Result of FASTA (ccds) for
pFN21AB7248
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7248, 534 aa
1>>>pF1KB7248 534 - 534 aa - 534 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8481+/-0.000874; mu= 21.7715+/- 0.053
mean_var=77.0620+/-14.932, 0's: 0 Z-trim(107.8): 53 B-trim: 2 in 1/51
Lambda= 0.146101
statistics sampled from 9750 (9797) to 9750 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.301), width: 16
Scan time: 3.530
The best scores are: opt bits E(32554)
CCDS3864.1 LPCAT1 gene_id:79888|Hs108|chr5 ( 534) 3558 759.6 0
CCDS10753.1 LPCAT2 gene_id:54947|Hs108|chr16 ( 544) 1526 331.3 1.7e-90
CCDS32191.1 LPCAT4 gene_id:254531|Hs108|chr15 ( 524) 1107 243.0 6.4e-64
>>CCDS3864.1 LPCAT1 gene_id:79888|Hs108|chr5 (534 aa)
initn: 3558 init1: 3558 opt: 3558 Z-score: 4053.0 bits: 759.6 E(32554): 0
Smith-Waterman score: 3558; 100.0% identity (100.0% similar) in 534 aa overlap (1-534:1-534)
10 20 30 40 50 60
pF1KB7 MRLRGCGPRAAPASSAGASDARLLAPPGRNPFVHELRLSALQKAQVALMTLTLFPVRLLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MRLRGCGPRAAPASSAGASDARLLAPPGRNPFVHELRLSALQKAQVALMTLTLFPVRLLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AAAMMLLAWPLALVASLGSAEKEPEQPPALWRKVVDFLLKAIMRTMWFAGGFHRVAVKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 AAAMMLLAWPLALVASLGSAEKEPEQPPALWRKVVDFLLKAIMRTMWFAGGFHRVAVKGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QALPTEAAILTLAPHSSYFDAIPVTMTMSSIVMKAESRDIPIWGTLIQYIRPVFVSRSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 QALPTEAAILTLAPHSSYFDAIPVTMTMSSIVMKAESRDIPIWGTLIQYIRPVFVSRSDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVLRYPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVLRYPN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMAE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDRYSERAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 ALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDRYSERAR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 MKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRPARTLDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRPARTLDT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 IQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTDLFRAIDQEEKGKITFADFHRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 IQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTDLFRAIDQEEKGKITFADFHRFA
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 EMYPAFAEEYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAGRKPVRKKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EMYPAFAEEYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAGRKPVRKKLD
490 500 510 520 530
>>CCDS10753.1 LPCAT2 gene_id:54947|Hs108|chr16 (544 aa)
initn: 1353 init1: 1353 opt: 1526 Z-score: 1738.1 bits: 331.3 E(32554): 1.7e-90
Smith-Waterman score: 1526; 44.6% identity (75.2% similar) in 509 aa overlap (21-523:33-535)
10 20 30 40 50
pF1KB7 MRLRGCGPRAAPASSAGASDARLLAPPGRNPFVHELRLSALQKAQVALMT
: .. :: ::::.. .... ...:..:.
CCDS10 RCAQAAEVAATVPGAGVGNVGLRPPMVPRQASFFPPPVPNPFVQQTQIGSARRVQIVLLG
10 20 30 40 50 60
60 70 80 90 100
pF1KB7 LTLFPVRLLVAAAMMLLAWPLALVASLGSAEKEPEQPPALWR-KVVDFLLKAIMRTMWFA
. :.:.:.:..: ..:::::.: .... :: .: . :: :... :: . :.:.:.
CCDS10 IILLPIRVLLVALILLLAWPFAAISTVCCPEKLT-HPITGWRRKITQTALKFLGRAMFFS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 GGFHRVAVKGRQALPTEAAILTLAPHSSYFDAIP-VTMTMSSIVMKAESRDIPIWGTLIQ
:: :::::. : : :: ... ::::..::.: :. . :.: . :. ..:. : :..
CCDS10 MGFI-VAVKGKIASPLEAPVFVAAPHSTFFDGIACVVAGLPSMVSRNENAQVPLIGRLLR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 YIRPVFVSRSDQDSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPG
..::.::: : :::..:..:: .:. :.:.::::..:::::::::.:::::::::::::
CCDS10 AVQPVLVSRVDPDSRKNTINEIIKRTTSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 APVQPVVLRYPNKLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPA
.:::::.:::::::::.:::::: ... ::.::. ..::.::.:: :..::: .:.
CCDS10 VPVQPVLLRYPNKLDTVTWTWQGYTFIQLCMLTFCQLFTKVEVEFMPVQVPNDEEKNDPV
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 LYASNVRRVMAEALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKL
:.:..:: .::::::. :::.:.:::.: .. ::: :: .. :.::... : : : . .
CCDS10 LFANKVRNLMAEALGIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKISRKLKLDWDGV
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB7 EKDLDRYSERARMKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVAL
.: ::.:. : . : .::: ::: :..::::.:...:.:::.. .: .:.:: :..:
CCDS10 RKHLDEYASIASSSKGGRIGIEEFAKYLKLPVSDVLRQLFALFDRNHDGSIDFREYVIGL
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB7 SVVCRPARTLDTIQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTDLFRAIDQEEK
.:.: :. : . ::.:::.. ..::: . : ..: ::...::: .: :. ::. : : .
CCDS10 AVLCNPSNTEEIIQVAFKLFDVDEDGYITEEEFSTILQASLGVPDLDVSGLFKEIAQGD-
430 440 450 460 470
470 480 490 500 510 520
pF1KB7 GKITFADFHRFAEMYPAFAEEYLYPDQTHFESCAETS-PAPI---PNGFCADFSPENSDA
.:.. .:. :: .: .:. .. ...: : : . :. :::. .
CCDS10 -SISYEEFKSFALKHPEYAK--IFTTYLDLQTCHVFSLPKEVQTTPSTASNKVSPEKHEE
480 490 500 510 520 530
530
pF1KB7 GRKPVRKKLD
CCDS10 STSDKKDD
540
>>CCDS32191.1 LPCAT4 gene_id:254531|Hs108|chr15 (524 aa)
initn: 1068 init1: 726 opt: 1107 Z-score: 1261.0 bits: 243.0 E(32554): 6.4e-64
Smith-Waterman score: 1107; 37.6% identity (68.6% similar) in 500 aa overlap (26-510:18-505)
10 20 30 40 50
pF1KB7 MRLRGCGPRAAPASSAGASDARLLAPPGR-NPFVHELRLSALQKAQVALMTLTLFPVRLL
::. :::::::.:: ::... :. : :.:.:
CCDS32 MSQGSPGDWAPLDPTPGPPASPNPFVHELHLSRLQRVKFCLLGALLAPIRVL
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VAAAMMLLAWPLALVASLGSAEKEPEQPPALWRKVV--DFLLKAIMRTMWFAGGFHRVAV
.: ...: ::.: . : .:.. ..: . :::.: . .: .. : ..: :: :. :
CCDS32 LAFIVLFLLWPFAWLQVAGLSEEQLQEPITGWRKTVCHNGVL-GLSRLLFFLLGFLRIRV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 KGRQALPTEAAILTLAPHSSYFDAIPVTMT---MSSIVMKAESRDIPIWGTLIQYIRPVF
.:..: .: .:. ::::..:: :... . ..: .::. ..:. :.:... . ..
CCDS32 RGQRASRLQAPVLVAAPHSTFFD--PIVLLPCDLPKVVSRAENLSVPVIGALLRFNQAIL
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 VSRSDQDSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPV
::: : :::..:::..::: :.:::::...::::::.:. :. ::::::: :.:::::
CCDS32 VSRHDPASRRRVVEEVRRRATSGGKWPQVLFFPEGTCSNKKALLKFKPGAFIAGVPVQPV
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB7 VLRYPNKLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNV
..::::.::: .:.:.:::.:..:::: : . :..:::::: :: ::.:.:.:::.::
CCDS32 LIRYPNSLDTTSWAWRGPGVLKVLWLTASQPCSIVDVEFLPVYHPSPEESRDPTLYANNV
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB7 RRVMAEALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDR
.::::.:::. .:. : ... :.:.. . : :.....: ::. . :
CCDS32 QRVMAQALGIPATECEFVGSLPVIVVGRLKVALEPQLWELGKVLRKAGLSAGYV--DAGA
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB7 YSERARMKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRP
:.:: . : ::: .:.. . . :. :... .: ::.:. ..::...
CCDS32 EPGRSRMISQE-----EFARQLQLSDPQTVAGAFGYFQQDTKGLVDFRDVALALAAL-DG
350 360 370 380 390 400
420 430 440 450 460
pF1KB7 ARTLDTI-QLAFKMYGA-QEDGS---VGEGDLSCILKTALGVAELTVTDLFRAIDQEEKG
.:.:. . .:::.... : .: . . .: ::. :: . ..: : . : ..
CCDS32 GRSLEELTRLAFELFAEEQAEGPNRLLYKDGFSTILHLLLGSPHPAATALHAELCQAGSS
410 420 430 440 450 460
470 480 490 500 510 520
pF1KB7 K-ITFADFHRFAEMYPAFAE---EYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAG
. ... .:. :. : ... :: : .: .. ..: : :
CCDS32 QGLSLCQFQNFSLHDPLYGKLFSTYLRPPHTS-RGTSQTPNASSPGNPTALANGTVQAPK
470 480 490 500 510 520
530
pF1KB7 RKPVRKKLD
CCDS32 QKGD
534 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:18:56 2016 done: Fri Nov 4 06:18:57 2016
Total Scan time: 3.530 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]