Result of FASTA (omim) for
pFN21AB7841
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7841, 504 aa
1>>>pF1KB7841 504 - 504 aa - 504 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3728+/-0.000392; mu= 9.2007+/- 0.025
mean_var=128.0934+/-25.715, 0's: 0 Z-trim(115.8): 28 B-trim: 293 in 1/57
Lambda= 0.113321
statistics sampled from 26479 (26507) to 26479 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.311), width: 16
Scan time: 9.040
The best scores are: opt bits E(85289)
NP_001121632 (OMIM: 609784) upstream-binding prote ( 504) 3376 563.4 5.4e-160
NP_005644 (OMIM: 189889) alpha-globin transcriptio ( 502) 2517 423.0 1e-117
NP_001166923 (OMIM: 189889) alpha-globin transcrip ( 501) 2500 420.2 7e-117
NP_001121633 (OMIM: 609784) upstream-binding prote ( 540) 1867 316.7 1.1e-85
NP_055332 (OMIM: 609784) upstream-binding protein ( 540) 1867 316.7 1.1e-85
XP_016859391 (OMIM: 609785) PREDICTED: transcripti ( 406) 1863 316.0 1.3e-85
NP_055368 (OMIM: 609785) transcription factor CP2- ( 479) 1854 314.6 4.2e-85
XP_016859393 (OMIM: 609785) PREDICTED: transcripti ( 273) 1399 240.0 6.4e-63
XP_016859394 (OMIM: 609785) PREDICTED: transcripti ( 273) 1391 238.7 1.6e-62
NP_001166924 (OMIM: 189889) alpha-globin transcrip ( 450) 1099 191.1 5.7e-48
XP_016859392 (OMIM: 609785) PREDICTED: transcripti ( 274) 790 140.5 6.1e-33
XP_016859390 (OMIM: 609786) PREDICTED: grainyhead- ( 467) 385 74.4 8.1e-13
XP_005246216 (OMIM: 609786) PREDICTED: grainyhead- ( 429) 383 74.0 9.5e-13
NP_937825 (OMIM: 609786) grainyhead-like protein 1 ( 618) 385 74.5 1e-12
XP_016859389 (OMIM: 609786) PREDICTED: grainyhead- ( 479) 360 70.3 1.4e-11
XP_006711947 (OMIM: 609786) PREDICTED: grainyhead- ( 441) 358 70.0 1.6e-11
XP_011508645 (OMIM: 609786) PREDICTED: grainyhead- ( 583) 360 70.4 1.7e-11
XP_006711945 (OMIM: 609786) PREDICTED: grainyhead- ( 630) 360 70.4 1.8e-11
XP_011540172 (OMIM: 606713,608317) PREDICTED: grai ( 509) 351 68.9 4.1e-11
NP_001181939 (OMIM: 606713,608317) grainyhead-like ( 556) 351 68.9 4.4e-11
XP_011540171 (OMIM: 606713,608317) PREDICTED: grai ( 556) 351 68.9 4.4e-11
NP_937816 (OMIM: 606713,608317) grainyhead-like pr ( 602) 351 68.9 4.7e-11
NP_067003 (OMIM: 606713,608317) grainyhead-like pr ( 607) 351 68.9 4.7e-11
NP_937817 (OMIM: 606713,608317) grainyhead-like pr ( 626) 351 68.9 4.9e-11
XP_011515609 (OMIM: 608576,608641,616029) PREDICTE ( 591) 343 67.6 1.1e-10
NP_001317522 (OMIM: 608576,608641,616029) grainyhe ( 609) 343 67.6 1.2e-10
XP_011515608 (OMIM: 608576,608641,616029) PREDICTE ( 609) 343 67.6 1.2e-10
NP_079191 (OMIM: 608576,608641,616029) grainyhead- ( 625) 343 67.6 1.2e-10
>>NP_001121632 (OMIM: 609784) upstream-binding protein 1 (504 aa)
initn: 3376 init1: 3376 opt: 3376 Z-score: 2993.3 bits: 563.4 E(85289): 5.4e-160
Smith-Waterman score: 3376; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)
10 20 30 40 50 60
pF1KB7 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTSPQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 STCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGAD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 NGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNF
430 440 450 460 470 480
490 500
pF1KB7 QDESCFLFSTVKAESSDGIHIILK
::::::::::::::::::::::::
NP_001 QDESCFLFSTVKAESSDGIHIILK
490 500
>>NP_005644 (OMIM: 189889) alpha-globin transcription fa (502 aa)
initn: 2124 init1: 1693 opt: 2517 Z-score: 2234.4 bits: 423.0 E(85289): 1e-117
Smith-Waterman score: 2517; 73.3% identity (90.4% similar) in 509 aa overlap (1-504:1-502)
10 20 30 40 50
pF1KB7 MAWVLKM---DEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDG
:::.::. :::::::::.::::::::::::::::::::::::::::::::.:::: :.
NP_005 MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSII
:.. :::::.:::::::::::::::::::::::::::::::::.:..:::::::::::.
NP_005 ENKILPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 RVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPA
::::::::::::::::::::.:::::::.::.:::::::::: :.::.:::.::::::::
NP_005 RVVFHDRRLQYTEHQQLEGWRWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 KRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKP
::::.:::::::::::: ::::::::::::.:.::::.:::::::.::::::::::::::
NP_005 KRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKP
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 KGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTS
:::::::::::::::::: ::::::::::.:::::::::::. .::::::::. :.:
NP_005 KGADRKQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPE--ITYVNNSPSPG--FNS
250 260 270 280 290
300 310 320 330 340 350
pF1KB7 PQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFS
..:. :. ..:.: :::: . .. ... :..: ::.:::: .::::..::::.:::
NP_005 -SHSSFSLGEGNGS-PNHQPEPPPPVT-DNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB7 GADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASS
::::::::..:..:::: ::::::.:.::.: ::::::::::.:. . : ::: ..
NP_005 GADLLKLTRDDVIQICGPADGIRLFNALKGRMVRPRLTIYVCQESLQLREQQQQQQQQQQ
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB7 ASENG--SGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQ
:.: .:. .:::::::::. : :...:.: .:.: ::.:.:.:::::::.:.::.
NP_005 KHEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFSISPCQISQIYKQGPTGIHVLISDE
420 430 440 450 460 470
480 490 500
pF1KB7 MVQNFQDESCFLFSTVKAESSDGIHIILK
:.::::.:.::...:.:::..:. :::::
NP_005 MIQNFQEEACFILDTMKAETNDSYHIILK
480 490 500
>>NP_001166923 (OMIM: 189889) alpha-globin transcription (501 aa)
initn: 2457 init1: 1693 opt: 2500 Z-score: 2219.4 bits: 420.2 E(85289): 7e-117
Smith-Waterman score: 2500; 73.1% identity (90.2% similar) in 509 aa overlap (1-504:1-501)
10 20 30 40 50
pF1KB7 MAWVLKM---DEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDG
:::.::. :::::::::.::::::::::::::::::::::::::::::::.:::: :.
NP_001 MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSII
:.. :::::.:::::::::::::::::::::::::::::::::.:..:::::::::::.
NP_001 ENKILPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 RVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPA
::::::::::::::::::::.:::::::.::.:::::::::: :.::.:::.::::::::
NP_001 RVVFHDRRLQYTEHQQLEGWRWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 KRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKP
::::.:::::::::::: ::::::::::::.:.::::.:::::::.::::::::::::::
NP_001 KRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKP
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 KGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTS
:::::::::::::::::: ::::::::::.:::::::::::. .::::::::. :.:
NP_001 KGADRKQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPE--ITYVNNSPSPG--FNS
250 260 270 280 290
300 310 320 330 340 350
pF1KB7 PQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFS
..:. :. ..:.: :::: . .. ... :..: ::.:::: .::::..::::.:::
NP_001 -SHSSFSLGEGNGS-PNHQPEPPPPVT-DNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB7 GADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASS
::::::::..:..:::: ::::::.:.::.: ::::::::::.:. . : ::: ..
NP_001 GADLLKLTRDDVIQICGPADGIRLFNALKGRMVRPRLTIYVCQESLQLREQQQQQQQQQQ
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB7 ASENG--SGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQ
:.: .:. .:::::::::. : :...:.: .:.: ::.:.:.:::::::.:.::.
NP_001 KHEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFSISPCQISQIYKQGPTGIHVLISDE
420 430 440 450 460 470
480 490 500
pF1KB7 MVQNFQDESCFLFSTVKAESSDGIHIILK
:.::::.:.::...:.: :..:. :::::
NP_001 MIQNFQEEACFILDTMK-ETNDSYHIILK
480 490 500
>>NP_001121633 (OMIM: 609784) upstream-binding protein 1 (540 aa)
initn: 3362 init1: 1847 opt: 1867 Z-score: 1659.6 bits: 316.7 E(85289): 1.1e-85
Smith-Waterman score: 3273; 93.3% identity (93.3% similar) in 536 aa overlap (1-500:1-536)
10 20 30 40 50 60
pF1KB7 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
190 200 210 220 230 240
250 260 270
pF1KB7 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTE---------------------------
:::::::::::::::::::::::::::::::::
NP_001 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKKSSKRTLPADY
250 260 270 280 290 300
280 290 300 310 320
pF1KB7 ---------CSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTS
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDSLAKRGSCSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTS
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB7 GEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB7 LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVAR
430 440 450 460 470 480
450 460 470 480 490 500
pF1KB7 KLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK
490 500 510 520 530 540
>>NP_055332 (OMIM: 609784) upstream-binding protein 1 is (540 aa)
initn: 3362 init1: 1847 opt: 1867 Z-score: 1659.6 bits: 316.7 E(85289): 1.1e-85
Smith-Waterman score: 3273; 93.3% identity (93.3% similar) in 536 aa overlap (1-500:1-536)
10 20 30 40 50 60
pF1KB7 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
190 200 210 220 230 240
250 260 270
pF1KB7 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTE---------------------------
:::::::::::::::::::::::::::::::::
NP_055 DRKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKKSSKRTLPADY
250 260 270 280 290 300
280 290 300 310 320
pF1KB7 ---------CSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTS
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GDSLAKRGSCSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTS
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB7 GEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB7 LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVAR
430 440 450 460 470 480
450 460 470 480 490 500
pF1KB7 KLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK
490 500 510 520 530 540
>>XP_016859391 (OMIM: 609785) PREDICTED: transcription f (406 aa)
initn: 1850 init1: 1446 opt: 1863 Z-score: 1657.9 bits: 316.0 E(85289): 1.3e-85
Smith-Waterman score: 1863; 69.4% identity (90.1% similar) in 395 aa overlap (32-425:16-402)
10 20 30 40 50 60
pF1KB7 AWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEH
.:.: . :::::::::::. .: ..:..
XP_016 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
10 20 30 40
70 80 90 100 110 120
pF1KB7 PPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVF
::.:::.:::::::::::.:::::::::::::::.:.:::.::. ..: : :::::::::
XP_016 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 HDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTS
::::::::::::::::.:.:::::.::.:::.::::.: :..:.::::::::::::::.:
XP_016 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGAD
::::::::::::::::::::::::::.:.::::::::::::.::::::::::::::::::
XP_016 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB7 RKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAY-VNNSPSPAPTFTSPQQ
:::::::::::::::.:::::::::.::::::::::::. :: ::..:::. . ::
XP_016 RKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDV--AYQVNSAPSPSYN-GSP--
230 240 250 260 270
310 320 330 340 350 360
pF1KB7 STCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGAD
.. .. ..:.: :.: . : ...... :::.::..:::: .::::.. :::..:::::
XP_016 NSFGLGEGNAS-PTHPVE-ALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGAD
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB7 LLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASE
:::....::::::: ::::::.:..:.:.:::..:::::.: .. : :.. .:. :.
XP_016 LLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQKRDGSGDSN
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB7 NGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNF
..::
XP_016 LSDGAELPR
400
>>NP_055368 (OMIM: 609785) transcription factor CP2-like (479 aa)
initn: 2156 init1: 1446 opt: 1854 Z-score: 1648.9 bits: 314.6 E(85289): 4.2e-85
Smith-Waterman score: 2176; 68.1% identity (89.2% similar) in 474 aa overlap (32-504:16-476)
10 20 30 40 50 60
pF1KB7 AWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEH
.:.: . :::::::::::. .: ..:..
NP_055 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
10 20 30 40
70 80 90 100 110 120
pF1KB7 PPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVF
::.:::.:::::::::::.:::::::::::::::.:.:::.::. ..: : :::::::::
NP_055 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 HDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTS
::::::::::::::::.:.:::::.::.:::.::::.: :..:.::::::::::::::.:
NP_055 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGAD
::::::::::::::::::::::::::.:.::::::::::::.::::::::::::::::::
NP_055 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB7 RKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAY-VNNSPSPAPTFTSPQQ
:::::::::::::::.:::::::::.:::::::::::: .:: ::..:::. . ::
NP_055 RKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPD--VAYQVNSAPSPSYN-GSP--
230 240 250 260 270
310 320 330 340 350 360
pF1KB7 STCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGAD
.. .. ..:.: :.: . : ...... :::.::..:::: .::::.. :::..:::::
NP_055 NSFGLGEGNAS-PTHPVE-ALPVGSDHLLPSASIQDAQQWLHRNRFSQFCRLFASFSGAD
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB7 LLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASE
:::....::::::: ::::::.:..:.:.:::..:::::.: .. : ::. .:..
NP_055 LLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRV-PLQQKRDGSGDS
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB7 NGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQMVQNF
: : :::::.:::. . :. .:.: ...: ..:..::::::::::..::..:::::
NP_055 NLS----VYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEMVQNF
400 410 420 430 440 450
490 500
pF1KB7 QDESCFLFSTVKAESSDGIHIILK
::::::..::.::::.:: :::::
NP_055 QDESCFVLSTIKAESNDGYHIILKCGL
460 470
>>XP_016859393 (OMIM: 609785) PREDICTED: transcription f (273 aa)
initn: 1417 init1: 1389 opt: 1399 Z-score: 1250.5 bits: 240.0 E(85289): 6.4e-63
Smith-Waterman score: 1399; 79.3% identity (92.6% similar) in 256 aa overlap (32-279:16-270)
10 20 30 40 50 60
pF1KB7 AWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEH
.:.: . :::::::::::. .: ..:..
XP_016 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
10 20 30 40
70 80 90 100 110 120
pF1KB7 PPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVF
::.:::.:::::::::::.:::::::::::::::.:.:::.::. ..: : :::::::::
XP_016 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 HDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTS
::::::::::::::::.:.:::::.::.:::.::::.: :..:.::::::::::::::.:
XP_016 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGAD
::::::::::::::::::::::::::.:.::::::::::::.::::::::::::::::::
XP_016 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
170 180 190 200 210 220
250 260 270 280 290
pF1KB7 RKQKTDREKMEKRTAHEKEKYQPSYDTTILTE----CS----PWPDAPTAYVNNSPSPAP
:::::::::::::::.:::::::::.:::::: :: :: .
XP_016 RKQKTDREKMEKRTAQEKEKYQPSYETTILTEPQPLCSSADCPWEERSW
230 240 250 260 270
300 310 320 330 340 350
pF1KB7 TFTSPQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLF
>>XP_016859394 (OMIM: 609785) PREDICTED: transcription f (273 aa)
initn: 1385 init1: 1385 opt: 1391 Z-score: 1243.5 bits: 238.7 E(85289): 1.6e-62
Smith-Waterman score: 1391; 82.2% identity (95.9% similar) in 242 aa overlap (32-273:16-256)
10 20 30 40 50 60
pF1KB7 AWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEH
.:.: . :::::::::::. .: ..:..
XP_016 MLFWHTQPEHYNQHNSGSY-LRDVLALPIFKQEEPQLSPENEARL
10 20 30 40
70 80 90 100 110 120
pF1KB7 PPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVF
::.:::.:::::::::::.:::::::::::::::.:.:::.::. ..: : :::::::::
XP_016 PPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 HDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTS
::::::::::::::::.:.:::::.::.:::.::::.: :..:.::::::::::::::.:
XP_016 HDRRLQYTEHQQLEGWRWSRPGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRAS
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 AFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGAD
::::::::::::::::::::::::::.:.::::::::::::.::::::::::::::::::
XP_016 AFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFKPKGAD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB7 RKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTSPQQS
:::::::::::::::.:::::::::.::::::
XP_016 RKQKTDREKMEKRTAQEKEKYQPSYETTILTEEAQRDPLGTSLAPGVTY
230 240 250 260 270
310 320 330 340 350 360
pF1KB7 TCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADL
>>NP_001166924 (OMIM: 189889) alpha-globin transcription (450 aa)
initn: 1850 init1: 1074 opt: 1099 Z-score: 982.2 bits: 191.1 E(85289): 5.7e-48
Smith-Waterman score: 2057; 64.0% identity (80.4% similar) in 509 aa overlap (1-504:1-450)
10 20 30 40 50
pF1KB7 MAWVLKM---DEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDG
:::.::. :::::::::.::::::::::::::::::::::::::::::::.:::: :.
NP_001 MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSII
:.. :::::.:::::::::::::::::::::::::::::::::.:..:::::::::::.
NP_001 ENKILPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 RVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPA
::::::::::::::::::::.:::::::.::.:::::::::: :.::.:::.::::::::
NP_001 RVVFHDRRLQYTEHQQLEGWRWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 KRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKP
::::.::: :
NP_001 KRTSVFIQ---------------------------------------------------P
240 250 260 270 280 290
pF1KB7 KGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPSPAPTFTS
:::::::::::::::::: ::::::::::.:::::::::::. .::::::::. :.:
NP_001 KGADRKQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPE--ITYVNNSPSPG--FNS
190 200 210 220 230 240
300 310 320 330 340 350
pF1KB7 PQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFS
..:. :. ..:.: :::: . .. ... :..: ::.:::: .::::..::::.:::
NP_001 -SHSSFSLGEGNGS-PNHQPEPPPPVT-DNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFS
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB7 GADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQGQQQAASS
::::::::..:..:::: ::::::.:.::.: ::::::::::.:. . : ::: ..
NP_001 GADLLKLTRDDVIQICGPADGIRLFNALKGRMVRPRLTIYVCQESLQLREQQQQQQQQQQ
310 320 330 340 350 360
420 430 440 450 460 470
pF1KB7 ASENG--SGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHILVSDQ
:.: .:. .:::::::::. : :...:.: .:.: ::.:.:.:::::::.:.::.
NP_001 KHEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFSISPCQISQIYKQGPTGIHVLISDE
370 380 390 400 410 420
480 490 500
pF1KB7 MVQNFQDESCFLFSTVKAESSDGIHIILK
:.::::.:.::...:.: :..:. :::::
NP_001 MIQNFQEEACFILDTMK-ETNDSYHIILK
430 440 450
504 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:52:07 2016 done: Sat Nov 5 09:52:08 2016
Total Scan time: 9.040 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]