Result of FASTA (omim) for
pFN21AB7173
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7173, 530 aa
1>>>pF1KB7173 530 - 530 aa - 530 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.7977+/-0.000476; mu= -22.0061+/- 0.030
mean_var=477.6344+/-98.408, 0's: 0 Z-trim(122.0): 31 B-trim: 1344 in 1/58
Lambda= 0.058685
statistics sampled from 39329 (39366) to 39329 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.462), width: 16
Scan time: 12.520
The best scores are: opt bits E(85289)
NP_001166214 (OMIM: 300217) retinoic acid-induced ( 530) 3542 314.5 5.2e-85
NP_001166210 (OMIM: 300217) retinoic acid-induced ( 530) 3542 314.5 5.2e-85
NP_068557 (OMIM: 300217) retinoic acid-induced pro ( 530) 3542 314.5 5.2e-85
XP_006724522 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
XP_011543742 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
XP_011543741 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
XP_011543743 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
XP_006724523 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
NP_001166203 (OMIM: 300217) retinoic acid-induced ( 480) 2926 262.3 2.4e-69
>>NP_001166214 (OMIM: 300217) retinoic acid-induced prot (530 aa)
initn: 3542 init1: 3542 opt: 3542 Z-score: 1647.2 bits: 314.5 E(85289): 5.2e-85
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
490 500 510 520 530
>>NP_001166210 (OMIM: 300217) retinoic acid-induced prot (530 aa)
initn: 3542 init1: 3542 opt: 3542 Z-score: 1647.2 bits: 314.5 E(85289): 5.2e-85
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
490 500 510 520 530
>>NP_068557 (OMIM: 300217) retinoic acid-induced protein (530 aa)
initn: 3542 init1: 3542 opt: 3542 Z-score: 1647.2 bits: 314.5 E(85289): 5.2e-85
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
490 500 510 520 530
>>XP_006724522 (OMIM: 300217) PREDICTED: retinoic acid-i (530 aa)
initn: 3538 init1: 3538 opt: 3538 Z-score: 1645.4 bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
490 500 510 520 530
>>XP_011543742 (OMIM: 300217) PREDICTED: retinoic acid-i (530 aa)
initn: 3538 init1: 3538 opt: 3538 Z-score: 1645.4 bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
490 500 510 520 530
>>XP_011543741 (OMIM: 300217) PREDICTED: retinoic acid-i (530 aa)
initn: 3538 init1: 3538 opt: 3538 Z-score: 1645.4 bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
490 500 510 520 530
>>XP_011543743 (OMIM: 300217) PREDICTED: retinoic acid-i (530 aa)
initn: 3538 init1: 3538 opt: 3538 Z-score: 1645.4 bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
490 500 510 520 530
>>XP_006724523 (OMIM: 300217) PREDICTED: retinoic acid-i (530 aa)
initn: 3538 init1: 3538 opt: 3538 Z-score: 1645.4 bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
490 500 510 520 530
>>NP_001166203 (OMIM: 300217) retinoic acid-induced prot (480 aa)
initn: 2926 init1: 2926 opt: 2926 Z-score: 1366.0 bits: 262.3 E(85289): 2.4e-69
Smith-Waterman score: 3109; 90.6% identity (90.6% similar) in 530 aa overlap (1-530:1-480)
10 20 30 40 50 60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLV--------------
10 20 30 40
70 80 90 100 110 120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
::::::::::::::::::::::::
NP_001 ------------------------------------EGSSAPELNPNGNATYVMTTQGPV
50 60 70
130 140 150 160 170 180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
80 90 100 110 120 130
190 200 210 220 230 240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
380 390 400 410 420 430
490 500 510 520 530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
440 450 460 470 480
530 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:36:57 2016 done: Fri Nov 4 05:36:58 2016
Total Scan time: 12.520 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]