FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7413, 385 aa
  1>>>pF1KB7413 385 - 385 aa - 385 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7606+/-0.000662; mu= 14.7280+/- 0.040
 mean_var=71.6777+/-14.671, 0's: 0 Z-trim(111.1): 8  B-trim: 11 in 1/49
 Lambda= 0.151489
 statistics sampled from 12084 (12090) to 12084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.371), width:  16
 Scan time:  3.220

The best scores are:                                      opt bits E(32554)
CCDS32327.1 GDPGP1 gene_id:390637|Hs108|chr15      ( 385) 2618 580.9 6.5e-166


>>CCDS32327.1 GDPGP1 gene_id:390637|Hs108|chr15           (385 aa)
 initn: 2618 init1: 2618 opt: 2618  Z-score: 3092.1  bits: 580.9 E(32554): 6.5e-166
Smith-Waterman score: 2618; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)

               10        20        30        40        50        60
pF1KB7 MALPHDSNETSYLLPPNNEDWGRQTIPDFVYGQKDLMAEGIQWPRNAPGIPDALPQSPFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MALPHDSNETSYLLPPNNEDWGRQTIPDFVYGQKDLMAEGIQWPRNAPGIPDALPQSPFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQTIKSVRQAFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQTIKSVRQAFD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVQFNFNKIRPGEVLFRLHREPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PVQFNFNKIRPGEVLFRLHREPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPLDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPLDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GGHLHLLQDLPAPGFLFYTRGPGPDLESLISRVCRATDYLTDHEIAHNLFVTRGAPPGKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GGHLHLLQDLPAPGFLFYTRGPGPDLESLISRVCRATDYLTDHEIAHNLFVTRGAPPGKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SPSSALTGVRVILWARKSSFGIKDGEAFNVALCELAGHLPVKTSQDFSSLTEAAAVALIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPSSALTGVRVILWARKSSFGIKDGEAFNVALCELAGHLPVKTSQDFSSLTEAAAVALIQ
              310       320       330       340       350       360

              370       380     
pF1KB7 DCRLPPSQAEDVQAALVALMSQEEQ
       :::::::::::::::::::::::::
CCDS32 DCRLPPSQAEDVQAALVALMSQEEQ
              370       380     




385 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:34:10 2016 done: Fri Nov  4 07:34:10 2016
 Total Scan time:  3.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]