Result of FASTA (omim) for
pFN21AB7449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7449, 188 aa
1>>>pF1KB7449 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7291+/-0.000302; mu= 13.1923+/- 0.019
mean_var=103.7399+/-20.863, 0's: 0 Z-trim(119.9): 28 B-trim: 0 in 0/55
Lambda= 0.125922
statistics sampled from 34521 (34549) to 34521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.405), width: 16
Scan time: 6.110
The best scores are: opt bits E(85289)
NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo ( 188) 1019 194.5 8.4e-50
NP_001265620 (OMIM: 300813,312820) protein SSX1 [H ( 188) 1019 194.5 8.4e-50
NP_783629 (OMIM: 300192,300813) protein SSX2 isofo ( 188) 1015 193.8 1.4e-49
NP_775494 (OMIM: 300542) protein SSX7 [Homo sapien ( 188) 1005 192.0 4.9e-49
NP_066294 (OMIM: 300325) protein SSX3 [Homo sapien ( 188) 985 188.3 6.1e-48
NP_005627 (OMIM: 300326) protein SSX4 isoform a [H ( 188) 967 185.1 5.9e-47
XP_016885248 (OMIM: 300326) PREDICTED: protein SSX ( 188) 967 185.1 5.9e-47
NP_783729 (OMIM: 300327) protein SSX5 isoform b [H ( 188) 961 184.0 1.2e-46
XP_011542251 (OMIM: 300327) PREDICTED: protein SSX ( 188) 961 184.0 1.2e-46
XP_016885247 (OMIM: 300327) PREDICTED: protein SSX ( 188) 961 184.0 1.2e-46
NP_066295 (OMIM: 300327) protein SSX5 isoform a [H ( 229) 878 169.0 5e-42
NP_001265626 (OMIM: 300192,300813) protein SSX2 is ( 214) 806 155.9 4.1e-38
NP_003138 (OMIM: 300192,300813) protein SSX2 isofo ( 223) 806 155.9 4.2e-38
XP_016884919 (OMIM: 300542) PREDICTED: protein SSX ( 223) 789 152.8 3.6e-37
XP_011542187 (OMIM: 300325) PREDICTED: protein SSX ( 170) 771 149.4 2.8e-36
NP_783856 (OMIM: 300326) protein SSX4 isoform b [H ( 153) 529 105.4 4.5e-23
XP_016884920 (OMIM: 300542) PREDICTED: protein SSX ( 129) 526 104.8 5.8e-23
NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894) 190 44.5 0.00056
NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894) 190 44.5 0.00056
XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377) 172 40.9 0.0029
XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492) 172 41.0 0.0035
NP_001091643 (OMIM: 609759) probable histone-lysin ( 492) 172 41.0 0.0035
XP_011521133 (OMIM: 609759) PREDICTED: probable hi ( 172) 160 38.4 0.0074
>>NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo sap (188 aa)
initn: 1051 init1: 1019 opt: 1019 Z-score: 1015.1 bits: 194.5 E(85289): 8.4e-50
Smith-Waterman score: 1019; 81.4% identity (92.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::.::::::::::::::::::::::: ::::.::.:::.::::: :.:::.:.::::
NP_005 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.::: :: ::.::: : :: :::.:: .::.::::::::.::::::::.::::.
NP_005 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.::::: ::::::::::.: :::::. ::::..:::::::::::::::::::::::::::
NP_005 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
NP_005 SDPEEDDE
>>NP_001265620 (OMIM: 300813,312820) protein SSX1 [Homo (188 aa)
initn: 1051 init1: 1019 opt: 1019 Z-score: 1015.1 bits: 194.5 E(85289): 8.4e-50
Smith-Waterman score: 1019; 81.4% identity (92.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::.::::::::::::::::::::::: ::::.::.:::.::::: :.:::.:.::::
NP_001 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.::: :: ::.::: : :: :::.:: .::.::::::::.::::::::.::::.
NP_001 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.::::: ::::::::::.: :::::. ::::..:::::::::::::::::::::::::::
NP_001 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
NP_001 SDPEEDDE
>>NP_783629 (OMIM: 300192,300813) protein SSX2 isoform b (188 aa)
initn: 1084 init1: 1015 opt: 1015 Z-score: 1011.2 bits: 193.8 E(85289): 1.4e-49
Smith-Waterman score: 1015; 80.9% identity (88.8% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.:: :. :: .::::::::::::::::::: :::: :.::::::::::
NP_783 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: :: :::: : : :: ::: ::::.:::::::::::: : :::::.::::::
NP_783 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.::. ::::::::::::.:::::: ..:::::::::::::.:::::::::::::::::::
NP_783 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
NP_783 SDPEEDDE
>>NP_775494 (OMIM: 300542) protein SSX7 [Homo sapiens] (188 aa)
initn: 1037 init1: 1005 opt: 1005 Z-score: 1001.4 bits: 192.0 E(85289): 4.9e-49
Smith-Waterman score: 1005; 79.8% identity (89.9% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.::: :. :: .:.::::::::::.:::::: :::: :.::::::::::
NP_775 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: ::.: ::: : :: :::::.::.:::::::: :::::.:::::.::::::
NP_775 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.:::::::::: :::::.:::::: :.::::.. ::::::::::::::::::::::::::
NP_775 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
NP_775 SDPEEDDE
>>NP_066294 (OMIM: 300325) protein SSX3 [Homo sapiens] (188 aa)
initn: 985 init1: 985 opt: 985 Z-score: 981.7 bits: 188.3 E(85289): 6.1e-48
Smith-Waterman score: 985; 78.2% identity (88.3% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::.::.:: :. :: .::::::::::::::::::: :::: :.::::::::::
NP_066 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.. : ::::::.:: : :: ::: ::::.:.:::::::::: :.:::::.::::::
NP_066 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
. :: ::::::::::::.:::::: ..::::. ::::::.:::::::::::::::::::
NP_066 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
NP_066 SDPEEDDE
>>NP_005627 (OMIM: 300326) protein SSX4 isoform a [Homo (188 aa)
initn: 1002 init1: 967 opt: 967 Z-score: 964.0 bits: 185.1 E(85289): 5.9e-47
Smith-Waterman score: 967; 76.6% identity (88.3% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.::::::. ::: ::::::::::::.:::::: :::: :.:: .::.:::
NP_005 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.::: :::.:::.: . :: ::::. :.::::::::: ::::.:::::.:::::
NP_005 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
. : ::::::::::::.:::::. :. :::.. :::::::::::::::::::::.::::
NP_005 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
NP_005 SDPEEDDE
>>XP_016885248 (OMIM: 300326) PREDICTED: protein SSX4 is (188 aa)
initn: 1002 init1: 967 opt: 967 Z-score: 964.0 bits: 185.1 E(85289): 5.9e-47
Smith-Waterman score: 967; 76.6% identity (88.3% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
::::::::.::::::. ::: ::::::::::::.:::::: :::: :.:: .::.:::
XP_016 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::.::: :::.:::.: . :: ::::. :.::::::::: ::::.:::::.:::::
XP_016 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
. : ::::::::::::.:::::. :. :::.. :::::::::::::::::::::.::::
XP_016 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::::::.
XP_016 SDPEEDDE
>>NP_783729 (OMIM: 300327) protein SSX5 isoform b [Homo (188 aa)
initn: 1020 init1: 961 opt: 961 Z-score: 958.2 bits: 184.0 E(85289): 1.2e-46
Smith-Waterman score: 961; 75.5% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::::..::: .. :: .:::::::::::..:::::: :::: :.::::::::::
NP_783 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: ::::::..: : :: ::: ::::.::.::::::::: :.::: ::::::::
NP_783 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.:::::::::::::.::.: : :: ..:::... :::::::::::::.::::::::::::
NP_783 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::.:::.
NP_783 SDPQEDDE
>>XP_011542251 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1020 init1: 961 opt: 961 Z-score: 958.2 bits: 184.0 E(85289): 1.2e-46
Smith-Waterman score: 961; 75.5% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::::..::: .. :: .:::::::::::..:::::: :::: :.::::::::::
XP_011 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: ::::::..: : :: ::: ::::.::.::::::::: :.::: ::::::::
XP_011 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.:::::::::::::.::.: : :: ..:::... :::::::::::::.::::::::::::
XP_011 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::.:::.
XP_011 SDPQEDDE
>>XP_016885247 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1020 init1: 961 opt: 961 Z-score: 958.2 bits: 184.0 E(85289): 1.2e-46
Smith-Waterman score: 961; 75.5% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
:::::::..::: .. :: .:::::::::::..:::::: :::: :.::::::::::
XP_016 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
:::..:: ::::::..: : :: ::: ::::.::.::::::::: :.::: ::::::::
XP_016 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
.:::::::::::::.::.: : :: ..:::... :::::::::::::.::::::::::::
XP_016 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDK
:::.:::.
XP_016 SDPQEDDE
188 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:56:09 2016 done: Fri Nov 4 07:56:10 2016
Total Scan time: 6.110 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]