Result of FASTA (omim) for
pFN21AB5554
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5554, 298 aa
1>>>pF1KB5554 298 - 298 aa - 298 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9544+/-0.000593; mu= 1.3655+/- 0.036
mean_var=161.6034+/-33.050, 0's: 0 Z-trim(110.6): 177 B-trim: 669 in 2/51
Lambda= 0.100890
statistics sampled from 18736 (18957) to 18736 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.222), width: 16
Scan time: 7.120
The best scores are: opt bits E(85289)
NP_005616 (OMIM: 602217) syntenin-1 isoform 1 [Hom ( 298) 1923 292.5 6.5e-79
NP_001007068 (OMIM: 602217) syntenin-1 isoform 1 [ ( 298) 1923 292.5 6.5e-79
XP_011515873 (OMIM: 602217) PREDICTED: syntenin-1 ( 318) 1923 292.6 6.9e-79
XP_016869216 (OMIM: 602217) PREDICTED: syntenin-1 ( 319) 1923 292.6 6.9e-79
NP_001007071 (OMIM: 602217) syntenin-1 isoform 3 [ ( 297) 1904 289.8 4.4e-78
NP_001007070 (OMIM: 602217) syntenin-1 isoform 3 [ ( 297) 1904 289.8 4.4e-78
NP_001317466 (OMIM: 602217) syntenin-1 isoform 4 [ ( 318) 1904 289.8 4.7e-78
NP_001007069 (OMIM: 602217) syntenin-1 isoform 2 [ ( 292) 1865 284.1 2.2e-76
XP_011519798 (OMIM: 602712) PREDICTED: amyloid bet ( 441) 214 43.9 0.00068
XP_011519797 (OMIM: 602712) PREDICTED: amyloid bet ( 453) 214 43.9 0.00069
XP_016877606 (OMIM: 602712) PREDICTED: amyloid bet ( 737) 214 44.1 0.001
XP_016877604 (OMIM: 602712) PREDICTED: amyloid bet ( 737) 214 44.1 0.001
XP_016877605 (OMIM: 602712) PREDICTED: amyloid bet ( 737) 214 44.1 0.001
XP_016877602 (OMIM: 602712) PREDICTED: amyloid bet ( 737) 214 44.1 0.001
XP_016877603 (OMIM: 602712) PREDICTED: amyloid bet ( 737) 214 44.1 0.001
NP_001123886 (OMIM: 602712) amyloid beta A4 precur ( 737) 214 44.1 0.001
XP_011519795 (OMIM: 602712) PREDICTED: amyloid bet ( 739) 214 44.1 0.001
XP_016877599 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877591 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_011519791 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877594 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877597 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877600 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877592 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877598 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_011519790 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877595 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877590 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_011519793 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877593 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_011519792 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_011519794 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877601 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
XP_016877596 (OMIM: 602712) PREDICTED: amyloid bet ( 749) 214 44.1 0.001
NP_005494 (OMIM: 602712) amyloid beta A4 precursor ( 749) 214 44.1 0.001
XP_005252025 (OMIM: 602414) PREDICTED: amyloid bet ( 826) 214 44.1 0.0011
XP_016870159 (OMIM: 602414) PREDICTED: amyloid bet ( 837) 214 44.1 0.0011
XP_011516919 (OMIM: 602414) PREDICTED: amyloid bet ( 837) 214 44.1 0.0011
NP_001154 (OMIM: 602414) amyloid beta A4 precursor ( 837) 214 44.1 0.0011
NP_004877 (OMIM: 604262) amyloid beta A4 precursor ( 575) 197 41.5 0.0047
>>NP_005616 (OMIM: 602217) syntenin-1 isoform 1 [Homo sa (298 aa)
initn: 1923 init1: 1923 opt: 1923 Z-score: 1537.7 bits: 292.5 E(85289): 6.5e-79
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
190 200 210 220 230 240
250 260 270 280 290
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
250 260 270 280 290
>>NP_001007068 (OMIM: 602217) syntenin-1 isoform 1 [Homo (298 aa)
initn: 1923 init1: 1923 opt: 1923 Z-score: 1537.7 bits: 292.5 E(85289): 6.5e-79
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
190 200 210 220 230 240
250 260 270 280 290
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
250 260 270 280 290
>>XP_011515873 (OMIM: 602217) PREDICTED: syntenin-1 isof (318 aa)
initn: 1923 init1: 1923 opt: 1923 Z-score: 1537.3 bits: 292.6 E(85289): 6.9e-79
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:21-318)
10 20 30 40
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIP
::::::::::::::::::::::::::::::::::::::::
XP_011 MIKLWTNRDLHIIVMVNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB5 HDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGND
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB5 VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 INGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB5 IVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIK
250 260 270 280 290 300
290
pF1KB5 RMAPSIMKSLMDHTIPEV
::::::::::::::::::
XP_011 RMAPSIMKSLMDHTIPEV
310
>>XP_016869216 (OMIM: 602217) PREDICTED: syntenin-1 isof (319 aa)
initn: 1923 init1: 1923 opt: 1923 Z-score: 1537.3 bits: 292.6 E(85289): 6.9e-79
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:22-319)
10 20 30
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
:::::::::::::::::::::::::::::::::::::::
XP_016 MIKLWTNRDLHIIVMVKNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
250 260 270 280 290 300
280 290
pF1KB5 KRMAPSIMKSLMDHTIPEV
:::::::::::::::::::
XP_016 KRMAPSIMKSLMDHTIPEV
310
>>NP_001007071 (OMIM: 602217) syntenin-1 isoform 3 [Homo (297 aa)
initn: 1902 init1: 1401 opt: 1904 Z-score: 1522.8 bits: 289.8 E(85289): 4.4e-78
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:1-297)
10 20 30 40 50 60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
180 190 200 210 220 230
250 260 270 280 290
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
240 250 260 270 280 290
>>NP_001007070 (OMIM: 602217) syntenin-1 isoform 3 [Homo (297 aa)
initn: 1902 init1: 1401 opt: 1904 Z-score: 1522.8 bits: 289.8 E(85289): 4.4e-78
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:1-297)
10 20 30 40 50 60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
180 190 200 210 220 230
250 260 270 280 290
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
240 250 260 270 280 290
>>NP_001317466 (OMIM: 602217) syntenin-1 isoform 4 [Homo (318 aa)
initn: 1902 init1: 1401 opt: 1904 Z-score: 1522.4 bits: 289.8 E(85289): 4.7e-78
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:22-318)
10 20 30
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
:::::::::::::::::::::::::::::::::::::::
NP_001 MIKLWTNRDLHIIVMVKNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_001 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGN
70 80 90 100 110
100 110 120 130 140 150
pF1KB5 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB5 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
240 250 260 270 280 290
280 290
pF1KB5 KRMAPSIMKSLMDHTIPEV
:::::::::::::::::::
NP_001 KRMAPSIMKSLMDHTIPEV
300 310
>>NP_001007069 (OMIM: 602217) syntenin-1 isoform 2 [Homo (292 aa)
initn: 1821 init1: 1821 opt: 1865 Z-score: 1492.2 bits: 284.1 E(85289): 2.2e-76
Smith-Waterman score: 1865; 98.0% identity (98.0% similar) in 298 aa overlap (1-298:1-292)
10 20 30 40 50 60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLYPSLEDLK------AQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
180 190 200 210 220 230
250 260 270 280 290
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
240 250 260 270 280 290
>>XP_011519798 (OMIM: 602712) PREDICTED: amyloid beta A4 (441 aa)
initn: 187 init1: 145 opt: 214 Z-score: 190.9 bits: 43.9 E(85289): 0.00068
Smith-Waterman score: 214; 28.0% identity (61.1% similar) in 157 aa overlap (131-284:282-438)
110 120 130 140 150
pF1KB5 VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL
:: ... .. ..::. : : .:::..
XP_011 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIM
260 270 280 290 300 310
160 170 180 190 200 210
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGE-KITMTIRDRPFERTITMHK-DSTGHVGFIFKNGK
.::: . .: . ..: .. .. ..: . : :. ... : ..:: .::
XP_011 SINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGI
320 330 340 350 360 370
220 230 240 250 260 270
pF1KB5 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEH
: :... . : :.:. . : : :::::.:.. .:.. ::.: . . ::: .:.
XP_011 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRL
380 390 400 410 420 430
280 290
pF1KB5 IIKRMAPSIMKSLMDHTIPEV
. . .:
XP_011 LTGQETPLYI
440
>>XP_011519797 (OMIM: 602712) PREDICTED: amyloid beta A4 (453 aa)
initn: 187 init1: 145 opt: 214 Z-score: 190.7 bits: 43.9 E(85289): 0.00069
Smith-Waterman score: 214; 28.0% identity (61.1% similar) in 157 aa overlap (131-284:294-450)
110 120 130 140 150
pF1KB5 VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL
:: ... .. ..::. : : .:::..
XP_011 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIM
270 280 290 300 310 320
160 170 180 190 200 210
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGE-KITMTIRDRPFERTITMHK-DSTGHVGFIFKNGK
.::: . .: . ..: .. .. ..: . : :. ... : ..:: .::
XP_011 SINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGI
330 340 350 360 370 380
220 230 240 250 260 270
pF1KB5 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEH
: :... . : :.:. . : : :::::.:.. .:.. ::.: . . ::: .:.
XP_011 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRL
390 400 410 420 430 440
280 290
pF1KB5 IIKRMAPSIMKSLMDHTIPEV
. . .:
XP_011 LTGQETPLYI
450
298 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:52:52 2016 done: Fri Nov 4 03:52:53 2016
Total Scan time: 7.120 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]