Result of FASTA (omim) for
pFN21AB3406
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3406, 367 aa
1>>>pF1KB3406 367 - 367 aa - 367 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5955+/-0.000354; mu= 15.9519+/- 0.022
mean_var=76.3896+/-15.808, 0's: 0 Z-trim(114.7): 35 B-trim: 833 in 1/51
Lambda= 0.146743
statistics sampled from 24741 (24776) to 24741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.29), width: 16
Scan time: 7.810
The best scores are: opt bits E(85289)
NP_004138 (OMIM: 603952) developmentally-regulated ( 367) 2399 517.2 2.4e-146
NP_001379 (OMIM: 602986) developmentally-regulated ( 364) 1351 295.3 1.5e-79
NP_001317073 (OMIM: 602986) developmentally-regula ( 343) 1187 260.6 3.9e-69
XP_011522006 (OMIM: 602986) PREDICTED: development ( 364) 1107 243.6 5.2e-64
XP_005256556 (OMIM: 602986) PREDICTED: development ( 385) 1107 243.7 5.4e-64
XP_005256557 (OMIM: 602986) PREDICTED: development ( 304) 789 176.3 8.2e-44
XP_016879785 (OMIM: 602986) PREDICTED: development ( 220) 737 165.2 1.3e-40
XP_016879786 (OMIM: 602986) PREDICTED: development ( 220) 737 165.2 1.3e-40
XP_011522008 (OMIM: 602986) PREDICTED: development ( 241) 493 113.5 5e-25
XP_011522009 (OMIM: 602986) PREDICTED: development ( 241) 493 113.5 5e-25
XP_005260450 (OMIM: 610919) PREDICTED: mitochondri ( 406) 250 62.2 2.3e-09
XP_011527078 (OMIM: 610919) PREDICTED: mitochondri ( 406) 250 62.2 2.3e-09
XP_016883295 (OMIM: 610919) PREDICTED: mitochondri ( 406) 250 62.2 2.3e-09
NP_056481 (OMIM: 610919) mitochondrial ribosome-as ( 406) 250 62.2 2.3e-09
XP_006723837 (OMIM: 610919) PREDICTED: mitochondri ( 422) 250 62.2 2.4e-09
XP_016883294 (OMIM: 610919) PREDICTED: mitochondri ( 434) 250 62.3 2.5e-09
NP_149098 (OMIM: 610920) GTP-binding protein 10 is ( 387) 207 53.1 1.2e-06
NP_001036182 (OMIM: 610920) GTP-binding protein 10 ( 308) 178 46.9 7.2e-05
>>NP_004138 (OMIM: 603952) developmentally-regulated GTP (367 aa)
initn: 2399 init1: 2399 opt: 2399 Z-score: 2748.4 bits: 517.2 E(85289): 2.4e-146
Smith-Waterman score: 2399; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KB3 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
310 320 330 340 350 360
pF1KB3 VIQIVKK
:::::::
NP_004 VIQIVKK
>>NP_001379 (OMIM: 602986) developmentally-regulated GTP (364 aa)
initn: 1375 init1: 974 opt: 1351 Z-score: 1549.4 bits: 295.3 E(85289): 1.5e-79
Smith-Waterman score: 1351; 57.6% identity (81.5% similar) in 363 aa overlap (5-367:4-364)
10 20 30 40 50 60
pF1KB3 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
: ::.::: :.::::::::: .:::::::.::: : .:. :. .... ::::::
NP_001 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASS-KGEGFDVM
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
:.::::....:::::::::.:: .... ::.:.::::::: .::::.::::.::::::::
NP_001 KSGDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
::::: .:::::::::::::: ..:...::. : .....:.:::. :::::.. :::
NP_001 IIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIY
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
:: : :::....: .. . . :. :: :::: ::.: .: : . :..:::. :::::
NP_001 FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVY
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :. :::: .:
NP_001 MPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRG
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB3 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
: ::.:. ..: . ..:: : .::..: ..:::::::: :.:..::.:: ::.: ::
NP_001 QRPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHED
300 310 320 330 340 350
pF1KB3 VIQIVKK
:::::::
NP_001 VIQIVKK
360
>>NP_001317073 (OMIM: 602986) developmentally-regulated (343 aa)
initn: 1211 init1: 974 opt: 1187 Z-score: 1362.1 bits: 260.6 E(85289): 3.9e-69
Smith-Waterman score: 1187; 56.1% identity (80.9% similar) in 330 aa overlap (5-334:4-331)
10 20 30 40 50 60
pF1KB3 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
: ::.::: :.::::::::: .:::::::.::: : .:. :. .... ::::::
NP_001 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASS-KGEGFDVM
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
:.::::....:::::::::.:: .... ::.:.::::::: .::::.::::.::::::::
NP_001 KSGDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
::::: .:::::::::::::: ..:...::. : .....:.:::. :::::.. :::
NP_001 IIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIY
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
:: : :::....: .. . . :. :: :::: ::.: .: : . :..:::. :::::
NP_001 FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVY
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :. :::: .:
NP_001 MPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRG
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB3 QLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDED
: ::.:. ..: . ..:: : .::..: ..::
NP_001 QRPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKAPAPSTVRSGWA
300 310 320 330 340
pF1KB3 VIQIVKK
>>XP_011522006 (OMIM: 602986) PREDICTED: developmentally (364 aa)
initn: 1179 init1: 942 opt: 1107 Z-score: 1270.2 bits: 243.6 E(85289): 5.2e-64
Smith-Waterman score: 1135; 52.7% identity (76.1% similar) in 351 aa overlap (5-334:4-352)
10 20 30 40 50 60
pF1KB3 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
: ::.::: :.::::::::: .:::::::.::: : .:. :. .... ::::::
XP_011 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASS-KGEGFDVM
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
:.::::....:::::::::.:: .... ::.:.::::::: .::::.::::.::::::::
XP_011 KSGDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
::::: .:::::::::::::: ..:...::. : .....:.:::. :::::.. :::
XP_011 IIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIY
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
:: : :::....: .. . . :. :: :::: ::.: .: : . :..:::. :::::
XP_011 FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVY
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :. :::: .:
XP_011 MPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRG
240 250 260 270 280 290
310 320 330
pF1KB3 QL---------------------PDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVW
: ::.:. ..: . ..:: : .::..: ..::
XP_011 QSQDGSVGPDVWLTFSPSCPAERPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKAPAPS
300 310 320 330 340 350
340 350 360
pF1KB3 GLSVKHNPQKVGKDHTLEDEDVIQIVKK
XP_011 TVRSGWA
360
>>XP_005256556 (OMIM: 602986) PREDICTED: developmentally (385 aa)
initn: 1343 init1: 942 opt: 1107 Z-score: 1269.8 bits: 243.7 E(85289): 5.4e-64
Smith-Waterman score: 1299; 54.4% identity (77.1% similar) in 384 aa overlap (5-367:4-385)
10 20 30 40 50 60
pF1KB3 MSSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVA
: ::.::: :.::::::::: .:::::::.::: : .:. :. .... ::::::
XP_005 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASS-KGEGFDVM
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 KTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG
:.::::....:::::::::.:: .... ::.:.::::::: .::::.::::.::::::::
XP_005 KSGDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 IIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIG
::::: .:::::::::::::: ..:...::. : .....:.:::. :::::.. :::
XP_005 IIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIY
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 FKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVY
:: : :::....: .. . . :. :: :::: ::.: .: : . :..:::. :::::
XP_005 FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVY
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 IPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKG
.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :. :::: .:
XP_005 MPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRG
240 250 260 270 280 290
310 320 330
pF1KB3 QL---------------------PDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVW
: ::.:. ..: . ..:: : .::..: ..:::::::
XP_005 QSQDGSVGPDVWLTFSPSCPAERPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKYALVW
300 310 320 330 340 350
340 350 360
pF1KB3 GLSVKHNPQKVGKDHTLEDEDVIQIVKK
: :.:..::.:: ::.: :::::::::
XP_005 GTSTKYSPQRVGLTHTMEHEDVIQIVKK
360 370 380
>>XP_005256557 (OMIM: 602986) PREDICTED: developmentally (304 aa)
initn: 1026 init1: 787 opt: 789 Z-score: 907.5 bits: 176.3 E(85289): 8.2e-44
Smith-Waterman score: 981; 51.8% identity (74.8% similar) in 305 aa overlap (84-367:1-304)
60 70 80 90 100 110
pF1KB3 GEGFDVAKTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKI
.... ::.:.::::::: .::::.::::.:
XP_005 MTSTASEAASYEFTTLTCIPGVIEYKGANI
10 20 30
120 130 140 150 160 170
pF1KB3 QLLDLPGIIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLN
:::::::::::: .:::::::::::::: ..:...::. : .....:.:::. :::::
XP_005 QLLDLPGIIEGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLN
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB3 SKPPNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDV
.. ::: :: : :::....: .. . . :. :: :::: ::.: .: : . :..:::
XP_005 KHKPNIYFKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDV
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB3 VEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVR
. :::::.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :.
XP_005 IVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTC
160 170 180 190 200 210
300 310 320 330
pF1KB3 IYTKPKGQL---------------------PDYTSPVVLPYSRTTVEDFCMKIHKNLIKE
:::: .:: ::.:. ..: . ..:: : .::..: ..
XP_005 IYTKKRGQSQDGSVGPDVWLTFSPSCPAERPDFTDAIIL-RKGASVEHVCHRIHRSLASQ
220 230 240 250 260
340 350 360
pF1KB3 FKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK
:::::::: :.:..::.:: ::.: :::::::::
XP_005 FKYALVWGTSTKYSPQRVGLTHTMEHEDVIQIVKK
270 280 290 300
>>XP_016879785 (OMIM: 602986) PREDICTED: developmentally (220 aa)
initn: 760 init1: 521 opt: 737 Z-score: 850.1 bits: 165.2 E(85289): 1.3e-40
Smith-Waterman score: 737; 50.7% identity (76.5% similar) in 221 aa overlap (147-367:1-220)
120 130 140 150 160 170
pF1KB3 DLPGIIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKP
..::. : .....:.:::. :::::..
XP_016 MMLDATKGEVQRSLLEKELESVGIRLNKHK
10 20 30
180 190 200 210 220 230
pF1KB3 PNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEG
::: :: : :::....: .. . . :. :: :::: ::.: .: : . :..:::. :
XP_016 PNIYFKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVG
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB3 NRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYT
::::.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :. :::
XP_016 NRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYT
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB3 KPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTL
: .:: ::.:. ..: . ..:: : .::..: ..:::::::: :.:..::.:: ::.
XP_016 KKRGQRPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTM
160 170 180 190 200
360
pF1KB3 EDEDVIQIVKK
: :::::::::
XP_016 EHEDVIQIVKK
210 220
>>XP_016879786 (OMIM: 602986) PREDICTED: developmentally (220 aa)
initn: 760 init1: 521 opt: 737 Z-score: 850.1 bits: 165.2 E(85289): 1.3e-40
Smith-Waterman score: 737; 50.7% identity (76.5% similar) in 221 aa overlap (147-367:1-220)
120 130 140 150 160 170
pF1KB3 DLPGIIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKP
..::. : .....:.:::. :::::..
XP_016 MMLDATKGEVQRSLLEKELESVGIRLNKHK
10 20 30
180 190 200 210 220 230
pF1KB3 PNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEG
::: :: : :::....: .. . . :. :: :::: ::.: .: : . :..:::. :
XP_016 PNIYFKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVG
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB3 NRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYT
::::.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :. :::
XP_016 NRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYT
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB3 KPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTL
: .:: ::.:. ..: . ..:: : .::..: ..:::::::: :.:..::.:: ::.
XP_016 KKRGQRPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTM
160 170 180 190 200
360
pF1KB3 EDEDVIQIVKK
: :::::::::
XP_016 EHEDVIQIVKK
210 220
>>XP_011522008 (OMIM: 602986) PREDICTED: developmentally (241 aa)
initn: 728 init1: 489 opt: 493 Z-score: 570.3 bits: 113.5 E(85289): 5e-25
Smith-Waterman score: 685; 46.3% identity (69.8% similar) in 242 aa overlap (147-367:1-241)
120 130 140 150 160 170
pF1KB3 DLPGIIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKP
..::. : .....:.:::. :::::..
XP_011 MMLDATKGEVQRSLLEKELESVGIRLNKHK
10 20 30
180 190 200 210 220 230
pF1KB3 PNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEG
::: :: : :::....: .. . . :. :: :::: ::.: .: : . :..:::. :
XP_011 PNIYFKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVG
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB3 NRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYT
::::.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :. :::
XP_011 NRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYT
100 110 120 130 140 150
300 310 320 330
pF1KB3 KPKGQL---------------------PDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKY
: .:: ::.:. ..: . ..:: : .::..: ..:::
XP_011 KKRGQSQDGSVGPDVWLTFSPSCPAERPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKY
160 170 180 190 200
340 350 360
pF1KB3 ALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK
::::: :.:..::.:: ::.: :::::::::
XP_011 ALVWGTSTKYSPQRVGLTHTMEHEDVIQIVKK
210 220 230 240
>>XP_011522009 (OMIM: 602986) PREDICTED: developmentally (241 aa)
initn: 728 init1: 489 opt: 493 Z-score: 570.3 bits: 113.5 E(85289): 5e-25
Smith-Waterman score: 685; 46.3% identity (69.8% similar) in 242 aa overlap (147-367:1-241)
120 130 140 150 160 170
pF1KB3 DLPGIIEGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKP
..::. : .....:.:::. :::::..
XP_011 MMLDATKGEVQRSLLEKELESVGIRLNKHK
10 20 30
180 190 200 210 220 230
pF1KB3 PNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEG
::: :: : :::....: .. . . :. :: :::: ::.: .: : . :..:::. :
XP_011 PNIYFKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVG
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB3 NRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYT
::::.::.:: :::::::.::.: . . :. : :: . :.: ::: .:.:: :. :::
XP_011 NRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYT
100 110 120 130 140 150
300 310 320 330
pF1KB3 KPKGQL---------------------PDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKY
: .:: ::.:. ..: . ..:: : .::..: ..:::
XP_011 KKRGQSQDGSVGPDVWLTFSPSCPAERPDFTDAIIL-RKGASVEHVCHRIHRSLASQFKY
160 170 180 190 200
340 350 360
pF1KB3 ALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK
::::: :.:..::.:: ::.: :::::::::
XP_011 ALVWGTSTKYSPQRVGLTHTMEHEDVIQIVKK
210 220 230 240
367 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:20:22 2016 done: Fri Nov 4 02:20:23 2016
Total Scan time: 7.810 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]