Result of FASTA (ccds) for
pFN21AB7402
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7402, 363 aa
1>>>pF1KB7402 363 - 363 aa - 363 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5174+/-0.000936; mu= 14.9676+/- 0.056
mean_var=63.0463+/-12.050, 0's: 0 Z-trim(104.9): 22 B-trim: 0 in 0/51
Lambda= 0.161527
statistics sampled from 8130 (8146) to 8130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.25), width: 16
Scan time: 2.440
The best scores are: opt bits E(32554)
CCDS32883.1 C3 gene_id:718|Hs108|chr19 (1663) 406 103.6 1.3e-21
CCDS59005.1 C4A gene_id:720|Hs108|chr6 (1698) 315 82.4 3.1e-15
CCDS47404.1 C4A gene_id:720|Hs108|chr6 (1744) 315 82.4 3.2e-15
CCDS47405.1 C4B gene_id:721|Hs108|chr6 (1744) 313 82.0 4.4e-15
CCDS6826.1 C5 gene_id:727|Hs108|chr9 (1676) 276 73.3 1.7e-12
CCDS42519.1 CPAMD8 gene_id:27151|Hs108|chr19 (1932) 274 72.9 2.6e-12
>>CCDS32883.1 C3 gene_id:718|Hs108|chr19 (1663 aa)
initn: 510 init1: 304 opt: 406 Z-score: 501.7 bits: 103.6 E(32554): 1.3e-21
Smith-Waterman score: 468; 30.1% identity (52.5% similar) in 396 aa overlap (4-275:764-1156)
10 20 30
pF1KB7 MPVRTLFPESWLWRKFTLPKS-KSGISHYPISV
:. ::::::: : . :.::: ...
CCDS32 LRRQHARASHLGLARSNLDEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNI
740 750 760 770 780 790
40 50 60 70 80 90
pF1KB7 KVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAMLYN
. ::::::....::.. .:.::.::::.:::..::.::.:: ::.:::::.:.:.:::
CCDS32 FLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYN
800 810 820 830 840 850
100 110
pF1KB7 FRDRQA-KVRVEFPHKETLCSAS---------------------------KPG-------
.:. : :::::. :. ..:: . : :
CCDS32 YRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVK
860 870 880 890 900 910
120 130 140 150
pF1KB7 -APSHQ--------------AGVQIQQTSYSIVLEPQ--GQ--TQTKLVPRQEFLNMVPD
: :. :.....: .:.:. :. .: . .: .. ..:::
CCDS32 AAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPD
920 930 940 950 960 970
160
pF1KB7 TEAEVFISVQG-------------------------------------------------
::.:. : .::
CCDS32 TESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQ
980 990 1000 1010 1020 1030
170 180 190 200 210
pF1KB7 -------------------YTQMLTHRSSDGTYHTSKGNPGSTWLTSYVFRVFALAYSMM
:::.:. :. .... . :::::.:: .::.:: ...
CCDS32 WEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI
1040 1050 1060 1070 1080 1090
220 230 240 250 260
pF1KB7 TTQVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQDGYQGS-EEDVSLTALVLIA
. .. . :: ..:.:...: :: : : .::. : : ... :.:..:::.:::.
CCDS32 A---IDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLIS
1100 1110 1120 1130 1140 1150
270 280 290 300 310 320
pF1KB7 LNEGKELCRQKNLMASIERARGFLERKLPDIQTTFAVAIASYALALANSSQANDCLDSFA
:.:.:.
CCDS32 LQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF
1160 1170 1180 1190 1200 1210
>>CCDS59005.1 C4A gene_id:720|Hs108|chr6 (1698 aa)
initn: 510 init1: 225 opt: 315 Z-score: 387.0 bits: 82.4 E(32554): 3.1e-15
Smith-Waterman score: 343; 25.8% identity (48.1% similar) in 391 aa overlap (1-273:772-1152)
10 20 30
pF1KB7 MPVRTLFPESWLWRKFTLPKSKSGISHYPI
.:::..:::.:::: :. . . .
CCDS59 LRKKSRDKGQAGLQRALEILQEEDLIDEDDIPVRSFFPENWLWRVETVDRFQI------L
750 760 770 780 790
40 50 60 70 80 90
pF1KB7 SVKVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAML
.. .:::.:::.. .::. .::::. : .: :.. : . :.:: :: : ::.... .:
CCDS59 TLWLPDSLTTWEIHGLSLSKTKGLCVATPVQLRVFREFHLHLRLPMSVRRFEQLELRPVL
800 810 820 830 840 850
100 110 120 130
pF1KB7 YNFRDRQAKVRVEFPHKETLCSA---------------SKPGA----PSHQAGVQIQQTS
::. :.. : :. : :: : ..: : :. :.:... ..
CCDS59 YNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSVVPTAAAAVSLKVVA
860 870 880 890 900 910
140 150 160
pF1KB7 YSIVLEPQGQTQTKL--------VPRQEFL---------------------NMVPDTEAE
. : :.. .:. . :.:.. ::.:: . .
CCDS59 RGSFEFPVGDAVSKVLQIEKEGAIHREELVYELNPLDHRGRTLEIPGNSDPNMIPDGDFN
920 930 940 950 960 970
pF1KB7 VFISV-------------------------------------------------------
.. :
CCDS59 SYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWS
980 990 1000 1010 1020 1030
170 180 190 200 210
pF1KB7 ---------------QGYTQMLTHRSSDGTYHTSKGNPGSTWLTSYVFRVFALAYSMMTT
.:: .. :..::.: . . .:::::..:..:..:: ..
CCDS59 TLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGG
1040 1050 1060 1070 1080 1090
220 230 240 250 260 270
pF1KB7 QVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQDGYQGSEEDVSLTALVLIALNE
: .: . .::.. ..:: :: : . ::. ::: : :..: :.:::.: :::..
CCDS59 ---SPEKLQETSNWLLSQQQA-DGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHH
1100 1110 1120 1130 1140 1150
280 290 300 310 320 330
pF1KB7 GKELCRQKNLMASIERARGFLERKLPDIQTTFAVAIASYALALANSSQANDCLDSFASPS
:
CCDS59 GLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYALTLTKAPVDLLG
1160 1170 1180 1190 1200 1210
>>CCDS47404.1 C4A gene_id:720|Hs108|chr6 (1744 aa)
initn: 510 init1: 225 opt: 315 Z-score: 386.8 bits: 82.4 E(32554): 3.2e-15
Smith-Waterman score: 343; 25.8% identity (48.1% similar) in 391 aa overlap (1-273:772-1152)
10 20 30
pF1KB7 MPVRTLFPESWLWRKFTLPKSKSGISHYPI
.:::..:::.:::: :. . . .
CCDS47 LRKKSRDKGQAGLQRALEILQEEDLIDEDDIPVRSFFPENWLWRVETVDRFQI------L
750 760 770 780 790
40 50 60 70 80 90
pF1KB7 SVKVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAML
.. .:::.:::.. .::. .::::. : .: :.. : . :.:: :: : ::.... .:
CCDS47 TLWLPDSLTTWEIHGLSLSKTKGLCVATPVQLRVFREFHLHLRLPMSVRRFEQLELRPVL
800 810 820 830 840 850
100 110 120 130
pF1KB7 YNFRDRQAKVRVEFPHKETLCSA---------------SKPGA----PSHQAGVQIQQTS
::. :.. : :. : :: : ..: : :. :.:... ..
CCDS47 YNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSVVPTAAAAVSLKVVA
860 870 880 890 900 910
140 150 160
pF1KB7 YSIVLEPQGQTQTKL--------VPRQEFL---------------------NMVPDTEAE
. : :.. .:. . :.:.. ::.:: . .
CCDS47 RGSFEFPVGDAVSKVLQIEKEGAIHREELVYELNPLDHRGRTLEIPGNSDPNMIPDGDFN
920 930 940 950 960 970
pF1KB7 VFISV-------------------------------------------------------
.. :
CCDS47 SYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWS
980 990 1000 1010 1020 1030
170 180 190 200 210
pF1KB7 ---------------QGYTQMLTHRSSDGTYHTSKGNPGSTWLTSYVFRVFALAYSMMTT
.:: .. :..::.: . . .:::::..:..:..:: ..
CCDS47 TLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGG
1040 1050 1060 1070 1080 1090
220 230 240 250 260 270
pF1KB7 QVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQDGYQGSEEDVSLTALVLIALNE
: .: . .::.. ..:: :: : . ::. ::: : :..: :.:::.: :::..
CCDS47 ---SPEKLQETSNWLLSQQQA-DGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHH
1100 1110 1120 1130 1140 1150
280 290 300 310 320 330
pF1KB7 GKELCRQKNLMASIERARGFLERKLPDIQTTFAVAIASYALALANSSQANDCLDSFASPS
:
CCDS47 GLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYALTLTKAPVDLLG
1160 1170 1180 1190 1200 1210
>>CCDS47405.1 C4B gene_id:721|Hs108|chr6 (1744 aa)
initn: 516 init1: 225 opt: 313 Z-score: 384.3 bits: 82.0 E(32554): 4.4e-15
Smith-Waterman score: 344; 25.6% identity (48.3% similar) in 391 aa overlap (1-273:772-1152)
10 20 30
pF1KB7 MPVRTLFPESWLWRKFTLPKSKSGISHYPI
.:::..:::.:::: :. . . .
CCDS47 LRKKSRDKGQAGLQRALEILQEEDLIDEDDIPVRSFFPENWLWRVETVDRFQI------L
750 760 770 780 790
40 50 60 70 80 90
pF1KB7 SVKVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAML
.. .:::.:::.. .::. .::::. : .: :.. : . :.:: :: : ::.... .:
CCDS47 TLWLPDSLTTWEIHGLSLSKTKGLCVATPVQLRVFREFHLHLRLPMSVRRFEQLELRPVL
800 810 820 830 840 850
100 110 120 130
pF1KB7 YNFRDRQAKVRVEFPHKETLCSA---------------SKPGA----PSHQAGVQIQQTS
::. :.. : :. : :: : ..: : :. ..:... ..
CCDS47 YNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSVVPTAATAVSLKVVA
860 870 880 890 900 910
140 150 160
pF1KB7 YSIVLEPQGQTQTKL--------VPRQEFL---------------------NMVPDTEAE
. : :.. .:. . :.:.. ::.:: . .
CCDS47 RGSFEFPVGDAVSKVLQIEKEGAIHREELVYELNPLDHRGRTLEIPGNSDPNMIPDGDFN
920 930 940 950 960 970
pF1KB7 VFISV-------------------------------------------------------
.. :
CCDS47 SYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWS
980 990 1000 1010 1020 1030
170 180 190 200 210
pF1KB7 ---------------QGYTQMLTHRSSDGTYHTSKGNPGSTWLTSYVFRVFALAYSMMTT
.:: .. :..::.: . . .:::::..:..:..:: ..
CCDS47 TLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRGSSTWLTAFVLKVLSLAQEQVGG
1040 1050 1060 1070 1080 1090
220 230 240 250 260 270
pF1KB7 QVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQDGYQGSEEDVSLTALVLIALNE
: .: . .::.. ..:: :: : . .::. ::: : :..: :.:::.: :::..
CCDS47 ---SPEKLQETSNWLLSQQQA-DGSFQDLSPVIHRSMQGGLVGNDETVALTAFVTIALHH
1100 1110 1120 1130 1140 1150
280 290 300 310 320 330
pF1KB7 GKELCRQKNLMASIERARGFLERKLPDIQTTFAVAIASYALALANSSQANDCLDSFASPS
:
CCDS47 GLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRG
1160 1170 1180 1190 1200 1210
>>CCDS6826.1 C5 gene_id:727|Hs108|chr9 (1676 aa)
initn: 370 init1: 132 opt: 276 Z-score: 338.0 bits: 73.3 E(32554): 1.7e-12
Smith-Waterman score: 276; 33.3% identity (69.2% similar) in 120 aa overlap (3-122:765-876)
10 20 30
pF1KB7 MPVRTLFPESWLWRKFTLPKSKSGISHYPISV
.:. :::::::. .:. :. ..
CCDS68 ASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQ------LQF
740 750 760 770 780
40 50 60 70 80 90
pF1KB7 KVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAMLYN
.:::.:::.. :.. .. :.::.: . :.:. :.....: ::.:.::.:... .::
CCDS68 ALPDSLTTWEIQGVGI-SNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYN
790 800 810 820 830 840
100 110 120 130 140 150
pF1KB7 FRDRQAKVRVEFPHKETLCSASKPGAPSHQAGVQIQQTSYSIVLEPQGQTQTKLVPRQEF
.: . :.. : .:.. .: . .::
CCDS68 YRTSGMQFCVKMSAVEGICTSESP-VIDHQGTKSSKCVRQKVEGSSSHLVTFTVLPLEIG
850 860 870 880 890 900
>>CCDS42519.1 CPAMD8 gene_id:27151|Hs108|chr19 (1932 aa)
initn: 510 init1: 221 opt: 274 Z-score: 334.5 bits: 72.9 E(32554): 2.6e-12
Smith-Waterman score: 282; 33.7% identity (60.9% similar) in 184 aa overlap (150-330:1210-1384)
120 130 140 150 160 170
pF1KB7 SHQAGVQIQQTSYSIVLEPQGQTQTKLVPRQEFLNMVPDTEAEVF-ISVQGYTQMLTHRS
:. .. :..: :. :::: ..::..
CCDS42 HLNNLLRLPFGCGEQNMIHFAPNVFVLKYLQKTQQLSPEVERETTDYLVQGYQRQLTYKR
1180 1190 1200 1210 1220 1230
180 190 200 210 220 230
pF1KB7 SDGTYHT--SKGNPGSTWLTSYVFRVFALAYSMMTTQVLSLSSLCDMANWIIIDRQAEDG
.::.: . . :: :::..:.. :: : :.. .. :.. .::: ..:: ::
CCDS42 QDGSYSAFGERDASGSMWLTAFVLKSFAQARSFIFVDPRELAA---AKSWIIQQQQA-DG
1240 1250 1260 1270 1280 1290
240 250 260 270 280 290
pF1KB7 HFLEKGPVVMTSMQDGYQGSEEDVSLTALVLIALNEGKELCRQKNLMASIERARGFLERK
:: : :. ..: : .:. : ::: :..:: : ... .: ..:: :::
CCDS42 SFLAVGRVLNKDIQGGIHGT---VPLTAYVVVALLETGTASEEER--GSTDKARHFLESA
1300 1310 1320 1330 1340 1350
300 310 320 330 340 350
pF1KB7 LPDIQTTFAVAIASYALALANSSQANDCLDSFASPSGCGMLLNQPQSWSGEGVISNPAMC
: . .. :...:::.: : : . : .. :
CCDS42 APLAMDPYSCALTTYALTLLRSPAAPEALRKLRSLAIMRDGVTHWSLSNSWDVDKGTFLS
1360 1370 1380 1390 1400 1410
360
pF1KB7 YSSLSVS
CCDS42 FSDRVSQSVVSAEVEMTAYALLTYTLLGDVAAALPVVKWLSQQRNALGGFSSTQDTCVAL
1420 1430 1440 1450 1460 1470
>--
initn: 523 init1: 221 opt: 274 Z-score: 334.5 bits: 72.9 E(32554): 2.6e-12
Smith-Waterman score: 274; 39.5% identity (72.8% similar) in 114 aa overlap (4-117:791-901)
10 20 30
pF1KB7 MPVRTLFPESWLWRKFTLPKSKSGISHYPISVK
::.:::.:.:. ... .. :: . .:::
CCDS42 DEAVPAFQPHTGSLVAVAPSRHPPRTEKRKRTFFPETWIWHCLNI-SDPSG--EGTLSVK
770 780 790 800 810
40 50 60 70 80 90
pF1KB7 VPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAMLYNF
::::::.: .:.:...::: ...: : ..: ::::. ::. .::.:::.: .::.
CCDS42 VPDSITSWVGEAVALSTSQGLGIAEPSLLKTFKPFFVDFMLPALIIRGEQVKIPLSVYNY
820 830 840 850 860 870
100 110 120 130 140 150
pF1KB7 RDRQAKVRVEFPHKETLCSASKPGAPSHQAGVQIQQTSYSIVLEPQGQTQTKLVPRQEFL
:.: ... . . ...::
CCDS42 MGTCAEVYMKLSVPKGIQFVGHPGKRHVTKKMCVAPGEAEPIWVVLSFSDLGLNNITAKA
880 890 900 910 920 930
363 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:27:01 2016 done: Fri Nov 4 07:27:01 2016
Total Scan time: 2.440 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]