(Circular) (Six-base) MAPSORT of: pFN21AB7116.seq Check: 3531 from: 1 to: 5545 pFN21AB7116 5545 bp With 182 enzymes: SgfI * January 16, 2009 15:26 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3355 278 Size: 53 83 186 936 1819 2468 Fragments arranged by size: 2468 1819 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2888 1937 Size: 951 4594 Acc65I G'GTAC_C Cuts at: 2866 2866 Size: 5545 AclI AA'CG_TT Cuts at: 1563 3672 4045 1563 Size: 2109 373 3063 Fragments arranged by size: 3063 2109 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3608 4992 5260 1632 Size: 1976 1384 268 1917 Fragments arranged by size: 1976 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5348 AflIII A'CryG_T Cuts at: 1203 4444 5421 1203 Size: 3241 977 1327 Fragments arranged by size: 3241 1327 977 AgeI A'CCGG_T Cuts at: 4376 4376 Size: 5545 AhdI GACnn_n'nnGTC Cuts at: 4274 4274 Size: 5545 AleI CACnn'nnGTG Cuts at: 1166 2041 1166 Size: 875 4670 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5545 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2690 2722 2690 Size: 32 5513 AlwNI CAG_nnn'CTG Cuts at: 3288 4860 3288 Size: 1572 3973 ApaLI G'TGCA_C Cuts at: 2253 3602 4758 2253 Size: 1349 1156 3040 Fragments arranged by size: 3040 1349 1156 ApoI r'AATT_y Cuts at: 1493 2522 2854 3080 3232 5341 1493 Size: 1029 332 226 152 2109 1697 Fragments arranged by size: 2109 1697 1029 332 226 152 AseI AT'TA_AT Cuts at: 160 1032 4099 160 Size: 872 3067 1606 Fragments arranged by size: 3067 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5545 AvaI C'yCGr_G Cuts at: 1870 1943 2499 2870 1870 Size: 73 556 371 4545 Fragments arranged by size: 4545 556 371 73 BamHI G'GATC_C Cuts at: 2875 3242 2875 Size: 367 5178 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2465 2740 2866 4321 618 Size: 325 217 627 678 275 126 1455 1842 Fragments arranged by size: 1842 1455 678 627 325 275 217 126 BanII G_rGCy'C Cuts at: 1391 2446 2500 2552 2864 1391 Size: 1055 54 52 312 4072 Fragments arranged by size: 4072 1055 312 54 52 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2480 928 Size: 971 581 3993 Fragments arranged by size: 3993 971 581 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3736 3770 1903 Size: 34 1799 34 3678 Fragments arranged by size: 3678 1799 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2355 2447 3437 4647 2355 Size: 92 990 1210 3253 Fragments arranged by size: 3253 1210 990 92 BclI T'GATC_A Cuts at: 1548 1548 Size: 5545 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2411 2749 4156 Size: 107 122 71 631 605 739 338 1407 Cuts at: 4156 136 Size: 1525 Fragments arranged by size: 1525 1407 739 631 605 338 122 107 71 BglII A'GATC_T Cuts at: 5540 5540 Size: 5545 BlpI GC'TnA_GC Cuts at: 2962 2962 Size: 5545 Bme1580I G_kGCm'C Cuts at: 1790 2257 2468 2745 3606 4762 1790 Size: 467 211 277 861 1156 2573 Fragments arranged by size: 2573 1156 861 467 277 211 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5545 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2328 3276 4234 Size: 416 53 83 399 24 911 948 958 Cuts at: 4234 442 Size: 1753 Fragments arranged by size: 1753 958 948 911 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5545 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2190 2399 2591 4205 1239 Size: 951 209 192 1614 2579 Fragments arranged by size: 2579 1614 951 209 192 Bpu10I CC'TnA_GC Cuts at: 2295 2295 Size: 5545 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3670 4535 4833 3670 Size: 865 298 4382 Fragments arranged by size: 4382 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4208 882 Size: 617 2709 2219 Fragments arranged by size: 2709 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3336 493 Size: 711 2132 2702 Fragments arranged by size: 2702 2132 711 BsaBI GATnn'nnATC Cuts at: 5539 5539 Size: 5545 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3352 3734 4369 275 Size: 53 83 186 936 1819 382 635 1451 Fragments arranged by size: 1819 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3978 4376 4650 4797 5208 3978 Size: 398 274 147 411 4315 Fragments arranged by size: 4315 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2690 2720 1178 Size: 30 165 30 1287 30 4003 Fragments arranged by size: 4003 1287 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2396 2399 1186 Size: 1210 3 4332 Fragments arranged by size: 4332 1210 3 BseYI C'CCAG_C Cuts at: 2809 4748 5244 2809 Size: 1939 496 3110 Fragments arranged by size: 3110 1939 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2806 1163 Size: 573 1070 3902 Fragments arranged by size: 3902 1070 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2995 3756 4784 1540 Size: 275 186 994 761 1028 2301 Fragments arranged by size: 2301 1028 994 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2257 2500 3606 3691 4762 2257 Size: 243 1106 85 1071 3040 Fragments arranged by size: 3040 1106 1071 243 85 BsmI GAATG_Cn' Cuts at: 3056 3149 3056 Size: 93 5452 BsmBI CGTCTCn'nnnn_ Cuts at: 2453 2453 Size: 5545 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2257 2446 2468 2500 2552 2745 2864 Size: 399 467 189 22 32 52 193 119 Cuts at: 2864 3606 3691 4762 1391 Size: 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 467 399 193 189 119 85 52 32 22 BspEI T'CCGG_A Cuts at: 5208 5208 Size: 5545 BspHI T'CATG_A Cuts at: 3434 5164 3434 Size: 1730 3815 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2900 844 Size: 2056 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3432 1394 Size: 429 1609 3507 Fragments arranged by size: 3507 1609 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4040 4214 65 Size: 1183 2792 174 1396 Fragments arranged by size: 2792 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4189 4376 1700 Size: 110 2379 187 2869 Fragments arranged by size: 2869 2379 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5545 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5545 BssSI C'ACGA_G Cuts at: 3605 4617 3605 Size: 1012 4533 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5545 BstBI TT'CG_AA Cuts at: 4349 4349 Size: 5545 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5545 BstYI r'GATC_y Cuts at: 1972 2289 2875 3242 3627 3644 5096 5182 5194 Size: 317 586 367 385 17 1452 86 12 Cuts at: 5194 5540 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 586 385 367 346 317 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2511 513 Size: 552 939 507 3547 Fragments arranged by size: 3547 939 552 507 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4806 Fragments arranged by size: 4806 683 56 BtsI GCAGTG_nn' Cuts at: 2420 2716 3061 3855 3875 2420 Size: 296 345 794 20 4090 Fragments arranged by size: 4090 794 345 296 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5545 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5510 DraI TTT'AAA Cuts at: 2849 2849 Size: 5545 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4552 809 Size: 507 3236 1802 Fragments arranged by size: 3236 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2007 2651 2685 Size: 54 1425 50 275 18 177 644 34 Cuts at: 2685 2992 3881 5510 8 Size: 307 889 1629 43 Fragments arranged by size: 1629 1425 889 644 307 275 177 54 50 43 34 18 EagI C'GGCC_G Cuts at: 1537 1812 2992 1537 Size: 275 1180 4090 Fragments arranged by size: 4090 1180 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2335 2557 3475 1353 Size: 982 222 918 3423 Fragments arranged by size: 3423 982 918 222 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2116 2190 4132 4506 4652 387 Size: 1064 138 527 74 1942 374 146 1280 Fragments arranged by size: 1942 1280 1064 527 374 146 138 74 EcoICRI GAG'CTC Cuts at: 2498 2498 Size: 5545 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2190 2399 2591 3608 4205 4992 5260 Size: 393 558 209 192 1017 597 787 268 Cuts at: 5260 1239 Size: 1524 Fragments arranged by size: 1524 1017 787 597 558 393 268 209 192 EcoNI CCTnn'n_nnAGG Cuts at: 2381 2381 Size: 5545 EcoRI G'AATT_C Cuts at: 2854 3232 2854 Size: 378 5167 FspI TGC'GCA Cuts at: 4051 4051 Size: 5545 HaeII r_GCGC'y Cuts at: 1678 4692 1678 Size: 3014 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2564 2596 4186 4218 4260 Size: 32 135 32 992 32 1590 32 42 Cuts at: 4260 4292 1373 Size: 32 2626 Fragments arranged by size: 2626 1590 992 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2071 2889 3135 669 Size: 988 281 133 818 246 3079 Fragments arranged by size: 3079 988 818 281 246 133 HindIII A'AGCT_T Cuts at: 748 748 Size: 5545 HpaI GTT'AAC Cuts at: 3135 3135 Size: 5545 KpnI G_GTAC'C Cuts at: 2870 2870 Size: 5545 MfeI C'AATT_G Cuts at: 3144 3144 Size: 5545 MluI A'CGCG_T Cuts at: 5421 5421 Size: 5545 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4659 4843 1305 Size: 3354 184 2007 Fragments arranged by size: 3354 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2009 10 Size: 54 1425 343 177 3546 Fragments arranged by size: 3546 1425 343 177 54 MslI CAynn'nnrTG Cuts at: 518 1166 2041 3503 3862 4021 518 Size: 648 875 1462 359 159 2042 Fragments arranged by size: 2042 1462 875 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2961 3638 4786 5031 1606 Size: 1355 677 1148 245 2120 Fragments arranged by size: 2120 1355 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4054 Fragments arranged by size: 4054 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5545 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5545 NotI GC'GGCC_GC Cuts at: 2992 2992 Size: 5545 NspI r_CATG'y Cuts at: 1132 1229 2903 4448 1132 Size: 97 1674 1545 2229 Fragments arranged by size: 2229 1674 1545 97 PasI CC'CwG_GG Cuts at: 1348 2164 1348 Size: 816 4729 PciI A'CATG_T Cuts at: 4444 4444 Size: 5545 PflMI CCAn_nnn'nTGG Cuts at: 1108 2170 1108 Size: 1062 4483 PmeI GTTT'AAAC Cuts at: 2849 2849 Size: 5545 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2690 2722 3614 3646 5127 5159 2690 Size: 32 892 32 1481 32 3076 Fragments arranged by size: 3076 1481 892 32 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5545 PsiI TTA'TAA Cuts at: 3115 3115 Size: 5545 PspXI vC'TCGA_Gb Cuts at: 2499 2499 Size: 5545 PstI C_TGCA'G Cuts at: 830 2157 2304 2723 2897 830 Size: 1327 147 419 174 3478 Fragments arranged by size: 3478 1327 419 174 147 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5545 SacI G_AGCT'C Cuts at: 2500 2500 Size: 5545 SalI G'TCGA_C Cuts at: 1936 2887 1936 Size: 951 4594 SapI GCTCTTCn'nnn_ Cuts at: 2557 2557 Size: 5545 SbfI CC_TGCA'GG Cuts at: 2897 2897 Size: 5545 ScaI AGT'ACT Cuts at: 3793 5505 3793 Size: 1712 3833 SfcI C'TryA_G Cuts at: 826 1045 2153 2300 2719 2893 4028 4709 4900 Size: 219 1108 147 419 174 1135 681 191 Cuts at: 4900 826 Size: 1471 Fragments arranged by size: 1471 1135 1108 681 419 219 191 174 147 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5545 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5545 SmaI CCC'GGG Cuts at: 1872 2872 1872 Size: 1000 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2499 3649 4550 4812 820 Size: 197 926 556 1150 901 262 1553 Fragments arranged by size: 1553 1150 926 901 556 262 197 SnaBI TAC'GTA Cuts at: 493 3336 493 Size: 2843 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5545 SphI G_CATG'C Cuts at: 1132 2903 1132 Size: 1771 3774 SspI AAT'ATT Cuts at: 5 52 3469 5 Size: 47 3417 2081 Fragments arranged by size: 3417 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5545 StyI C'CwwG_G Cuts at: 513 1065 2004 2130 2594 2984 513 Size: 552 939 126 464 390 3074 Fragments arranged by size: 3074 939 552 464 390 126 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2161 2272 3572 3589 3742 3927 4372 Size: 1255 581 111 1300 17 153 185 445 Cuts at: 4372 325 Size: 1498 Fragments arranged by size: 1498 1300 1255 581 445 185 153 111 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3791 5503 96 Size: 274 80 33 51 1443 1814 1712 138 Fragments arranged by size: 1814 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5505 5537 5505 Size: 32 5513 Tth111I GACn'n_nGTC Cuts at: 1316 2148 1316 Size: 832 4713 XbaI T'CTAG_A Cuts at: 2881 2881 Size: 5545 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2680 2680 Size: 5545 XhoI C'TCGA_G Cuts at: 1943 2499 1943 Size: 556 4989 XmaI C'CCGG_G Cuts at: 1870 2870 1870 Size: 1000 4545 XmnI GAAnn'nnTTC Cuts at: 3674 3674 Size: 5545 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3353 276 Size: 53 83 186 936 1819 2468 Fragments arranged by size: 2468 1819 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspXI PstI PvuI SacI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BstXI BstZ17I Bsu36I DraIII EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PsrI PvuII RsrII SacII SanDI SexAI SfiI SfoI SrfI SwaI