Result of FASTA (omim) for
pFN21AB7512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7512, 243 aa
1>>>pF1KB7512 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8176+/-0.000291; mu= 6.2828+/- 0.019
mean_var=220.5937+/-51.653, 0's: 0 Z-trim(122.7): 4 B-trim: 2251 in 1/55
Lambda= 0.086353
statistics sampled from 41107 (41127) to 41107 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.482), width: 16
Scan time: 7.810
The best scores are: opt bits E(85289)
NP_778231 (OMIM: 606246) juxtaposed with another z ( 243) 1643 216.3 3.9e-56
XP_016867320 (OMIM: 606246) PREDICTED: juxtaposed ( 179) 1207 161.8 7.1e-40
XP_016867321 (OMIM: 606246) PREDICTED: juxtaposed ( 179) 1207 161.8 7.1e-40
XP_006715719 (OMIM: 606246) PREDICTED: juxtaposed ( 179) 1207 161.8 7.1e-40
>>NP_778231 (OMIM: 606246) juxtaposed with another zinc (243 aa)
initn: 1643 init1: 1643 opt: 1643 Z-score: 1128.8 bits: 216.3 E(85289): 3.9e-56
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB7 MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 INRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 INRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITPSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SFRSSTPTGSEYDEEEVDYEESDSDESWTTESAISSEAILSSMCMNGGEEKPFACPVPGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 SFRSSTPTGSEYDEEEVDYEESDSDESWTTESAISSEAILSSMCMNGGEEKPFACPVPGC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 KKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRK
190 200 210 220 230 240
pF1KB7 MQQ
:::
NP_778 MQQ
>>XP_016867320 (OMIM: 606246) PREDICTED: juxtaposed with (179 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 836.8 bits: 161.8 E(85289): 7.1e-40
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 179 aa overlap (65-243:1-179)
40 50 60 70 80 90
pF1KB7 DNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSR
::::::::::::::::::::::::::::::
XP_016 MTDAARREQESLKKKIQPKLSLTLSSSVSR
10 20 30
100 110 120 130 140 150
pF1KB7 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
100 110 120 130 140 150
220 230 240
pF1KB7 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
:::::::::::::::::::::::::::::
XP_016 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
160 170
>>XP_016867321 (OMIM: 606246) PREDICTED: juxtaposed with (179 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 836.8 bits: 161.8 E(85289): 7.1e-40
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 179 aa overlap (65-243:1-179)
40 50 60 70 80 90
pF1KB7 DNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSR
::::::::::::::::::::::::::::::
XP_016 MTDAARREQESLKKKIQPKLSLTLSSSVSR
10 20 30
100 110 120 130 140 150
pF1KB7 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
100 110 120 130 140 150
220 230 240
pF1KB7 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
:::::::::::::::::::::::::::::
XP_016 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
160 170
>>XP_006715719 (OMIM: 606246) PREDICTED: juxtaposed with (179 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 836.8 bits: 161.8 E(85289): 7.1e-40
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 179 aa overlap (65-243:1-179)
40 50 60 70 80 90
pF1KB7 DNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSR
::::::::::::::::::::::::::::::
XP_006 MTDAARREQESLKKKIQPKLSLTLSSSVSR
10 20 30
100 110 120 130 140 150
pF1KB7 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
100 110 120 130 140 150
220 230 240
pF1KB7 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
:::::::::::::::::::::::::::::
XP_006 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
160 170
243 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:19:34 2016 done: Fri Nov 4 08:19:35 2016
Total Scan time: 7.810 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]