FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7401, 197 aa 1>>>pF1KB7401 197 - 197 aa - 197 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5647+/-0.000715; mu= 16.9033+/- 0.043 mean_var=54.8070+/-11.445, 0's: 0 Z-trim(107.6): 16 B-trim: 25 in 1/49 Lambda= 0.173243 statistics sampled from 9656 (9664) to 9656 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.297), width: 16 Scan time: 1.780 The best scores are: opt bits E(32554) CCDS66723.1 TMEM179 gene_id:388021|Hs108|chr14 ( 233) 1181 302.8 1.1e-82 CCDS73688.1 TMEM179 gene_id:388021|Hs108|chr14 ( 211) 1179 302.3 1.4e-82 >>CCDS66723.1 TMEM179 gene_id:388021|Hs108|chr14 (233 aa) initn: 1181 init1: 1181 opt: 1181 Z-score: 1598.3 bits: 302.8 E(32554): 1.1e-82 Smith-Waterman score: 1181; 99.4% identity (99.4% similar) in 176 aa overlap (1-176:1-176) 10 20 30 40 50 60 pF1KB7 MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 VFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDIDLELGVDNSAFYDQFAIAQVGGSGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::: : CCDS66 VFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDIDLELGVDNSAFYDQFAIAQFGLWAS 130 140 150 160 170 180 190 pF1KB7 EGRLAMLGGGHLLLDIC CCDS66 WLAWLAITTLAFLKVYHNYRQEDLLDSLIHEKELLLARPSPRTSFQEEKSAVI 190 200 210 220 230 >>CCDS73688.1 TMEM179 gene_id:388021|Hs108|chr14 (211 aa) initn: 1179 init1: 1179 opt: 1179 Z-score: 1596.2 bits: 302.3 E(32554): 1.4e-82 Smith-Waterman score: 1179; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KB7 MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 VFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDIDLELGVDNSAFYDQFAIAQVGGSGQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 VFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDIDLELGVDNSAFYDQFAIAQVQFRTP 130 140 150 160 170 180 190 pF1KB7 EGRLAMLGGGHLLLDIC CCDS73 GWPLKALAGRGWPEDASPGQEPSKGAGHGWA 190 200 210 197 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 07:26:27 2016 done: Fri Nov 4 07:26:27 2016 Total Scan time: 1.780 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]