Result of FASTA (omim) for
pFN21AA0840
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0840, 491 aa
1>>>pF1KA0840 491 - 491 aa - 491 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1246+/-0.000376; mu= 9.9538+/- 0.024
mean_var=128.1072+/-26.033, 0's: 0 Z-trim(116.2): 127 B-trim: 0 in 0/54
Lambda= 0.113315
statistics sampled from 27104 (27250) to 27104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.32), width: 16
Scan time: 7.470
The best scores are: opt bits E(85289)
NP_036436 (OMIM: 605656) F-box/LRR-repeat protein ( 491) 3321 554.4 2.6e-157
XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 486) 3239 541.0 2.8e-153
NP_001265246 (OMIM: 605656) F-box/LRR-repeat prote ( 444) 3028 506.5 6.3e-143
XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 444) 3028 506.5 6.3e-143
NP_036289 (OMIM: 605652) F-box/LRR-repeat protein ( 423) 527 97.6 7.2e-20
NP_116264 (OMIM: 609086) F-box/LRR-repeat protein ( 436) 520 96.5 1.6e-19
XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 473) 520 96.5 1.8e-19
XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 454) 469 88.2 5.5e-17
XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 434 82.3 2.2e-15
XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 434 82.3 2.2e-15
NP_001171835 (OMIM: 609086) F-box/LRR-repeat prote ( 404) 421 80.3 1.1e-14
XP_005257804 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 441) 421 80.3 1.2e-14
XP_016861582 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 376 72.9 1.7e-12
XP_011531861 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 376 72.9 1.7e-12
XP_005265072 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 376 72.9 1.7e-12
XP_016861581 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 376 72.9 1.7e-12
XP_005265073 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 376 72.9 1.7e-12
XP_011514234 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 639) 348 68.5 6.5e-11
NP_001104508 (OMIM: 609080) F-box/LRR-repeat prote ( 690) 348 68.5 6.9e-11
XP_005250265 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 348 68.5 7.6e-11
NP_001165184 (OMIM: 605652) F-box/LRR-repeat prote ( 355) 330 65.4 3.1e-10
XP_006715961 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 584) 332 65.8 3.7e-10
XP_016867342 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 332 65.9 4.5e-10
XP_005250266 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 332 65.9 4.5e-10
NP_659469 (OMIM: 609080) F-box/LRR-repeat protein ( 735) 332 65.9 4.5e-10
XP_011514232 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 332 65.9 4.5e-10
XP_016867341 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 332 65.9 4.7e-10
XP_005250264 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 792) 332 65.9 4.7e-10
XP_016867339 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 822) 332 65.9 4.9e-10
XP_005250262 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 825) 332 65.9 4.9e-10
NP_001274079 (OMIM: 609080) F-box/LRR-repeat prote ( 707) 328 65.2 6.8e-10
XP_011514230 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 797) 328 65.3 7.5e-10
XP_016867340 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 809) 328 65.3 7.6e-10
XP_011514231 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 783) 323 64.4 1.3e-09
XP_016866217 (OMIM: 605654,615471) PREDICTED: F-bo ( 379) 315 62.9 1.8e-09
XP_016866215 (OMIM: 605654,615471) PREDICTED: F-bo ( 621) 315 63.1 2.7e-09
NP_036292 (OMIM: 605654,615471) F-box/LRR-repeat p ( 621) 315 63.1 2.7e-09
NP_001265645 (OMIM: 605654,615471) F-box/LRR-repea ( 621) 315 63.1 2.7e-09
XP_016865218 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 567) 304 61.3 8.7e-09
XP_011541880 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 582) 304 61.3 8.8e-09
XP_011541879 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 589) 304 61.3 8.9e-09
XP_011541878 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 610) 304 61.3 9.2e-09
XP_011541877 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 618) 304 61.3 9.3e-09
XP_011541876 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 621) 304 61.3 9.3e-09
NP_001156787 (OMIM: 609083) F-box/LRR-repeat prote ( 701) 304 61.3 1e-08
XP_005272105 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 712) 304 61.3 1e-08
NP_078831 (OMIM: 609076) F-box/LRR-repeat protein ( 533) 293 59.4 2.9e-08
XP_005270207 (OMIM: 610287) PREDICTED: F-box/LRR-r ( 300) 287 58.3 3.6e-08
XP_005270208 (OMIM: 610287) PREDICTED: F-box/LRR-r ( 300) 287 58.3 3.6e-08
NP_077302 (OMIM: 610287) F-box/LRR-repeat protein ( 300) 287 58.3 3.6e-08
>>NP_036436 (OMIM: 605656) F-box/LRR-repeat protein 7 is (491 aa)
initn: 3321 init1: 3321 opt: 3321 Z-score: 2945.2 bits: 554.4 E(85289): 2.6e-157
Smith-Waterman score: 3321; 100.0% identity (100.0% similar) in 491 aa overlap (1-491:1-491)
10 20 30 40 50 60
pF1KA0 MGANNGKQYGSEGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MGANNGKQYGSEGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 PPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 TPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 EHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 THLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 THLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 GRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 ECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKR
430 440 450 460 470 480
490
pF1KA0 CVIEHTNPAFF
:::::::::::
NP_036 CVIEHTNPAFF
490
>>XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-repea (486 aa)
initn: 3239 init1: 3239 opt: 3239 Z-score: 2872.9 bits: 541.0 E(85289): 2.8e-153
Smith-Waterman score: 3239; 100.0% identity (100.0% similar) in 479 aa overlap (13-491:8-486)
10 20 30 40 50 60
pF1KA0 MGANNGKQYGSEGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALIC
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVYLSCPGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALIC
10 20 30 40 50
70 80 90 100 110 120
pF1KA0 PPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KA0 SMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KA0 TPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KA0 EHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KA0 THLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 THLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC
300 310 320 330 340 350
370 380 390 400 410 420
pF1KA0 GRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGL
360 370 380 390 400 410
430 440 450 460 470 480
pF1KA0 ECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKR
420 430 440 450 460 470
490
pF1KA0 CVIEHTNPAFF
:::::::::::
XP_016 CVIEHTNPAFF
480
>>NP_001265246 (OMIM: 605656) F-box/LRR-repeat protein 7 (444 aa)
initn: 3028 init1: 3028 opt: 3028 Z-score: 2687.0 bits: 506.5 E(85289): 6.3e-143
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 444 aa overlap (48-491:1-444)
20 30 40 50 60 70
pF1KA0 SISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALICPPNLPGFQNGRGSSTSS
::::::::::::::::::::::::::::::
NP_001 MRTLSTPSPALICPPNLPGFQNGRGSSTSS
10 20 30
80 90 100 110 120 130
pF1KA0 SSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRC
40 50 60 70 80 90
140 150 160 170 180 190
pF1KA0 ARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCR
100 110 120 130 140 150
200 210 220 230 240 250
pF1KA0 RLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT
160 170 180 190 200 210
260 270 280 290 300 310
pF1KA0 REASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLR
220 230 240 250 260 270
320 330 340 350 360 370
pF1KA0 YLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK
280 290 300 310 320 330
380 390 400 410 420 430
pF1KA0 LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKS
340 350 360 370 380 390
440 450 460 470 480 490
pF1KA0 CESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
400 410 420 430 440
>>XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-repea (444 aa)
initn: 3028 init1: 3028 opt: 3028 Z-score: 2687.0 bits: 506.5 E(85289): 6.3e-143
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 444 aa overlap (48-491:1-444)
20 30 40 50 60 70
pF1KA0 SISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALICPPNLPGFQNGRGSSTSS
::::::::::::::::::::::::::::::
XP_011 MRTLSTPSPALICPPNLPGFQNGRGSSTSS
10 20 30
80 90 100 110 120 130
pF1KA0 SSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRC
40 50 60 70 80 90
140 150 160 170 180 190
pF1KA0 ARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCR
100 110 120 130 140 150
200 210 220 230 240 250
pF1KA0 RLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT
160 170 180 190 200 210
260 270 280 290 300 310
pF1KA0 REASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLR
220 230 240 250 260 270
320 330 340 350 360 370
pF1KA0 YLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK
280 290 300 310 320 330
380 390 400 410 420 430
pF1KA0 LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKS
340 350 360 370 380 390
440 450 460 470 480 490
pF1KA0 CESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
400 410 420 430 440
>>NP_036289 (OMIM: 605652) F-box/LRR-repeat protein 2 is (423 aa)
initn: 1129 init1: 335 opt: 527 Z-score: 477.6 bits: 97.6 E(85289): 7.2e-20
Smith-Waterman score: 644; 30.1% identity (65.9% similar) in 369 aa overlap (116-479:14-366)
90 100 110 120 130 140
pF1KA0 AMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWY
.:: . ...::::: :::::.. . :
NP_036 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWN
10 20 30 40
150 160 170 180 190 200
pF1KA0 NLAWDPRLWRTIRLTGETINVD-RALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGL
:: : :. : : . .:. :... ...: : .:. ... :: . : .:
NP_036 ILALDGSNWQRIDLFNFQTDVEGRVVENISKR-CGG------FLRKLSLRGCIGVGDSSL
50 60 70 80 90
210 220 230 240 250 260
pF1KA0 YTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKL
:.:: : ....:...:: .:.. . ... .: .:.:::.. .:.:.: ..:.:
NP_036 KTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT-----SCVSIT-NSSLK-
100 110 120 130 140
270 280 290 300 310 320
pF1KA0 SPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCA
. .: . ...::... : . .:..... : : : :: :..: ::.:... ::
NP_036 GISEGCR-NLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCH
150 160 170 180 190 200
330 340 350 360 370 380
pF1KA0 SIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNAR
. :....: ..: :. .: . ::. : .. :. .::... .. : .:. :.:
NP_036 ELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAA
210 220 230 240 250 260
390 400 410 420 430 440
pF1KA0 GCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQ
: .:: : ::.:: .:...:. .: :..:. : :...: .:. :::. :: :: .
NP_036 RCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDD
270 280 290 300 310 320
450 460 470 480 490
pF1KA0 G-LQIVAANCFD--LQTLNVQDCEVSVE-ALRFVKRHCKRCVIEHTNPAFF
: :.. ..: :..:....: . .. ::. .. .:.
NP_036 GILHLSNSTCGHERLRVLELDNCLLITDVALEHLE-NCRGLERLELYDCQQVTRAGIKRM
330 340 350 360 370 380
NP_036 RAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
390 400 410 420
>>NP_116264 (OMIM: 609086) F-box/LRR-repeat protein 20 i (436 aa)
initn: 807 init1: 330 opt: 520 Z-score: 471.3 bits: 96.5 E(85289): 1.6e-19
Smith-Waterman score: 628; 29.6% identity (63.1% similar) in 385 aa overlap (102-481:12-378)
80 90 100 110 120 130
pF1KA0 GSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDR-LPDHSMVQIFSFLP
:. ....: :.. :: . ...:::::
NP_116 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLD
10 20 30 40
140 150 160 170 180
pF1KA0 TNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVD-RALKVLTRRLCQDTPNVCLMLE
. :::::.: : : :: : :. : : ... :... ...: : .:.
NP_116 VVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKR-CGG------FLR
50 60 70 80 90
190 200 210 220 230 240
pF1KA0 TVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCS
... :: . : .: :.:: : ... :...:: . .. . .. ..: .:.:::...:.
NP_116 KLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCT
100 110 120 130 140 150
250 260 270 280 290 300
pF1KA0 KVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCV
..: .:: .: . :: .:..: . :. : .: :..... : : :.:. :.
NP_116 SITNMSL--KALSEGCPLL-EQLNISWCDQ----VTKD-GIQALVRGCGGLKALFLKGCT
160 170 180 190 200
310 320 330 340 350 360
pF1KA0 RLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIR
.: ::.:.:. .: . :... : ..: :: : . .:. : . :. .::. .
NP_116 QLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILN
210 220 230 240 250 260
370 380 390 400 410 420
pF1KA0 YVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFN
... : .:: :.. : .:: : ::.:: .:...:. .: ..:. : :...:
NP_116 ALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPR
270 280 290 300 310 320
430 440 450 460 470 480
pF1KA0 LKRLSLKSCESITGQGLQIVAAN-CF--DLQTLNVQDCEVSVEALRFVKRHCKRCVIEHT
:. :::. :: :: .:.. .. . : .:.......: . ..: .: : :
NP_116 LQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDA---SLEHLKSCHSLER
330 340 350 360 370 380
490
pF1KA0 NPAFF
NP_116 IELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
390 400 410 420 430
>>XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-repea (473 aa)
initn: 807 init1: 330 opt: 520 Z-score: 470.8 bits: 96.5 E(85289): 1.8e-19
Smith-Waterman score: 641; 28.7% identity (62.2% similar) in 397 aa overlap (90-481:37-415)
60 70 80 90 100 110
pF1KA0 CPPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDR-LP
.: :: : .. . ....: :.. ::
XP_005 GGGGGGGGNRGGAAAAALPQSRHIQKRRKMAPSRDRLLHFGFKATMFSNSDEAVINKKLP
10 20 30 40 50 60
120 130 140 150 160 170
pF1KA0 DHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVD-RALKVLTRRL
. ...::::: . :::::.: : : :: : :. : : ... :... ...:
XP_005 KELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKR-
70 80 90 100 110 120
180 190 200 210 220 230
pF1KA0 CQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLC
: .:. ... :: . : .: :.:: : ... :...:: . .. . .. ..:
XP_005 CGG------FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFC
130 140 150 160 170
240 250 260 270 280 290
pF1KA0 PNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHC
.:.:::...:...: .:: .: . :: .. :... : . .:..... :
XP_005 SKLRHLDLASCTSITNMSL--KALSEGCPL------LEQLNISWCDQVTKDGIQALVRGC
180 190 200 210 220 230
300 310 320 330 340 350
pF1KA0 TQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSI
: :.:. :..: ::.:.:. .: . :... : ..: :: : . .:. :
XP_005 GGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA
240 250 260 270 280 290
360 370 380 390 400 410
pF1KA0 AHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSD
. :. .::. . ... : .:: :.. : .:: : ::.:: .:...:. .: ..:
XP_005 SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITD
300 310 320 330 340 350
420 430 440 450 460 470
pF1KA0 TGLECLALNCFNLKRLSLKSCESITGQGLQIVAAN-CF--DLQTLNVQDCEVSVEALRFV
. : :...: :. :::. :: :: .:.. .. . : .:.......: . ..:
XP_005 STLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDA---S
360 370 380 390 400
480 490
pF1KA0 KRHCKRCVIEHTNPAFF
.: : :
XP_005 LEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCR
410 420 430 440 450 460
>>XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-repea (454 aa)
initn: 1108 init1: 270 opt: 469 Z-score: 426.0 bits: 88.2 E(85289): 5.5e-17
Smith-Waterman score: 586; 30.1% identity (65.2% similar) in 319 aa overlap (116-433:14-317)
90 100 110 120 130 140
pF1KA0 AMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWY
.:: . ...::::: :::::.. . :
XP_005 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWN
10 20 30 40
150 160 170 180 190 200
pF1KA0 NLAWDPRLWRTIRLTGETINVD-RALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGL
:: : :. : : . .:. :... ...: : .:. ... :: . : .:
XP_005 ILALDGSNWQRIDLFNFQTDVEGRVVENISKR-CGG------FLRKLSLRGCIGVGDSSL
50 60 70 80 90
210 220 230 240 250 260
pF1KA0 YTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKL
:.:: : ....:...:: .:.. . ... .: .:.:::.. .:.:.: ..:.:
XP_005 KTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT-----SCVSIT-NSSLK-
100 110 120 130 140
270 280 290 300 310 320
pF1KA0 SPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCA
. .: . ...::... : . .:..... : : : :: :..: ::.:... ::
XP_005 GISEGCR-NLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCH
150 160 170 180 190 200
330 340 350 360 370 380
pF1KA0 SIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNAR
. :....: ..: :. .: . ::. : .. :. .::... .. : .:. :.:
XP_005 ELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAA
210 220 230 240 250 260
390 400 410 420 430 440
pF1KA0 GCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQ
: .:: : ::.:: .:...:. .: :..:. : :...: .:. :
XP_005 RCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALVSLSFSDIIHL
270 280 290 300 310 320
450 460 470 480 490
pF1KA0 GLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
XP_005 LKMKEPSHHNKKLFGFSFCKSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDV
330 340 350 360 370 380
>>XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-repea (318 aa)
initn: 590 init1: 335 opt: 434 Z-score: 397.3 bits: 82.3 E(85289): 2.2e-15
Smith-Waterman score: 457; 30.2% identity (62.2% similar) in 291 aa overlap (205-491:18-295)
180 190 200 210 220 230
pF1KA0 RRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVV
:.... : .:..:....: .:.: .. .
XP_016 MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGIS
10 20 30 40
240 250 260 270 280 290
pF1KA0 SLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIA
: :::.:..: :...: .. :: .. : . ... : . : ::::.:. :
XP_016 EGCRNLEYLNLSWCDQITKDGI--EALVR-----GCR-GLKALLLRGCTQLEDEALKHIQ
50 60 70 80 90
300 310 320 330 340 350
pF1KA0 AHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRY
.: .:. : :. : :.::::. . : .. : .: : ..: .: .. ::.
XP_016 NYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQI
100 110 120 130 140 150
360 370 380 390 400 410
pF1KA0 LSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPL
: :.:...::.:. .:. : .:. .. . : ::: . :. .: ::..:....: :
XP_016 LEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCEL
160 170 180 190 200 210
420 430 440 450 460 470
pF1KA0 VSDTGLECLALN-CFN--LKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEAL
..: :. :. . : . :. : : .: :: .:. . :: :. :.. ::. ..:
XP_016 ITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLE-NCRGLERLELYDCQQVTRAG
220 230 240 250 260 270
480 490
pF1KA0 RFVKRHCKRCVIEHTN-PAFF
.:: : . :.. :.:
XP_016 --IKRM--RAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
280 290 300 310
>>XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-repea (318 aa)
initn: 590 init1: 335 opt: 434 Z-score: 397.3 bits: 82.3 E(85289): 2.2e-15
Smith-Waterman score: 457; 30.2% identity (62.2% similar) in 291 aa overlap (205-491:18-295)
180 190 200 210 220 230
pF1KA0 RRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVV
:.... : .:..:....: .:.: .. .
XP_005 MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGIS
10 20 30 40
240 250 260 270 280 290
pF1KA0 SLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIA
: :::.:..: :...: .. :: .. : . ... : . : ::::.:. :
XP_005 EGCRNLEYLNLSWCDQITKDGI--EALVR-----GCR-GLKALLLRGCTQLEDEALKHIQ
50 60 70 80 90
300 310 320 330 340 350
pF1KA0 AHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRY
.: .:. : :. : :.::::. . : .. : .: : ..: .: .. ::.
XP_005 NYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQI
100 110 120 130 140 150
360 370 380 390 400 410
pF1KA0 LSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPL
: :.:...::.:. .:. : .:. .. . : ::: . :. .: ::..:....: :
XP_005 LEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCEL
160 170 180 190 200 210
420 430 440 450 460 470
pF1KA0 VSDTGLECLALN-CFN--LKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEAL
..: :. :. . : . :. : : .: :: .:. . :: :. :.. ::. ..:
XP_005 ITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLE-NCRGLERLELYDCQQVTRAG
220 230 240 250 260 270
480 490
pF1KA0 RFVKRHCKRCVIEHTN-PAFF
.:: : . :.. :.:
XP_005 --IKRM--RAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
280 290 300 310
491 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:04:03 2016 done: Fri Nov 4 01:04:04 2016
Total Scan time: 7.470 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]