:: : . :
NP_004 PDSPLLRKTSKKVAVALQNTVTSLLQGSPHL
240 250 260
>>XP_016873327 (OMIM: 602313) PREDICTED: putative transc (205 aa)
initn: 753 init1: 753 opt: 790 Z-score: 424.8 bits: 86.0 E(85289): 6.4e-17
Smith-Waterman score: 790; 62.8% identity (80.0% similar) in 180 aa overlap (92-268:26-205)
70 80 90 100 110
pF1KB7 AGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQ---RPVARSKIKFTTGTCSDSVV
:::. : . :.:.: : : .. .
XP_016 MSLRDSSYSMAPGPCVVAQLPSEDMGHLTDPQSRDHGFLRTKMKVTLGDSPSGDL
10 20 30 40 50
120 130 140 150 160 170
pF1KB7 HSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCN
.: .: :.: :::::::.::::.:::::::.::::::::::::::::::::.:::::.
XP_016 FTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCS
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB7 VCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHP
.:.:::::::::::::::::::::.::::.:: ::::::.:: :. .:: ::.. ::
XP_016 LCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHHP
120 130 140 150 160 170
240 250 260 270
pF1KB7 GSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
: .:.:::::.:. ::. .:: : . :
XP_016 DSPLLRKTSKKVAVALQNTVTSLLQGSPHL
180 190 200
>>XP_016873326 (OMIM: 602313) PREDICTED: putative transc (205 aa)
initn: 753 init1: 753 opt: 790 Z-score: 424.8 bits: 86.0 E(85289): 6.4e-17
Smith-Waterman score: 790; 62.8% identity (80.0% similar) in 180 aa overlap (92-268:26-205)
70 80 90 100 110
pF1KB7 AGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQ---RPVARSKIKFTTGTCSDSVV
:::. : . :.:.: : : .. .
XP_016 MSLRDSSYSMAPGPCVVAQLPSEDMGHLTDPQSRDHGFLRTKMKVTLGDSPSGDL
10 20 30 40 50
120 130 140 150 160 170
pF1KB7 HSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCN
.: .: :.: :::::::.::::.:::::::.::::::::::::::::::::.:::::.
XP_016 FTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCS
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB7 VCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHP
.:.:::::::::::::::::::::.::::.:: ::::::.:: :. .:: ::.. ::
XP_016 LCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHHP
120 130 140 150 160 170
240 250 260 270
pF1KB7 GSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
: .:.:::::.:. ::. .:: : . :
XP_016 DSPLLRKTSKKVAVALQNTVTSLLQGSPHL
180 190 200
>>XP_005274075 (OMIM: 602313) PREDICTED: putative transc (205 aa)
initn: 753 init1: 753 opt: 790 Z-score: 424.8 bits: 86.0 E(85289): 6.4e-17
Smith-Waterman score: 790; 62.8% identity (80.0% similar) in 180 aa overlap (92-268:26-205)
70 80 90 100 110
pF1KB7 AGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQ---RPVARSKIKFTTGTCSDSVV
:::. : . :.:.: : : .. .
XP_005 MSLRDSSYSMAPGPCVVAQLPSEDMGHLTDPQSRDHGFLRTKMKVTLGDSPSGDL
10 20 30 40 50
120 130 140 150 160 170
pF1KB7 HSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCN
.: .: :.: :::::::.::::.:::::::.::::::::::::::::::::.:::::.
XP_005 FTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCS
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB7 VCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHP
.:.:::::::::::::::::::::.::::.:: ::::::.:: :. .:: ::.. ::
XP_005 LCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHHP
120 130 140 150 160 170
240 250 260 270
pF1KB7 GSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
: .:.:::::.:. ::. .:: : . :
XP_005 DSPLLRKTSKKVAVALQNTVTSLLQGSPHL
180 190 200
>>XP_011543369 (OMIM: 602313) PREDICTED: putative transc (205 aa)
initn: 753 init1: 753 opt: 790 Z-score: 424.8 bits: 86.0 E(85289): 6.4e-17
Smith-Waterman score: 790; 62.8% identity (80.0% similar) in 180 aa overlap (92-268:26-205)
70 80 90 100 110
pF1KB7 AGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQ---RPVARSKIKFTTGTCSDSVV
:::. : . :.:.: : : .. .
XP_011 MSLRDSSYSMAPGPCVVAQLPSEDMGHLTDPQSRDHGFLRTKMKVTLGDSPSGDL
10 20 30 40 50
120 130 140 150 160 170
pF1KB7 HSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCN
.: .: :.: :::::::.::::.:::::::.::::::::::::::::::::.:::::.
XP_011 FTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCS
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB7 VCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHP
.:.:::::::::::::::::::::.::::.:: ::::::.:: :. .:: ::.. ::
XP_011 LCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHHP
120 130 140 150 160 170
240 250 260 270
pF1KB7 GSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
: .:.:::::.:. ::. .:: : . :
XP_011 DSPLLRKTSKKVAVALQNTVTSLLQGSPHL
180 190 200
>>XP_011543370 (OMIM: 602313) PREDICTED: putative transc (205 aa)
initn: 753 init1: 753 opt: 790 Z-score: 424.8 bits: 86.0 E(85289): 6.4e-17
Smith-Waterman score: 790; 62.8% identity (80.0% similar) in 180 aa overlap (92-268:26-205)
70 80 90 100 110
pF1KB7 AGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQ---RPVARSKIKFTTGTCSDSVV
:::. : . :.:.: : : .. .
XP_011 MSLRDSSYSMAPGPCVVAQLPSEDMGHLTDPQSRDHGFLRTKMKVTLGDSPSGDL
10 20 30 40 50
120 130 140 150 160 170
pF1KB7 HSCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCN
.: .: :.: :::::::.::::.:::::::.::::::::::::::::::::.:::::.
XP_011 FTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCS
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB7 VCNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHP
.:.:::::::::::::::::::::.::::.:: ::::::.:: :. .:: ::.. ::
XP_011 LCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKEHHP
120 130 140 150 160 170
240 250 260 270
pF1KB7 GSSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
: .:.:::::.:. ::. .:: : . :
XP_011 DSPLLRKTSKKVAVALQNTVTSLLQGSPHL
180 190 200
>>XP_016882679 (OMIM: 616442) PREDICTED: putative transc (213 aa)
initn: 782 init1: 559 opt: 586 Z-score: 322.9 bits: 67.2 E(85289): 3e-11
Smith-Waterman score: 647; 46.2% identity (66.0% similar) in 238 aa overlap (1-237:1-210)
10 20 30 40 50 60
pF1KB7 MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
::..:::. : . .: .:::. :.:.::: : . .. :: .: :
XP_016 MPRAFLVRSRR--PQPPNWGHLPDQLRGDAYIPGGPLTVPGGKGQERRSVTIWLFSSDCS
10 20 30 40 50
70 80 90 100 110
pF1KB7 SAGEPGGAESSSSPHAPESETPEPGD-AEGPDGHLATKQRPVARSKIKFTTGTCSDSVVH
: : : :..::: . : . .: :. . .: : : :: .
XP_016 SLGGPP-AQQSSSVRDPWT-APTQGNLTSAPRG-------P----------GTLG-----
60 70 80 90
120 130 140 150 160 170
pF1KB7 SCDLCGKGFRLQRMLNRHLKCHNQVKRHLCTFCGKGFNDTFDLKRHVRTHTGIRPYKCNV
: :: :.: :::::.::::::. :.:::: :::::.:.::::::.::::::::..:..
XP_016 -CPLCPKAFPLQRMLTRHLKCHSPVRRHLCRCCGKGFHDAFDLKRHMRTHTGIRPFRCSA
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 CNKAFTQRCSLESHLKKIHGVQQQYAYKQRRDKLYVCEDCGYTGPTQEDLYLHVNSAHPG
:.::::::::::.:: :.:: .:::..::.::.::::::.:. .. : : . . :
XP_016 CGKAFTQRCSLEAHLAKVHGQPASYAYRERREKLHVCEDCGFTS-SRPDTYAQHRALHRA
160 170 180 190 200 210
240 250 260 270
pF1KB7 SSFLKKTSKKLAALLQGKLTSAHQENTSLSEEEERK
XP_016 A
275 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:44:18 2016 done: Fri Nov 4 08:44:19 2016
Total Scan time: 8.410 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]