Result of FASTA (omim) for
pFN21AB7365
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7365, 188 aa
1>>>pF1KB7365 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5215+/-0.000274; mu= 14.1313+/- 0.017
mean_var=100.8801+/-20.042, 0's: 0 Z-trim(120.7): 35 B-trim: 0 in 0/58
Lambda= 0.127694
statistics sampled from 36137 (36178) to 36137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.424), width: 16
Scan time: 5.500
The best scores are: opt bits E(85289)
NP_775494 (OMIM: 300542) protein SSX7 [Homo sapien ( 188) 1296 248.0 6.6e-66
NP_783629 (OMIM: 300192,300813) protein SSX2 isofo ( 188) 1097 211.3 7.2e-55
NP_066294 (OMIM: 300325) protein SSX3 [Homo sapien ( 188) 1088 209.7 2.3e-54
XP_016884919 (OMIM: 300542) PREDICTED: protein SSX ( 223) 1075 207.4 1.4e-53
XP_016885247 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1071 206.6 2e-53
NP_783729 (OMIM: 300327) protein SSX5 isoform b [H ( 188) 1071 206.6 2e-53
XP_011542251 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1071 206.6 2e-53
XP_016885248 (OMIM: 300326) PREDICTED: protein SSX ( 188) 1048 202.3 3.8e-52
NP_005627 (OMIM: 300326) protein SSX4 isoform a [H ( 188) 1048 202.3 3.8e-52
NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo ( 188) 998 193.1 2.2e-49
NP_001265620 (OMIM: 300813,312820) protein SSX1 [H ( 188) 998 193.1 2.2e-49
NP_066295 (OMIM: 300327) protein SSX5 isoform a [H ( 229) 934 181.4 9.1e-46
NP_001265626 (OMIM: 300192,300813) protein SSX2 is ( 214) 883 172.0 5.8e-43
NP_003138 (OMIM: 300192,300813) protein SSX2 isofo ( 223) 883 172.0 6e-43
XP_011542187 (OMIM: 300325) PREDICTED: protein SSX ( 170) 869 169.3 3e-42
XP_016884920 (OMIM: 300542) PREDICTED: protein SSX ( 129) 754 148.0 5.8e-36
NP_783856 (OMIM: 300326) protein SSX4 isoform b [H ( 153) 575 115.1 5.5e-26
NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894) 226 51.5 4.4e-06
NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894) 226 51.5 4.4e-06
XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377) 213 48.8 1.2e-05
XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492) 213 48.9 1.5e-05
NP_001091643 (OMIM: 609759) probable histone-lysin ( 492) 213 48.9 1.5e-05
XP_011521133 (OMIM: 609759) PREDICTED: probable hi ( 172) 184 43.1 0.00029
>>NP_775494 (OMIM: 300542) protein SSX7 [Homo sapiens] (188 aa)
initn: 1296 init1: 1296 opt: 1296 Z-score: 1304.2 bits: 248.0 E(85289): 6.6e-66
Smith-Waterman score: 1296; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_775 SDPEEDDE
>>NP_783629 (OMIM: 300192,300813) protein SSX2 isoform b (188 aa)
initn: 1097 init1: 1097 opt: 1097 Z-score: 1106.0 bits: 211.3 E(85289): 7.2e-55
Smith-Waterman score: 1097; 85.6% identity (92.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
::::::::::: .::::::::::.::::::::::.::::::. ::: :::::::::::::
NP_783 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::::::::: : : :.::::.::: :.::::::::::: ::: : ::::::::::::
NP_783 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
:::. :::::: :::::.:::::::.:::::.. ::::::.:::::::::::::::::::
NP_783 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_783 SDPEEDDE
>>NP_066294 (OMIM: 300325) protein SSX3 [Homo sapiens] (188 aa)
initn: 1088 init1: 1088 opt: 1088 Z-score: 1097.1 bits: 209.7 E(85289): 2.3e-54
Smith-Waterman score: 1088; 85.1% identity (91.5% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::.::::: .::::::::::.::::::::::.:::::: ::: :::::::::::::
NP_066 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::: :: ::.: .::.:::::::: :.::::.:::::: ::: ::::::::::::::
NP_066 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
: :: :::::: :::::.:::::::.:::::: ::::::.:::::::::::::::::::
NP_066 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_066 SDPEEDDE
>>XP_016884919 (OMIM: 300542) PREDICTED: protein SSX7 is (223 aa)
initn: 1073 init1: 1073 opt: 1075 Z-score: 1083.2 bits: 207.4 E(85289): 1.4e-53
Smith-Waterman score: 1194; 84.1% identity (84.1% similar) in 220 aa overlap (1-185:1-220)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSG------------------------
::::::::::::::::::::::::::::::::::::
XP_016 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGNREVQEKEERWGIAHRWSSQKTHN
130 140 150 160 170 180
160 170 180
pF1KB7 -----------PKRGKHAWTHRLRERKQLVIYEEISDPEEDDE
:::::::::::::::::::::::::::::
XP_016 INRLSLSSSMGPKRGKHAWTHRLRERKQLVIYEEISDPEEDDE
190 200 210 220
>>XP_016885247 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1071 init1: 1071 opt: 1071 Z-score: 1080.1 bits: 206.6 E(85289): 2e-53
Smith-Waterman score: 1071; 83.0% identity (93.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::::.::::.:.:::::.::.:::::::::.:::::::. ::: :::::::::::::
XP_016 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
:::::::::::.: ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
XP_016 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
XP_016 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
:::.::::
XP_016 SDPQEDDE
>>NP_783729 (OMIM: 300327) protein SSX5 isoform b [Homo (188 aa)
initn: 1071 init1: 1071 opt: 1071 Z-score: 1080.1 bits: 206.6 E(85289): 2e-53
Smith-Waterman score: 1071; 83.0% identity (93.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::::.::::.:.:::::.::.:::::::::.:::::::. ::: :::::::::::::
NP_783 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
:::::::::::.: ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
NP_783 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
NP_783 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
:::.::::
NP_783 SDPQEDDE
>>XP_011542251 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1071 init1: 1071 opt: 1071 Z-score: 1080.1 bits: 206.6 E(85289): 2e-53
Smith-Waterman score: 1071; 83.0% identity (93.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::::.::::.:.:::::.::.:::::::::.:::::::. ::: :::::::::::::
XP_011 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
:::::::::::.: ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
XP_011 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
XP_011 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
:::.::::
XP_011 SDPQEDDE
>>XP_016885248 (OMIM: 300326) PREDICTED: protein SSX4 is (188 aa)
initn: 1048 init1: 1048 opt: 1048 Z-score: 1057.2 bits: 202.3 E(85289): 3.8e-52
Smith-Waterman score: 1048; 82.4% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::::::::: ::: ::..:.:::::::::::::::::: ::: ::::: .::.:::
XP_016 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::.::::::.. :.:..:::: ::::. :::::::::: ::::::::::::::::
XP_016 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
: : :::::: :::::.:::::.::: :::::::::::::::::::::::::::.::::
XP_016 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
XP_016 SDPEEDDE
>>NP_005627 (OMIM: 300326) protein SSX4 isoform a [Homo (188 aa)
initn: 1048 init1: 1048 opt: 1048 Z-score: 1057.2 bits: 202.3 E(85289): 3.8e-52
Smith-Waterman score: 1048; 82.4% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::::::::: ::: ::..:.:::::::::::::::::: ::: ::::: .::.:::
NP_005 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::.::::::.. :.:..:::: ::::. :::::::::: ::::::::::::::::
NP_005 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
: : :::::: :::::.:::::.::: :::::::::::::::::::::::::::.::::
NP_005 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_005 SDPEEDDE
>>NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo sap (188 aa)
initn: 998 init1: 998 opt: 998 Z-score: 1007.5 bits: 193.1 E(85289): 2.2e-49
Smith-Waterman score: 998; 79.3% identity (88.8% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::.::.::: :. :: .:.::::: :::::::.::: ::::::::::.:.::::
NP_005 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::.:::::: : :::.::::::::.:. :::.::::: ::.::.::::::::::.
NP_005 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
:::::: :::: :::::.: :::: . :::::: ::::::::::::::::::::::::::
NP_005 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_005 SDPEEDDE
188 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:52:55 2016 done: Fri Nov 4 06:52:56 2016
Total Scan time: 5.500 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]