Result of FASTA (omim) for
pFN21AB7409
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7409, 190 aa
1>>>pF1KB7409 190 - 190 aa - 190 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7723+/-0.000258; mu= 4.6250+/- 0.016
mean_var=173.8479+/-34.432, 0's: 0 Z-trim(126.0): 7 B-trim: 36 in 1/61
Lambda= 0.097272
statistics sampled from 51036 (51044) to 51036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.598), width: 16
Scan time: 6.630
The best scores are: opt bits E(85289)
NP_061835 (OMIM: 609892) protein ripply3 isoform 1 ( 190) 1383 204.4 8.9e-53
NP_001304706 (OMIM: 609892) protein ripply3 isofor ( 106) 736 113.4 1.2e-25
NP_001304697 (OMIM: 609892) protein ripply3 isofor ( 106) 736 113.4 1.2e-25
NP_001009994 (OMIM: 609891,616566) protein ripply2 ( 128) 224 41.6 0.00061
NP_612391 (OMIM: 300575) protein ripply1 isoform 1 ( 151) 219 41.0 0.0011
>>NP_061835 (OMIM: 609892) protein ripply3 isoform 1 [Ho (190 aa)
initn: 1383 init1: 1383 opt: 1383 Z-score: 1068.5 bits: 204.4 E(85289): 8.9e-53
Smith-Waterman score: 1383; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KB7 MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS
130 140 150 160 170 180
190
pF1KB7 SRGGKCSSSK
::::::::::
NP_061 SRGGKCSSSK
190
>>NP_001304706 (OMIM: 609892) protein ripply3 isoform 2 (106 aa)
initn: 736 init1: 736 opt: 736 Z-score: 581.2 bits: 113.4 E(85289): 1.2e-25
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 106 aa overlap (85-190:1-106)
60 70 80 90 100 110
pF1KB7 GRPLEPRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDD
::::::::::::::::::::::::::::::
NP_001 MSKRQEYLRSSGEQVLASFPVQATIDFYDD
10 20 30
120 130 140 150 160 170
pF1KB7 ESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP
40 50 60 70 80 90
180 190
pF1KB7 LPQGVSSRGGKCSSSK
::::::::::::::::
NP_001 LPQGVSSRGGKCSSSK
100
>>NP_001304697 (OMIM: 609892) protein ripply3 isoform 2 (106 aa)
initn: 736 init1: 736 opt: 736 Z-score: 581.2 bits: 113.4 E(85289): 1.2e-25
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 106 aa overlap (85-190:1-106)
60 70 80 90 100 110
pF1KB7 GRPLEPRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDD
::::::::::::::::::::::::::::::
NP_001 MSKRQEYLRSSGEQVLASFPVQATIDFYDD
10 20 30
120 130 140 150 160 170
pF1KB7 ESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP
40 50 60 70 80 90
180 190
pF1KB7 LPQGVSSRGGKCSSSK
::::::::::::::::
NP_001 LPQGVSSRGGKCSSSK
100
>>NP_001009994 (OMIM: 609891,616566) protein ripply2 [Ho (128 aa)
initn: 199 init1: 152 opt: 224 Z-score: 191.8 bits: 41.6 E(85289): 0.00061
Smith-Waterman score: 224; 34.7% identity (59.7% similar) in 124 aa overlap (4-122:2-122)
10 20 30 40 50
pF1KB7 MEPEAAAGARKARGRGCHCPG-DAPWRPPPPRGPESPAP--WRPWIQTPGDAELTRTGRP
: :.::. ... . : . :.: : : .: ::::... : : ..
NP_001 MENAGGAEGTESGAAACAATDGPTRRA---GADSGYAGFWRPWVDAGGKKEEETPNHA
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 LE--PRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDE
: : . : .: . :.::::.. : :: .:: . .: .: .::.::::.::.:
NP_001 AEAMPDGPGMTAASGKLYQFRHPVRLFWPKSKCYDYLYQEAEALLKNFPIQATISFYEDS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 STESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPL
..:. :
NP_001 DSEDEIEDLTCEN
120
>>NP_612391 (OMIM: 300575) protein ripply1 isoform 1 [Ho (151 aa)
initn: 261 init1: 176 opt: 219 Z-score: 187.0 bits: 41.0 E(85289): 0.0011
Smith-Waterman score: 219; 39.8% identity (64.5% similar) in 93 aa overlap (39-128:57-147)
10 20 30 40 50 60
pF1KB7 ARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFG
::::... .:. : : : : . .
NP_612 APLALPGLLSPSCLLSSGQEVNGSERGTCLWRPWLSSTNDS--PRQMRKLVDLAAGGATA
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB7 ---SKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESASEAEE
.:. :.::::.. : :. .:: :.:: .: .:::::::..:.: ..: : ::
NP_612 AEVTKAESKFHHPVRLFWPKSRSFDYLYSAGEILLQNFPVQATINLYEDSDSEEEEEDEE
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB7 PEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVSSRGGK
:.
NP_612 QEDEEEK
150
190 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:31:50 2016 done: Fri Nov 4 07:31:51 2016
Total Scan time: 6.630 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]