Result of FASTA (omim) for
pFN21AB7440
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7440, 152 aa
1>>>pF1KB7440 152 - 152 aa - 152 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1499+/-0.000324; mu= 12.2554+/- 0.020
mean_var=57.8674+/-11.731, 0's: 0 Z-trim(115.5): 12 B-trim: 931 in 1/54
Lambda= 0.168600
statistics sampled from 25959 (25968) to 25959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.304), width: 16
Scan time: 4.790
The best scores are: opt bits E(85289)
NP_001026997 (OMIM: 613182) bolA-like protein 2 is ( 152) 990 248.6 2.9e-66
NP_001307508 (OMIM: 613182) bolA-like protein 2 is ( 123) 548 141.0 5.6e-34
NP_057158 (OMIM: 613181) bolA-like protein 1 precu ( 137) 180 51.5 5.5e-07
NP_001307954 (OMIM: 613181) bolA-like protein 1 pr ( 137) 180 51.5 5.5e-07
XP_006711411 (OMIM: 613181) PREDICTED: bolA-like p ( 137) 180 51.5 5.5e-07
NP_001307955 (OMIM: 613181) bolA-like protein 1 pr ( 137) 180 51.5 5.5e-07
>>NP_001026997 (OMIM: 613182) bolA-like protein 2 isofor (152 aa)
initn: 990 init1: 990 opt: 990 Z-score: 1310.6 bits: 248.6 E(85289): 2.9e-66
Smith-Waterman score: 990; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KB7 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
70 80 90 100 110 120
130 140 150
pF1KB7 LVNACLAEELPHIHAFEQKTLTPDQWARERQK
::::::::::::::::::::::::::::::::
NP_001 LVNACLAEELPHIHAFEQKTLTPDQWARERQK
130 140 150
>>NP_001307508 (OMIM: 613182) bolA-like protein 2 isofor (123 aa)
initn: 548 init1: 548 opt: 548 Z-score: 731.0 bits: 141.0 E(85289): 5.6e-34
Smith-Waterman score: 548; 100.0% identity (100.0% similar) in 87 aa overlap (1-87:1-87)
10 20 30 40 50 60
pF1KB7 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
:::::::::::::::::::::::::::
NP_001 SSWTAAMELSAEYLREKLQRDLEAEHVLPSPGGVGQVRGETAASETQAGERVPSRRAPAH
70 80 90 100 110 120
>>NP_057158 (OMIM: 613181) bolA-like protein 1 precursor (137 aa)
initn: 184 init1: 129 opt: 180 Z-score: 246.5 bits: 51.5 E(85289): 5.5e-07
Smith-Waterman score: 185; 37.8% identity (61.3% similar) in 111 aa overlap (52-151:9-119)
30 40 50 60 70
pF1KB7 LTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLG----CR-SSWTAAMELSAEYLRE
:.::. : :. :. ..:. .:
NP_057 MLSGRLVLGLVSMAGRVCLCQGSAGSGAIGPVEAAIRT
10 20 30
80 90 100 110 120 130
pF1KB7 KLQRDLEAEHVEVEDTTLNRC-----SCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELP
::.. : : .:... . .. ::: :::..::: :::::::.: :::::
NP_057 KLEEALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHAALAEELG
40 50 60 70 80 90
140 150
pF1KB7 H-IHAFEQKTLTPDQWARERQK
.::. .. :: :: .. :
NP_057 GPVHALAIQARTPAQWRENSQLDTSPPCLGGNKKTLGTP
100 110 120 130
>>NP_001307954 (OMIM: 613181) bolA-like protein 1 precur (137 aa)
initn: 184 init1: 129 opt: 180 Z-score: 246.5 bits: 51.5 E(85289): 5.5e-07
Smith-Waterman score: 185; 37.8% identity (61.3% similar) in 111 aa overlap (52-151:9-119)
30 40 50 60 70
pF1KB7 LTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLG----CR-SSWTAAMELSAEYLRE
:.::. : :. :. ..:. .:
NP_001 MLSGRLVLGLVSMAGRVCLCQGSAGSGAIGPVEAAIRT
10 20 30
80 90 100 110 120 130
pF1KB7 KLQRDLEAEHVEVEDTTLNRC-----SCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELP
::.. : : .:... . .. ::: :::..::: :::::::.: :::::
NP_001 KLEEALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHAALAEELG
40 50 60 70 80 90
140 150
pF1KB7 H-IHAFEQKTLTPDQWARERQK
.::. .. :: :: .. :
NP_001 GPVHALAIQARTPAQWRENSQLDTSPPCLGGNKKTLGTP
100 110 120 130
>>XP_006711411 (OMIM: 613181) PREDICTED: bolA-like prote (137 aa)
initn: 184 init1: 129 opt: 180 Z-score: 246.5 bits: 51.5 E(85289): 5.5e-07
Smith-Waterman score: 185; 37.8% identity (61.3% similar) in 111 aa overlap (52-151:9-119)
30 40 50 60 70
pF1KB7 LTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLG----CR-SSWTAAMELSAEYLRE
:.::. : :. :. ..:. .:
XP_006 MLSGRLVLGLVSMAGRVCLCQGSAGSGAIGPVEAAIRT
10 20 30
80 90 100 110 120 130
pF1KB7 KLQRDLEAEHVEVEDTTLNRC-----SCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELP
::.. : : .:... . .. ::: :::..::: :::::::.: :::::
XP_006 KLEEALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHAALAEELG
40 50 60 70 80 90
140 150
pF1KB7 H-IHAFEQKTLTPDQWARERQK
.::. .. :: :: .. :
XP_006 GPVHALAIQARTPAQWRENSQLDTSPPCLGGNKKTLGTP
100 110 120 130
>>NP_001307955 (OMIM: 613181) bolA-like protein 1 precur (137 aa)
initn: 184 init1: 129 opt: 180 Z-score: 246.5 bits: 51.5 E(85289): 5.5e-07
Smith-Waterman score: 185; 37.8% identity (61.3% similar) in 111 aa overlap (52-151:9-119)
30 40 50 60 70
pF1KB7 LTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLG----CR-SSWTAAMELSAEYLRE
:.::. : :. :. ..:. .:
NP_001 MLSGRLVLGLVSMAGRVCLCQGSAGSGAIGPVEAAIRT
10 20 30
80 90 100 110 120 130
pF1KB7 KLQRDLEAEHVEVEDTTLNRC-----SCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELP
::.. : : .:... . .. ::: :::..::: :::::::.: :::::
NP_001 KLEEALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHAALAEELG
40 50 60 70 80 90
140 150
pF1KB7 H-IHAFEQKTLTPDQWARERQK
.::. .. :: :: .. :
NP_001 GPVHALAIQARTPAQWRENSQLDTSPPCLGGNKKTLGTP
100 110 120 130
152 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:50:05 2016 done: Fri Nov 4 07:50:05 2016
Total Scan time: 4.790 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]