(Circular) (Six-base) MAPSORT of: pFN21AB7506.seq Check: 2079 from: 1 to: 5425 pFN21AB7506 5425 bp With 182 enzymes: SgfI * October 20, 2009 11:00 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3235 278 Size: 53 83 186 936 1699 2468 Fragments arranged by size: 2468 1699 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2768 1937 Size: 831 4594 Acc65I G'GTAC_C Cuts at: 2746 2746 Size: 5425 AclI AA'CG_TT Cuts at: 1563 3552 3925 1563 Size: 1989 373 3063 Fragments arranged by size: 3063 1989 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2552 3488 4872 5140 1632 Size: 920 936 1384 268 1917 Fragments arranged by size: 1917 1384 936 920 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5228 AflIII A'CryG_T Cuts at: 1203 4324 5301 1203 Size: 3121 977 1327 Fragments arranged by size: 3121 1327 977 AgeI A'CCGG_T Cuts at: 4256 4256 Size: 5425 AhdI GACnn_n'nnGTC Cuts at: 4154 4154 Size: 5425 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5425 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5425 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2495 2527 2495 Size: 32 5393 AlwNI CAG_nnn'CTG Cuts at: 2428 3168 4740 2428 Size: 740 1572 3113 Fragments arranged by size: 3113 1572 740 ApaI G_GGCC'C Cuts at: 2449 2449 Size: 5425 ApaLI G'TGCA_C Cuts at: 3482 4638 3482 Size: 1156 4269 ApoI r'AATT_y Cuts at: 1493 2539 2734 2960 3112 5221 1493 Size: 1046 195 226 152 2109 1697 Fragments arranged by size: 2109 1697 1046 226 195 152 AseI AT'TA_AT Cuts at: 160 1032 3979 160 Size: 872 2947 1606 Fragments arranged by size: 2947 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5425 AvaI C'yCGr_G Cuts at: 1870 1943 2279 2438 2750 1870 Size: 73 336 159 312 4545 Fragments arranged by size: 4545 336 312 159 73 BamHI G'GATC_C Cuts at: 2755 3122 2755 Size: 367 5058 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2328 2746 4201 618 Size: 325 217 627 541 418 1455 1842 Fragments arranged by size: 1842 1455 627 541 418 325 217 BanII G_rGCy'C Cuts at: 1391 2449 2744 1391 Size: 1058 295 4072 Fragments arranged by size: 4072 1058 295 BbeI G_GCGC'C Cuts at: 2332 2332 Size: 5425 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2047 928 Size: 971 148 4306 Fragments arranged by size: 4306 971 148 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3616 3650 1903 Size: 34 1679 34 3678 Fragments arranged by size: 3678 1679 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3317 4527 3317 Size: 1210 4215 BclI T'GATC_A Cuts at: 1548 1548 Size: 5425 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2453 4036 136 Size: 107 122 71 631 605 781 1583 1525 Fragments arranged by size: 1583 1525 781 631 605 122 107 71 BglII A'GATC_T Cuts at: 2490 5420 2490 Size: 2930 2495 BlpI GC'TnA_GC Cuts at: 2842 2842 Size: 5425 Bme1580I G_kGCm'C Cuts at: 1790 2449 3486 4642 1790 Size: 659 1037 1156 2573 Fragments arranged by size: 2573 1156 1037 659 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5425 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3156 4114 442 Size: 416 53 83 399 24 1739 958 1753 Fragments arranged by size: 1753 1739 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5425 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2305 2305 Size: 5425 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2131 2362 4085 1239 Size: 892 231 1723 2579 Fragments arranged by size: 2579 1723 892 231 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3550 4415 4713 3550 Size: 865 298 4262 Fragments arranged by size: 4262 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4088 882 Size: 617 2589 2219 Fragments arranged by size: 2589 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3216 493 Size: 711 2012 2702 Fragments arranged by size: 2702 2012 711 BsaBI GATnn'nnATC Cuts at: 5419 5419 Size: 5425 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2040 2329 3232 3614 Size: 53 83 186 936 507 289 903 382 Cuts at: 3614 4249 275 Size: 635 1451 Fragments arranged by size: 1451 936 903 635 507 382 289 186 83 53 BsaWI w'CCGG_w Cuts at: 3858 4256 4530 4677 5088 3858 Size: 398 274 147 411 4195 Fragments arranged by size: 4195 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2495 2525 1178 Size: 30 165 30 1092 30 4078 Fragments arranged by size: 4078 1092 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2683 1186 Size: 1497 3928 BseYI C'CCAG_C Cuts at: 2448 4628 5124 2448 Size: 2180 496 2749 Fragments arranged by size: 2749 2180 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4852 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2035 2875 3636 4664 1540 Size: 275 186 34 840 761 1028 2301 Fragments arranged by size: 2301 1028 840 761 275 186 34 BsiHKAI G_wGCw'C Cuts at: 2268 3486 3571 4642 2268 Size: 1218 85 1071 3051 Fragments arranged by size: 3051 1218 1071 85 BsmI GAATG_Cn' Cuts at: 2936 3029 2936 Size: 93 5332 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2268 2449 2744 3486 3571 4642 1391 Size: 399 478 181 295 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 478 399 295 181 85 BspEI T'CCGG_A Cuts at: 5088 5088 Size: 5425 BspHI T'CATG_A Cuts at: 3314 5044 3314 Size: 1730 3695 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2266 2780 844 Size: 1422 514 3489 Fragments arranged by size: 3489 1422 514 BsrBI CCG'CTC Cuts at: 1394 1823 2326 3312 1394 Size: 429 503 986 3507 Fragments arranged by size: 3507 986 503 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3920 4094 65 Size: 1183 2672 174 1396 Fragments arranged by size: 2672 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4069 4256 1700 Size: 110 2259 187 2869 Fragments arranged by size: 2869 2259 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5425 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5425 BssSI C'ACGA_G Cuts at: 3485 4497 3485 Size: 1012 4413 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5425 BstBI TT'CG_AA Cuts at: 4229 4229 Size: 5425 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5425 BstYI r'GATC_y Cuts at: 1972 2490 2620 2755 3122 3507 3524 4976 5062 Size: 518 130 135 367 385 17 1452 86 Cuts at: 5062 5074 5420 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 518 385 367 346 135 130 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2271 2334 2271 Size: 63 5362 BtgI C'CryG_G Cuts at: 513 1065 2229 2300 513 Size: 552 1164 71 3638 Fragments arranged by size: 3638 1164 552 71 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4686 Fragments arranged by size: 4686 683 56 BtsI GCAGTG_nn' Cuts at: 2941 3735 3755 2941 Size: 794 20 4611 Fragments arranged by size: 4611 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5425 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5390 DraI TTT'AAA Cuts at: 2729 2729 Size: 5425 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4432 809 Size: 507 3116 1802 Fragments arranged by size: 3116 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2032 2158 2872 Size: 54 1425 50 275 18 202 126 714 Cuts at: 2872 3761 5390 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 714 275 202 126 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2032 2872 1537 Size: 275 220 840 4090 Fragments arranged by size: 4090 840 275 220 EarI CTCTTCn'nnn_ Cuts at: 1353 3355 1353 Size: 2002 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4012 4386 4532 387 Size: 1064 138 2423 374 146 1280 Fragments arranged by size: 2423 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2131 2362 2552 3488 4085 4872 5140 Size: 393 499 231 190 936 597 787 268 Cuts at: 5140 1239 Size: 1524 Fragments arranged by size: 1524 936 787 597 499 393 268 231 190 EcoNI CCTnn'n_nnAGG Cuts at: 2146 2146 Size: 5425 EcoO109I rG'GnC_Cy Cuts at: 2338 2445 2574 2637 2338 Size: 107 129 63 5126 Fragments arranged by size: 5126 129 107 63 EcoRI G'AATT_C Cuts at: 2539 2734 3112 2539 Size: 195 378 4852 Fragments arranged by size: 4852 378 195 FspI TGC'GCA Cuts at: 3931 3931 Size: 5425 HaeII r_GCGC'y Cuts at: 1678 2237 2332 2435 4572 1678 Size: 559 95 103 2137 2531 Fragments arranged by size: 2531 2137 559 103 95 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4066 4098 4140 4172 1373 Size: 32 135 32 2494 32 42 32 2626 Fragments arranged by size: 2626 2494 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2769 3015 669 Size: 988 281 831 246 3079 Fragments arranged by size: 3079 988 831 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5425 HpaI GTT'AAC Cuts at: 3015 3015 Size: 5425 KasI G'GCGC_C Cuts at: 2328 2328 Size: 5425 KpnI G_GTAC'C Cuts at: 2750 2750 Size: 5425 MfeI C'AATT_G Cuts at: 3024 3024 Size: 5425 MluI A'CGCG_T Cuts at: 5301 5301 Size: 5425 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4539 4723 1305 Size: 3234 184 2007 Fragments arranged by size: 3234 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2160 10 Size: 54 1425 343 328 3275 Fragments arranged by size: 3275 1425 343 328 54 MslI CAynn'nnrTG Cuts at: 518 1166 3383 3742 3901 518 Size: 648 2217 359 159 2042 Fragments arranged by size: 2217 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2231 2302 2389 2452 2841 3518 4666 4911 Size: 625 71 87 63 389 677 1148 245 Cuts at: 4911 1606 Size: 2120 Fragments arranged by size: 2120 1148 677 625 389 245 87 71 63 NarI GG'CG_CC Cuts at: 2329 2329 Size: 5425 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4873 NdeI CA'TA_TG Cuts at: 387 387 Size: 5425 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5425 NotI GC'GGCC_GC Cuts at: 2872 2872 Size: 5425 NspI r_CATG'y Cuts at: 1132 1229 2783 4328 1132 Size: 97 1554 1545 2229 Fragments arranged by size: 2229 1554 1545 97 PasI CC'CwG_GG Cuts at: 1348 2567 1348 Size: 1219 4206 PciI A'CATG_T Cuts at: 4324 4324 Size: 5425 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5425 PmeI GTTT'AAAC Cuts at: 2729 2729 Size: 5425 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2495 2527 3494 3526 5007 5039 2495 Size: 32 967 32 1481 32 2881 Fragments arranged by size: 2881 1481 967 32 32 32 PpuMI rG'GwC_Cy Cuts at: 2574 2637 2574 Size: 63 5362 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5425 PsiI TTA'TAA Cuts at: 2995 2995 Size: 5425 PspOMI G'GGCC_C Cuts at: 2445 2445 Size: 5425 PspXI vC'TCGA_Gb Cuts at: 2279 2279 Size: 5425 PstI C_TGCA'G Cuts at: 830 2263 2388 2394 2777 830 Size: 1433 125 6 383 3478 Fragments arranged by size: 3478 1433 383 125 6 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5425 PvuII CAG'CTG Cuts at: 2389 2452 2389 Size: 63 5362 SacII CC_GC'GG Cuts at: 2232 2303 2232 Size: 71 5354 SalI G'TCGA_C Cuts at: 1936 2767 1936 Size: 831 4594 SanDI GG'GwC_CC Cuts at: 2637 2637 Size: 5425 SbfI CC_TGCA'GG Cuts at: 2777 2777 Size: 5425 ScaI AGT'ACT Cuts at: 3673 5385 3673 Size: 1712 3713 SfcI C'TryA_G Cuts at: 826 1045 2259 2384 2390 2773 3908 4589 4780 Size: 219 1214 125 6 383 1135 681 191 Cuts at: 4780 826 Size: 1471 Fragments arranged by size: 1471 1214 1135 681 383 219 191 125 6 SfoI GGC'GCC Cuts at: 2330 2330 Size: 5425 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5425 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5425 SmaI CCC'GGG Cuts at: 1872 2752 1872 Size: 880 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2279 3529 4430 4692 820 Size: 197 926 336 1250 901 262 1553 Fragments arranged by size: 1553 1250 926 901 336 262 197 SnaBI TAC'GTA Cuts at: 493 3216 493 Size: 2723 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5425 SphI G_CATG'C Cuts at: 1132 2783 1132 Size: 1651 3774 SspI AAT'ATT Cuts at: 5 52 3349 5 Size: 47 3297 2081 Fragments arranged by size: 3297 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5425 StyI C'CwwG_G Cuts at: 513 1065 2628 2864 513 Size: 552 1563 236 3074 Fragments arranged by size: 3074 1563 552 236 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2489 3452 3469 3622 3807 4252 325 Size: 1255 909 963 17 153 185 445 1498 Fragments arranged by size: 1498 1255 963 909 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3671 5383 96 Size: 274 80 33 51 1443 1694 1712 138 Fragments arranged by size: 1712 1694 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5385 5417 5385 Size: 32 5393 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5425 XbaI T'CTAG_A Cuts at: 2761 2761 Size: 5425 XhoI C'TCGA_G Cuts at: 1943 2279 1943 Size: 336 5089 XmaI C'CCGG_G Cuts at: 1870 2750 1870 Size: 880 4545 XmnI GAAnn'nnTTC Cuts at: 3554 3554 Size: 5425 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3233 276 Size: 53 83 186 936 1699 2468 Fragments arranged by size: 2468 1699 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PspXI PstI PvuI PvuII SacII SalI SanDI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AscI AvrII BaeI BbvCI BfrBI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoRV FalI FseI FspAI NaeI NgoMIV NruI NsiI PacI PfoI PmlI PsrI RsrII SacI SapI SexAI SfiI SrfI SwaI XcmI