Result of FASTA (ccds) for
pFN21AB7539
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7539, 177 aa
1>>>pF1KB7539 177 - 177 aa - 177 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6894+/-0.000966; mu= 9.1550+/- 0.058
mean_var=207.8953+/-45.170, 0's: 0 Z-trim(112.3): 24 B-trim: 565 in 1/51
Lambda= 0.088951
statistics sampled from 13028 (13046) to 13028 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.401), width: 16
Scan time: 1.700
The best scores are: opt bits E(32554)
CCDS3056.1 CNBP gene_id:7555|Hs108|chr3 ( 177) 1347 184.3 3.3e-47
CCDS46907.1 CNBP gene_id:7555|Hs108|chr3 ( 178) 1335 182.8 9.7e-47
CCDS46906.1 CNBP gene_id:7555|Hs108|chr3 ( 179) 1333 182.5 1.2e-46
CCDS54637.1 CNBP gene_id:7555|Hs108|chr3 ( 170) 1274 174.9 2.1e-44
CCDS46908.1 CNBP gene_id:7555|Hs108|chr3 ( 172) 1260 173.1 7.5e-44
CCDS14425.1 ZCCHC13 gene_id:389874|Hs108|chrX ( 166) 744 106.9 6.3e-24
>>CCDS3056.1 CNBP gene_id:7555|Hs108|chr3 (177 aa)
initn: 1347 init1: 1347 opt: 1347 Z-score: 961.0 bits: 184.3 E(32554): 3.3e-47
Smith-Waterman score: 1347; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>CCDS46907.1 CNBP gene_id:7555|Hs108|chr3 (178 aa)
initn: 987 init1: 812 opt: 1335 Z-score: 952.6 bits: 182.8 E(32554): 9.7e-47
Smith-Waterman score: 1335; 99.4% identity (99.4% similar) in 178 aa overlap (1-177:1-178)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>CCDS46906.1 CNBP gene_id:7555|Hs108|chr3 (179 aa)
initn: 808 init1: 808 opt: 1333 Z-score: 951.2 bits: 182.5 E(32554): 1.2e-46
Smith-Waterman score: 1333; 98.9% identity (98.9% similar) in 179 aa overlap (1-177:1-179)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
:::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
130 140 150 160 170
>>CCDS54637.1 CNBP gene_id:7555|Hs108|chr3 (170 aa)
initn: 1065 init1: 1065 opt: 1274 Z-score: 910.5 bits: 174.9 E(32554): 2.1e-44
Smith-Waterman score: 1274; 96.0% identity (96.0% similar) in 177 aa overlap (1-177:1-170)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS54 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-------FQFVSSSLPDICYRCGES
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
60 70 80 90 100 110
130 140 150 160 170
pF1KB7 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
120 130 140 150 160 170
>>CCDS46908.1 CNBP gene_id:7555|Hs108|chr3 (172 aa)
initn: 1066 init1: 808 opt: 1260 Z-score: 900.8 bits: 173.1 E(32554): 7.5e-44
Smith-Waterman score: 1260; 95.0% identity (95.0% similar) in 179 aa overlap (1-177:1-172)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS46 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-------FQFVSSSLPDICYRCGES
10 20 30 40 50
70 80 90 100 110
pF1KB7 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
:::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
120 130 140 150 160 170
>>CCDS14425.1 ZCCHC13 gene_id:389874|Hs108|chrX (166 aa)
initn: 750 init1: 628 opt: 744 Z-score: 543.1 bits: 106.9 E(32554): 6.3e-24
Smith-Waterman score: 744; 66.4% identity (80.3% similar) in 152 aa overlap (1-152:1-145)
10 20 30 40 50 60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
:::.. : ::.:::::: :: ::. :: :. :.: :: : :..: :: ::::
CCDS14 MSSKDFFACGHSGHWARGCPRGGAGGR--RGGGHG-----RGSQCGSTTLSYTCYCCGES
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
:. ::.: : . ::::::.::::::::.:::::.: ::.::. ::::::::. :::::
CCDS14 GRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCY
60 70 80 90 100 110
130 140 150 160 170
pF1KB7 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
:::..:::::::..:::::::: :::::::::
CCDS14 SCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
120 130 140 150 160
177 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:32:41 2016 done: Fri Nov 4 08:32:41 2016
Total Scan time: 1.700 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]