Result of FASTA (omim) for
pFN21AB3413
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3413, 339 aa
1>>>pF1KB3413 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4989+/-0.00044; mu= 10.2187+/- 0.027
mean_var=165.0893+/-36.709, 0's: 0 Z-trim(115.1): 270 B-trim: 280 in 1/51
Lambda= 0.099819
statistics sampled from 24967 (25314) to 24967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.297), width: 16
Scan time: 8.000
The best scores are: opt bits E(85289)
NP_004795 (OMIM: 604333) probable cytosolic iron-s ( 339) 2444 364.4 1.9e-100
NP_001308124 (OMIM: 270710,602342,608628,616944) F ( 427) 398 69.9 1.1e-11
XP_016862674 (OMIM: 270710,602342,608628,616944) P ( 514) 398 70.0 1.3e-11
XP_006713809 (OMIM: 270710,602342,608628,616944) P ( 514) 398 70.0 1.3e-11
XP_011511445 (OMIM: 270710,602342,608628,616944) P ( 514) 398 70.0 1.3e-11
NP_001308122 (OMIM: 270710,602342,608628,616944) F ( 514) 398 70.0 1.3e-11
XP_011511443 (OMIM: 270710,602342,608628,616944) P ( 514) 398 70.0 1.3e-11
NP_001308123 (OMIM: 270710,602342,608628,616944) F ( 514) 398 70.0 1.3e-11
NP_078941 (OMIM: 270710,602342,608628,616944) F-bo ( 514) 398 70.0 1.3e-11
XP_005247832 (OMIM: 270710,602342,608628,616944) P ( 514) 398 70.0 1.3e-11
XP_011511444 (OMIM: 270710,602342,608628,616944) P ( 514) 398 70.0 1.3e-11
NP_150600 (OMIM: 400033) F-box-like/WD repeat-cont ( 522) 373 66.4 1.5e-10
NP_599021 (OMIM: 400033) F-box-like/WD repeat-cont ( 522) 373 66.4 1.5e-10
NP_599020 (OMIM: 400033) F-box-like/WD repeat-cont ( 522) 373 66.4 1.5e-10
XP_005262629 (OMIM: 400033) PREDICTED: F-box-like/ ( 536) 373 66.4 1.6e-10
XP_016885576 (OMIM: 400033) PREDICTED: F-box-like/ ( 540) 373 66.4 1.6e-10
XP_016885575 (OMIM: 400033) PREDICTED: F-box-like/ ( 577) 373 66.5 1.6e-10
XP_011543873 (OMIM: 300196) PREDICTED: F-box-like/ ( 526) 369 65.8 2.3e-10
NP_001132940 (OMIM: 300196) F-box-like/WD repeat-c ( 526) 369 65.8 2.3e-10
NP_001132939 (OMIM: 300196) F-box-like/WD repeat-c ( 526) 369 65.8 2.3e-10
NP_005638 (OMIM: 300196) F-box-like/WD repeat-cont ( 577) 369 65.9 2.5e-10
NP_001132938 (OMIM: 300196) F-box-like/WD repeat-c ( 577) 369 65.9 2.5e-10
XP_016880191 (OMIM: 601545,607432) PREDICTED: plat ( 345) 342 61.7 2.6e-09
XP_016880190 (OMIM: 601545,607432) PREDICTED: plat ( 410) 342 61.8 2.9e-09
NP_000421 (OMIM: 601545,607432) platelet-activatin ( 410) 342 61.8 2.9e-09
XP_016880188 (OMIM: 601545,607432) PREDICTED: plat ( 410) 342 61.8 2.9e-09
XP_016880189 (OMIM: 601545,607432) PREDICTED: plat ( 410) 342 61.8 2.9e-09
XP_011522205 (OMIM: 601545,607432) PREDICTED: plat ( 428) 342 61.8 3e-09
XP_011522203 (OMIM: 601545,607432) PREDICTED: plat ( 428) 342 61.8 3e-09
XP_011522204 (OMIM: 601545,607432) PREDICTED: plat ( 428) 342 61.8 3e-09
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 318 58.2 2.7e-08
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 318 58.2 2.7e-08
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 318 58.2 2.7e-08
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 318 58.2 2.7e-08
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390) 318 58.3 3.1e-08
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 318 58.4 3.5e-08
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 318 58.5 3.7e-08
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 318 58.5 3.7e-08
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 318 58.5 3.8e-08
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 318 58.5 3.8e-08
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537) 318 58.5 3.8e-08
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 318 58.5 4e-08
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600) 318 58.6 4.1e-08
NP_078808 (OMIM: 612173) sperm-associated antigen ( 631) 318 58.6 4.2e-08
XP_011510118 (OMIM: 612173) PREDICTED: sperm-assoc ( 592) 309 57.3 1e-07
XP_011510120 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 305 56.7 1.5e-07
XP_011510119 (OMIM: 612173) PREDICTED: sperm-assoc ( 582) 305 56.7 1.5e-07
XP_011510117 (OMIM: 612173) PREDICTED: sperm-assoc ( 592) 305 56.7 1.5e-07
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 295 54.9 2.5e-07
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 295 54.9 2.5e-07
>>NP_004795 (OMIM: 604333) probable cytosolic iron-sulfu (339 aa)
initn: 2444 init1: 2444 opt: 2444 Z-score: 1924.2 bits: 364.4 E(85289): 1.9e-100
Smith-Waterman score: 2444; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
250 260 270 280 290 300
310 320 330
pF1KB3 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
:::::::::::::::::::::::::::::::::::::::
NP_004 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
310 320 330
>>NP_001308124 (OMIM: 270710,602342,608628,616944) F-box (427 aa)
initn: 276 init1: 156 opt: 398 Z-score: 330.6 bits: 69.9 E(85289): 1.1e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:135-382)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
NP_001 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
110 120 130 140 150 160
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
NP_001 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
170 180 190 200 210
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
NP_001 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
220 230 240 250 260 270
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
NP_001 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
280 290 300 310 320 330
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
NP_001 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
340 350 360 370 380 390
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
NP_001 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
400 410 420
>>XP_016862674 (OMIM: 270710,602342,608628,616944) PREDI (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 329.7 bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
XP_016 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
XP_016 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
XP_016 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
XP_016 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
XP_016 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
XP_016 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
>>XP_006713809 (OMIM: 270710,602342,608628,616944) PREDI (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 329.7 bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
XP_006 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
XP_006 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
XP_006 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
XP_006 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
XP_006 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
XP_006 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
>>XP_011511445 (OMIM: 270710,602342,608628,616944) PREDI (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 329.7 bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
XP_011 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
XP_011 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
XP_011 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
XP_011 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
XP_011 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
XP_011 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
>>NP_001308122 (OMIM: 270710,602342,608628,616944) F-box (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 329.7 bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
NP_001 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
NP_001 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
NP_001 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
NP_001 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
NP_001 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
NP_001 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
>>XP_011511443 (OMIM: 270710,602342,608628,616944) PREDI (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 329.7 bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
XP_011 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
XP_011 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
XP_011 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
XP_011 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
XP_011 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
XP_011 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
>>NP_001308123 (OMIM: 270710,602342,608628,616944) F-box (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 329.7 bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
NP_001 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
NP_001 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
NP_001 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
NP_001 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
NP_001 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
NP_001 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
>>NP_078941 (OMIM: 270710,602342,608628,616944) F-box-li (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 329.7 bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
NP_078 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
NP_078 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
NP_078 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
NP_078 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
NP_078 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
NP_078 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
>>XP_005247832 (OMIM: 270710,602342,608628,616944) PREDI (514 aa)
initn: 276 init1: 156 opt: 398 Z-score: 329.7 bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
XP_005 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
200 210 220 230 240
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. ::.. ::. : :: :: :.:
XP_005 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
250 260 270 280 290 300
100 110 120
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : :.:::::
XP_005 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
310 320 330 340 350 360
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
.:: : .. .: . ... :: :..:.... . : :. .:::::.:.
XP_005 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
370 380 390 400 410 420
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. . : .: :: :. :.:.::.:.:. ::: : :. :.::
XP_005 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
430 440 450 460 470 480
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
XP_005 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
490 500 510
339 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:20:54 2016 done: Fri Nov 4 02:20:55 2016
Total Scan time: 8.000 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]