(Circular) (Six-base) MAPSORT of: pFN21AA1162.seq Check: 7692 from: 1 to: 5752 pFN21AA1162 5752 bp With 182 enzymes: SgfI * April 15, 2010 09:25 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3562 278 Size: 53 83 186 936 2026 2468 Fragments arranged by size: 2468 2026 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3095 1937 Size: 1158 4594 Acc65I G'GTAC_C Cuts at: 3073 3073 Size: 5752 AclI AA'CG_TT Cuts at: 1563 3879 4252 1563 Size: 2316 373 3063 Fragments arranged by size: 3063 2316 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2240 2976 3815 5199 5467 1632 Size: 608 736 839 1384 268 1917 Fragments arranged by size: 1917 1384 839 736 608 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5555 AflIII A'CryG_T Cuts at: 1203 4651 5628 1203 Size: 3448 977 1327 Fragments arranged by size: 3448 1327 977 AgeI A'CCGG_T Cuts at: 4583 4583 Size: 5752 AhdI GACnn_n'nnGTC Cuts at: 4481 4481 Size: 5752 AleI CACnn'nnGTG Cuts at: 1166 2996 1166 Size: 1830 3922 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5752 AlwNI CAG_nnn'CTG Cuts at: 3495 5067 3495 Size: 1572 4180 ApaI G_GGCC'C Cuts at: 2907 2907 Size: 5752 ApaLI G'TGCA_C Cuts at: 3809 4965 3809 Size: 1156 4596 ApoI r'AATT_y Cuts at: 1493 2177 2550 3061 3287 3439 5548 1493 Size: 684 373 511 226 152 2109 1697 Fragments arranged by size: 2109 1697 684 511 373 226 152 AseI AT'TA_AT Cuts at: 160 1032 4306 160 Size: 872 3274 1606 Fragments arranged by size: 3274 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5752 AvaI C'yCGr_G Cuts at: 1870 1943 2084 2928 3077 1870 Size: 73 141 844 149 4545 Fragments arranged by size: 4545 844 149 141 73 BamHI G'GATC_C Cuts at: 3082 3449 3082 Size: 367 5385 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3073 4528 618 Size: 325 217 627 1286 1455 1842 Fragments arranged by size: 1842 1455 1286 627 325 217 BanII G_rGCy'C Cuts at: 1391 2907 3071 1391 Size: 1516 164 4072 Fragments arranged by size: 4072 1516 164 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2397 3012 928 Size: 971 498 615 3668 Fragments arranged by size: 3668 971 615 498 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3943 3977 1903 Size: 34 2006 34 3678 Fragments arranged by size: 3678 2006 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3644 4854 3644 Size: 1210 4542 BclI T'GATC_A Cuts at: 1548 2896 1548 Size: 1348 4404 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4363 136 Size: 107 122 71 631 605 2691 1525 Fragments arranged by size: 2691 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2809 5747 2809 Size: 2938 2814 BlpI GC'TnA_GC Cuts at: 3169 3169 Size: 5752 Bme1580I G_kGCm'C Cuts at: 1790 2907 3813 4969 1790 Size: 1117 906 1156 2573 Fragments arranged by size: 2573 1156 1117 906 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5752 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3483 4441 442 Size: 416 53 83 399 24 2066 958 1753 Fragments arranged by size: 2066 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5752 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4412 1239 Size: 3173 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3034 3877 4742 5040 3034 Size: 843 865 298 3746 Fragments arranged by size: 3746 865 843 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4415 882 Size: 617 2916 2219 Fragments arranged by size: 2916 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3543 493 Size: 711 2339 2702 Fragments arranged by size: 2702 2339 711 BsaBI GATnn'nnATC Cuts at: 5746 5746 Size: 5752 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3559 3941 4576 275 Size: 53 83 186 936 2026 382 635 1451 Fragments arranged by size: 2026 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4185 4583 4857 5004 5415 4185 Size: 398 274 147 411 4522 Fragments arranged by size: 4522 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2150 2180 1178 Size: 30 165 30 747 30 4750 Fragments arranged by size: 4750 747 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2102 2717 2753 2858 2861 2891 2963 1186 Size: 916 615 36 105 3 30 72 3975 Fragments arranged by size: 3975 916 615 105 72 36 30 3 BseYI C'CCAG_C Cuts at: 2329 2983 4955 5451 2329 Size: 654 1972 496 2630 Fragments arranged by size: 2630 1972 654 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5179 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3202 3963 4991 1540 Size: 275 186 1201 761 1028 2301 Fragments arranged by size: 2301 1201 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3813 3898 4969 3813 Size: 85 1071 4596 Fragments arranged by size: 4596 1071 85 BsmI GAATG_Cn' Cuts at: 3263 3356 3263 Size: 93 5659 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2907 3071 3813 3898 4969 1391 Size: 399 1117 164 742 85 1071 2174 Fragments arranged by size: 2174 1117 1071 742 399 164 85 BspEI T'CCGG_A Cuts at: 5415 5415 Size: 5752 BspHI T'CATG_A Cuts at: 3641 5371 3641 Size: 1730 4022 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2403 3107 844 Size: 1559 704 3489 Fragments arranged by size: 3489 1559 704 BsrBI CCG'CTC Cuts at: 1394 1823 3639 1394 Size: 429 1816 3507 Fragments arranged by size: 3507 1816 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4247 4421 65 Size: 1183 2999 174 1396 Fragments arranged by size: 2999 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4396 4583 1700 Size: 110 2586 187 2869 Fragments arranged by size: 2869 2586 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5752 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5752 BssSI C'ACGA_G Cuts at: 3812 4824 3812 Size: 1012 4740 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5752 BstBI TT'CG_AA Cuts at: 2388 4556 2388 Size: 2168 3584 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5752 BstYI r'GATC_y Cuts at: 1972 2809 3082 3449 3834 3851 5303 5389 5401 Size: 837 273 367 385 17 1452 86 12 Cuts at: 5401 5747 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 837 385 367 346 273 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2946 2946 Size: 5752 BtgI C'CryG_G Cuts at: 513 1065 2004 2189 513 Size: 552 939 185 4076 Fragments arranged by size: 4076 939 552 185 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2832 487 Size: 683 56 1606 3407 Fragments arranged by size: 3407 1606 683 56 BtsI GCAGTG_nn' Cuts at: 3268 4062 4082 3268 Size: 794 20 4938 Fragments arranged by size: 4938 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5752 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5717 DraI TTT'AAA Cuts at: 3056 3056 Size: 5752 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4759 809 Size: 507 3443 1802 Fragments arranged by size: 3443 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2046 2305 3199 Size: 54 1425 50 275 18 216 259 894 Cuts at: 3199 4088 5717 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 894 889 275 259 216 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3199 1537 Size: 275 1387 4090 Fragments arranged by size: 4090 1387 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2793 2835 3682 1353 Size: 1440 42 847 3423 Fragments arranged by size: 3423 1440 847 42 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2351 4339 4713 4859 387 Size: 1064 138 762 1988 374 146 1280 Fragments arranged by size: 1988 1280 1064 762 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2240 2976 3815 4412 5199 5467 1239 Size: 393 608 736 839 597 787 268 1524 Fragments arranged by size: 1524 839 787 736 608 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2081 2903 2904 2081 Size: 822 1 4929 Fragments arranged by size: 4929 822 1 EcoRI G'AATT_C Cuts at: 2550 3061 3439 2550 Size: 511 378 4863 Fragments arranged by size: 4863 511 378 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2798 2828 2798 Size: 30 5722 FspI TGC'GCA Cuts at: 4258 4258 Size: 5752 HaeII r_GCGC'y Cuts at: 1678 2020 2042 4899 1678 Size: 342 22 2857 2531 Fragments arranged by size: 2857 2531 342 22 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2503 2535 4393 4425 4467 Size: 32 135 32 931 32 1858 32 42 Cuts at: 4467 4499 1373 Size: 32 2626 Fragments arranged by size: 2626 1858 931 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3096 3342 669 Size: 988 281 1158 246 3079 Fragments arranged by size: 3079 1158 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5752 HpaI GTT'AAC Cuts at: 3342 3342 Size: 5752 KpnI G_GTAC'C Cuts at: 3077 3077 Size: 5752 MfeI C'AATT_G Cuts at: 3351 3351 Size: 5752 MluI A'CGCG_T Cuts at: 5628 5628 Size: 5752 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2163 4866 5050 1305 Size: 858 2703 184 2007 Fragments arranged by size: 2703 2007 858 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3930 Fragments arranged by size: 3930 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2996 3710 4069 4228 518 Size: 648 1830 714 359 159 2042 Fragments arranged by size: 2042 1830 714 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2987 3168 3845 4993 5238 1606 Size: 1381 181 677 1148 245 2120 Fragments arranged by size: 2120 1381 1148 677 245 181 NcoI C'CATG_G Cuts at: 513 1065 2004 2189 513 Size: 552 939 185 4076 Fragments arranged by size: 4076 939 552 185 NdeI CA'TA_TG Cuts at: 387 387 Size: 5752 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5752 NotI GC'GGCC_GC Cuts at: 3199 3199 Size: 5752 NspI r_CATG'y Cuts at: 1132 1229 3038 3110 4655 1132 Size: 97 1809 72 1545 2229 Fragments arranged by size: 2229 1809 1545 97 72 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5752 PciI A'CATG_T Cuts at: 4651 4651 Size: 5752 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5752 PmeI GTTT'AAAC Cuts at: 3056 3056 Size: 5752 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3821 3853 5334 5366 3821 Size: 32 1481 32 4207 Fragments arranged by size: 4207 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5752 PsiI TTA'TAA Cuts at: 3322 3322 Size: 5752 PspOMI G'GGCC_C Cuts at: 2903 2903 Size: 5752 PstI C_TGCA'G Cuts at: 830 2400 3104 830 Size: 1570 704 3478 Fragments arranged by size: 3478 1570 704 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5752 PvuII CAG'CTG Cuts at: 2987 2987 Size: 5752 SalI G'TCGA_C Cuts at: 1936 3094 1936 Size: 1158 4594 SbfI CC_TGCA'GG Cuts at: 3104 3104 Size: 5752 ScaI AGT'ACT Cuts at: 4000 5712 4000 Size: 1712 4040 SexAI A'CCwGG_T Cuts at: 2293 2293 Size: 5752 SfcI C'TryA_G Cuts at: 826 1045 2396 3100 4235 4916 5107 826 Size: 219 1351 704 1135 681 191 1471 Fragments arranged by size: 1471 1351 1135 704 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5752 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5752 SmaI CCC'GGG Cuts at: 1872 2930 3079 1872 Size: 1058 149 4545 Fragments arranged by size: 4545 1058 149 SmlI C'TyrA_G Cuts at: 820 1017 1943 3013 3856 4757 5019 820 Size: 197 926 1070 843 901 262 1553 Fragments arranged by size: 1553 1070 926 901 843 262 197 SnaBI TAC'GTA Cuts at: 493 3543 493 Size: 3050 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5752 SphI G_CATG'C Cuts at: 1132 3038 3110 1132 Size: 1906 72 3774 Fragments arranged by size: 3774 1906 72 SspI AAT'ATT Cuts at: 5 52 3676 5 Size: 47 3624 2081 Fragments arranged by size: 3624 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5752 StyI C'CwwG_G Cuts at: 513 1065 2004 2189 2592 2660 3191 513 Size: 552 939 185 403 68 531 3074 Fragments arranged by size: 3074 939 552 531 403 185 68 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3779 3796 3949 4134 4579 325 Size: 1255 2199 17 153 185 445 1498 Fragments arranged by size: 2199 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3998 5710 96 Size: 274 80 33 51 1443 2021 1712 138 Fragments arranged by size: 2021 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2150 2182 5712 5744 2150 Size: 32 3530 32 2158 Fragments arranged by size: 3530 2158 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5752 XbaI T'CTAG_A Cuts at: 3088 3088 Size: 5752 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2146 2146 Size: 5752 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5752 XmaI C'CCGG_G Cuts at: 1870 2928 3077 1870 Size: 1058 149 4545 Fragments arranged by size: 4545 1058 149 XmnI GAAnn'nnTTC Cuts at: 2253 3881 2253 Size: 1628 4124 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3560 276 Size: 53 83 186 936 2026 2468 Fragments arranged by size: 2468 2026 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI