FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1271, 540 aa
  1>>>pF1KA1271 540 - 540 aa - 540 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.1531+/-0.000399; mu= -23.5740+/- 0.025
 mean_var=458.9941+/-96.353, 0's: 0 Z-trim(123.7): 29  B-trim: 602 in 1/60
 Lambda= 0.059865
 statistics sampled from 43957 (43988) to 43957 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.516), width:  16
 Scan time: 12.190

The best scores are:                                      opt bits E(85289)
NP_065797 (OMIM: 609676) mitochondrial antiviral-s ( 540) 3637 328.4 3.4e-89
NP_001193420 (OMIM: 609676) mitochondrial antivira ( 399) 2628 241.2 4.6e-63


>>NP_065797 (OMIM: 609676) mitochondrial antiviral-signa  (540 aa)
 initn: 3637 init1: 3637 opt: 3637  Z-score: 1722.2  bits: 328.4 E(85289): 3.4e-89
Smith-Waterman score: 3637; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KA1 MPFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MPFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 TLQRRPGWVEYFIAALRGCELVDLADEVASVYQSYQPRTSDRPPDPLEPPSLPAERPGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TLQRRPGWVEYFIAALRGCELVDLADEVASVYQSYQPRTSDRPPDPLEPPSLPAERPGPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 TPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTLSPRAIPRNPDGGPLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTLSPRAIPRNPDGGPLES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SSDLAALSPLTSSGHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQPLARSTPRASRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SSDLAALSPLTSSGHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQPLARSTPRASRL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 PGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESDQAEPIICSSGAEAPANSLPSKVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESDQAEPIICSSGAEAPANSLPSKVPT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 TLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPINSTRAGMVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPINSTRAGMVP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 SKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSENRGLGSELSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSENRGLGSELSK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 PGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVAENPSIQLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVAENPSIQLLE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 GNPGPPADPDGGPRPQADRKFQEREVPCHRPSPGALWLQVAVTGVLVVTLLVVLYRRRLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GNPGPPADPDGGPRPQADRKFQEREVPCHRPSPGALWLQVAVTGVLVVTLLVVLYRRRLH
              490       500       510       520       530       540

>>NP_001193420 (OMIM: 609676) mitochondrial antiviral-si  (399 aa)
 initn: 2628 init1: 2628 opt: 2628  Z-score: 1253.3  bits: 241.2 E(85289): 4.6e-63
Smith-Waterman score: 2628; 100.0% identity (100.0% similar) in 399 aa overlap (142-540:1-399)

             120       130       140       150       160       170 
pF1KA1 LPAERPGPPTPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTLSPRAIPR
                                     ::::::::::::::::::::::::::::::
NP_001                               MPVQETQAPESPGENSEQALQTLSPRAIPR
                                             10        20        30

             180       190       200       210       220       230 
pF1KA1 NPDGGPLESSSDLAALSPLTSSGHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPDGGPLESSSDLAALSPLTSSGHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQPLA
               40        50        60        70        80        90

             240       250       260       270       280       290 
pF1KA1 RSTPRASRLPGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESDQAEPIICSSGAEAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSTPRASRLPGPTGSVVSTGTSFSSSSPGLASAGAAEGKQGAESDQAEPIICSSGAEAPA
              100       110       120       130       140       150

             300       310       320       330       340       350 
pF1KA1 NSLPSKVPTTLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSLPSKVPTTLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPI
              160       170       180       190       200       210

             360       370       380       390       400       410 
pF1KA1 NSTRAGMVPSKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSTRAGMVPSKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSEN
              220       230       240       250       260       270

             420       430       440       450       460       470 
pF1KA1 RGLGSELSKPGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGLGSELSKPGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVA
              280       290       300       310       320       330

             480       490       500       510       520       530 
pF1KA1 ENPSIQLLEGNPGPPADPDGGPRPQADRKFQEREVPCHRPSPGALWLQVAVTGVLVVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENPSIQLLEGNPGPPADPDGGPRPQADRKFQEREVPCHRPSPGALWLQVAVTGVLVVTLL
              340       350       360       370       380       390

             540
pF1KA1 VVLYRRRLH
       :::::::::
NP_001 VVLYRRRLH
                




540 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:27:24 2016 done: Fri Nov  4 01:27:25 2016
 Total Scan time: 12.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]