Result of FASTA (ccds) for
pFN21AA0013
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0013, 1023 aa
1>>>pF1KA0013 1023 - 1023 aa - 1023 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5757+/-0.00123; mu= 10.5211+/- 0.073
mean_var=120.8982+/-24.090, 0's: 0 Z-trim(104.1): 118 B-trim: 0 in 0/50
Lambda= 0.116644
statistics sampled from 7589 (7709) to 7589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.237), width: 16
Scan time: 4.120
The best scores are: opt bits E(32554)
CCDS10028.1 ARHGAP11A gene_id:9824|Hs108|chr15 (1023) 6690 1138.1 0
CCDS66730.1 ARHGAP11A gene_id:9824|Hs108|chr15 ( 834) 5422 924.7 0
CCDS58349.1 ARHGAP11A gene_id:9824|Hs108|chr15 ( 501) 3258 560.4 3.2e-159
CCDS32185.1 ARHGAP11B gene_id:89839|Hs108|chr15 ( 267) 1440 254.4 2.3e-67
>>CCDS10028.1 ARHGAP11A gene_id:9824|Hs108|chr15 (1023 aa)
initn: 6690 init1: 6690 opt: 6690 Z-score: 6088.3 bits: 1138.1 E(32554): 0
Smith-Waterman score: 6690; 100.0% identity (100.0% similar) in 1023 aa overlap (1-1023:1-1023)
10 20 30 40 50 60
pF1KA0 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 RTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 NSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 LLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRMSWTGPNNSSFQEVDANEASSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRMSWTGPNNSSFQEVDANEASSM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 VENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNITSSPLSGDENNMTKETLVKVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNITSSPLSGDENNMTKETLVKVQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 KAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSPEENLFETNDLTIVESKEKYEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSPEENLFETNDLTIVESKEKYEH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 HTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEHEKDIHSNMPKDYLSKQEFSSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEHEKDIHSNMPKDYLSKQEFSSD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 EEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEARSSFSQQSTCVVTNLSKPRPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEARSSFSQQSTCVVTNLSKPRPM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 RIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSLNEPNRIKVKSPLKFQRTPVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSLNEPNRIKVKSPLKFQRTPVRQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 SVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGALSSCIESASKDSSVSCIKSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGALSSCIESASKDSSVSCIKSGP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 KEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVNASLRSTTVYKQKILSDGQVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVNASLRSTTVYKQKILSDGQVKV
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 PLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRAWYKGSPKHPIGKTQLLPTSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRAWYKGSPKHPIGKTQLLPTSKP
970 980 990 1000 1010 1020
pF1KA0 VDL
:::
CCDS10 VDL
>>CCDS66730.1 ARHGAP11A gene_id:9824|Hs108|chr15 (834 aa)
initn: 5422 init1: 5422 opt: 5422 Z-score: 4936.5 bits: 924.7 E(32554): 0
Smith-Waterman score: 5422; 100.0% identity (100.0% similar) in 834 aa overlap (190-1023:1-834)
160 170 180 190 200 210
pF1KA0 SCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEK
::::::::::::::::::::::::::::::
CCDS66 MDSSNLAVIFAPNLLQTSEGHEKMSSNTEK
10 20 30
220 230 240 250 260 270
pF1KA0 KLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYK
40 50 60 70 80 90
280 290 300 310 320 330
pF1KA0 RKRRQSVGDFVSGALNKFKPNRTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RKRRQSVGDFVSGALNKFKPNRTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFS
100 110 120 130 140 150
340 350 360 370 380 390
pF1KA0 SKKRKSIKHNFNFELLPSNLFNSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SKKRKSIKHNFNFELLPSNLFNSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVP
160 170 180 190 200 210
400 410 420 430 440 450
pF1KA0 RRSKRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RRSKRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYES
220 230 240 250 260 270
460 470 480 490 500 510
pF1KA0 VGWRLANQQSLKNRIESVKTGLLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VGWRLANQQSLKNRIESVKTGLLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRM
280 290 300 310 320 330
520 530 540 550 560 570
pF1KA0 SWTGPNNSSFQEVDANEASSMVENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SWTGPNNSSFQEVDANEASSMVENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNI
340 350 360 370 380 390
580 590 600 610 620 630
pF1KA0 TSSPLSGDENNMTKETLVKVQKAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TSSPLSGDENNMTKETLVKVQKAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSP
400 410 420 430 440 450
640 650 660 670 680 690
pF1KA0 EENLFETNDLTIVESKEKYEHHTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EENLFETNDLTIVESKEKYEHHTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEH
460 470 480 490 500 510
700 710 720 730 740 750
pF1KA0 EKDIHSNMPKDYLSKQEFSSDEEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EKDIHSNMPKDYLSKQEFSSDEEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEA
520 530 540 550 560 570
760 770 780 790 800 810
pF1KA0 RSSFSQQSTCVVTNLSKPRPMRIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RSSFSQQSTCVVTNLSKPRPMRIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSL
580 590 600 610 620 630
820 830 840 850 860 870
pF1KA0 NEPNRIKVKSPLKFQRTPVRQSVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NEPNRIKVKSPLKFQRTPVRQSVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGA
640 650 660 670 680 690
880 890 900 910 920 930
pF1KA0 LSSCIESASKDSSVSCIKSGPKEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LSSCIESASKDSSVSCIKSGPKEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVN
700 710 720 730 740 750
940 950 960 970 980 990
pF1KA0 ASLRSTTVYKQKILSDGQVKVPLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ASLRSTTVYKQKILSDGQVKVPLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRA
760 770 780 790 800 810
1000 1010 1020
pF1KA0 WYKGSPKHPIGKTQLLPTSKPVDL
::::::::::::::::::::::::
CCDS66 WYKGSPKHPIGKTQLLPTSKPVDL
820 830
>>CCDS58349.1 ARHGAP11A gene_id:9824|Hs108|chr15 (501 aa)
initn: 3258 init1: 3258 opt: 3258 Z-score: 2971.9 bits: 560.4 E(32554): 3.2e-159
Smith-Waterman score: 3258; 99.8% identity (100.0% similar) in 496 aa overlap (1-496:1-496)
10 20 30 40 50 60
pF1KA0 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 RTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 NSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 LLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRMSWTGPNNSSFQEVDANEASSM
:::::::::::::::.
CCDS58 LLFSPDVDEKLPKKGTFTYYC
490 500
>>CCDS32185.1 ARHGAP11B gene_id:89839|Hs108|chr15 (267 aa)
initn: 1439 init1: 1439 opt: 1440 Z-score: 1322.8 bits: 254.4 E(32554): 2.3e-67
Smith-Waterman score: 1440; 95.2% identity (97.0% similar) in 231 aa overlap (1-231:1-226)
10 20 30 40 50 60
pF1KA0 MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MWDQRLVKLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS32 EYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRN
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS32 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKAILLLSCLLADHTVHVLRYFFNFLRN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR
::::::::::::::::::::::::::::::::::::.::: .: :::
CCDS32 VSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNAEKK-----GVYQTLSWKRYQPCW
190 200 210 220 230
250 260 270 280 290 300
pF1KA0 VPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPN
CCDS32 VLMVSVLLHHWKALKKVNMKLLVNIREREDNV
240 250 260
1023 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:21:07 2016 done: Fri Nov 4 00:21:08 2016
Total Scan time: 4.120 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]