Result of FASTA (omim) for
pFN21AB9502
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9502, 1173 aa
1>>>pF1KB9502 1173 - 1173 aa - 1173 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0999+/-0.000401; mu= 4.9381+/- 0.025
mean_var=202.5884+/-41.127, 0's: 0 Z-trim(118.5): 18 B-trim: 71 in 2/49
Lambda= 0.090109
statistics sampled from 31600 (31616) to 31600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.371), width: 16
Scan time: 17.920
The best scores are: opt bits E(85289)
NP_060591 (OMIM: 610348) SMC5-SMC6 complex localiz (1173) 7749 1021.0 0
XP_005270022 (OMIM: 610348) PREDICTED: SMC5-SMC6 c (1172) 7732 1018.8 0
NP_001129595 (OMIM: 610348) SMC5-SMC6 complex loca (1186) 7660 1009.5 0
XP_011538246 (OMIM: 610348) PREDICTED: SMC5-SMC6 c (1109) 7286 960.8 0
NP_001230699 (OMIM: 610348) SMC5-SMC6 complex loca ( 63) 347 58.0 2.2e-08
>>NP_060591 (OMIM: 610348) SMC5-SMC6 complex localizatio (1173 aa)
initn: 7749 init1: 7749 opt: 7749 Z-score: 5453.3 bits: 1021.0 E(85289): 0
Smith-Waterman score: 7749; 99.9% identity (99.9% similar) in 1173 aa overlap (1-1173:1-1173)
10 20 30 40 50 60
pF1KB9 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 YGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB9 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
1090 1100 1110 1120 1130 1140
1150 1160 1170
pF1KB9 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
:::::::::::::::::::::::::::::::::
NP_060 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
1150 1160 1170
>>XP_005270022 (OMIM: 610348) PREDICTED: SMC5-SMC6 compl (1172 aa)
initn: 5592 init1: 5592 opt: 7732 Z-score: 5441.4 bits: 1018.8 E(85289): 0
Smith-Waterman score: 7732; 99.8% identity (99.8% similar) in 1173 aa overlap (1-1173:1-1172)
10 20 30 40 50 60
pF1KB9 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_005 NLSNVENGHLSRKRSSSDSWEPTS-GSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
310 320 330 340 350
370 380 390 400 410 420
pF1KB9 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB9 YGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB9 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
600 610 620 630 640 650
670 680 690 700 710 720
pF1KB9 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
660 670 680 690 700 710
730 740 750 760 770 780
pF1KB9 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
720 730 740 750 760 770
790 800 810 820 830 840
pF1KB9 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
780 790 800 810 820 830
850 860 870 880 890 900
pF1KB9 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
840 850 860 870 880 890
910 920 930 940 950 960
pF1KB9 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
900 910 920 930 940 950
970 980 990 1000 1010 1020
pF1KB9 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
960 970 980 990 1000 1010
1030 1040 1050 1060 1070 1080
pF1KB9 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
1020 1030 1040 1050 1060 1070
1090 1100 1110 1120 1130 1140
pF1KB9 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
1080 1090 1100 1110 1120 1130
1150 1160 1170
pF1KB9 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
:::::::::::::::::::::::::::::::::
XP_005 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
1140 1150 1160 1170
>>NP_001129595 (OMIM: 610348) SMC5-SMC6 complex localiza (1186 aa)
initn: 7660 init1: 7660 opt: 7660 Z-score: 5390.7 bits: 1009.5 E(85289): 0
Smith-Waterman score: 7660; 99.9% identity (99.9% similar) in 1162 aa overlap (1-1162:1-1162)
10 20 30 40 50 60
pF1KB9 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPLGAKFQLSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIERKYKPRQEQRKQNDIIPGKN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRESMIPKARESF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 YGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQTPAATGKPPALSKGLRSQSSDYTGHV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIKSPIRIGEEDSTDDEDGLLEE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQSAVEKLILKSG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDS
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQSLLINLMKNIRDWNTKVPELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLV
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPSDLLKKMVLKKKAEQPDGIIDDSLHLE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB9 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGALEKHVKCDIREDARLFYRTKV
1090 1100 1110 1120 1130 1140
1150 1160 1170
pF1KB9 KDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
::::::::::::::::::::::
NP_001 KDLVARIHGKWQEIIQNCRPTQVSFCYTISCILNSFAEWHSSYCLK
1150 1160 1170 1180
>>XP_011538246 (OMIM: 610348) PREDICTED: SMC5-SMC6 compl (1109 aa)
initn: 7286 init1: 7286 opt: 7286 Z-score: 5128.4 bits: 960.8 E(85289): 0
Smith-Waterman score: 7286; 99.9% identity (99.9% similar) in 1109 aa overlap (65-1173:1-1109)
40 50 60 70 80 90
pF1KB9 AAAGKRTESPGDRKQSIIDFFKPASKQDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLS
::::::::::::::::::::::::::::::
XP_011 MLDSPQKSNIKYGGSRLSITGTEQFERKLS
10 20 30
100 110 120 130 140 150
pF1KB9 SPKESKPKRVPPEKSPIIEAFMKGVKEHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPKESKPKRVPPEKSPIIEAFMKGVKEHHEDHGIHESRRPCLSLASKYLAKGTNIYVPSS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB9 YHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSR
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB9 SLSSRSSLSRHHPEESPLGAKFQLSLASYCRERELKRLRKEQMEQRINSENSFSEASSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLSSRSSLSRHHPEESPLGAKFQLSLASYCRERELKRLRKEQMEQRINSENSFSEASSLS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB9 LKSSIERKYKPRQEQRKQNDIIPGKNNLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKSSIERKYKPRQEQRKQNDIIPGKNNLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPE
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB9 KRKRNSVDSDLKSTRESMIPKARESFLEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRKRNSVDSDLKSTRESMIPKARESFLEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISK
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB9 EPSDETDGSSAGLAPSNSGNSGHHSTRNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EPSDETDGSSAGLAPSNSGNSGHHSTRNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKAS
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB9 NLQKNKTASSTTKEKETKLPLLSRVPSAGSSLVPLNAKNCALPVSKKDKERSSSKECSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLQKNKTASSTTKEKETKLPLLSRVPSAGSSLVPLNAKNCALPVSKKDKERSSSKECSGH
400 410 420 430 440 450
520 530 540 550 560 570
pF1KB9 STESTKHKEHKAKTNKADSNVSSGKIYGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSD
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_011 STESTKHKEHKAKTNKADSNVSSGKISGGPLRSEYGTPTKSPPAALEVVPCIPSPAAPSD
460 470 480 490 500 510
580 590 600 610 620 630
pF1KB9 KAPSEGESSGNSNAGSSALKRKLRGDFDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAPSEGESSGNSNAGSSALKRKLRGDFDSDEESLGYNLDSDEEEETLKSLEEIMALNFNQ
520 530 540 550 560 570
640 650 660 670 680 690
pF1KB9 TPAATGKPPALSKGLRSQSSDYTGHVHPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPAATGKPPALSKGLRSQSSDYTGHVHPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIR
580 590 600 610 620 630
700 710 720 730 740 750
pF1KB9 QGRGIKSPIRIGEEDSTDDEDGLLEEHKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGRGIKSPIRIGEEDSTDDEDGLLEEHKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIF
640 650 660 670 680 690
760 770 780 790 800 810
pF1KB9 NQYTLDLRDSGFIGQSAVEKLILKSGKTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NQYTLDLRDSGFIGQSAVEKLILKSGKTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMM
700 710 720 730 740 750
820 830 840 850 860 870
pF1KB9 SVHTDCIVSVQILSTLMEITIRNDTFSDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVHTDCIVSVQILSTLMEITIRNDTFSDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLEN
760 770 780 790 800 810
880 890 900 910 920 930
pF1KB9 LQPDFNEDYLVSETQTTSRGKESEDSSYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQPDFNEDYLVSETQTTSRGKESEDSSYKPIFSTLPETNILNVVKFLGLCTSIHPEGYQD
820 830 840 850 860 870
940 950 960 970 980 990
pF1KB9 REIMLLILMLFKMSLEKQLKQIPLVDFQSLLINLMKNIRDWNTKVPELCLGINELSSHPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REIMLLILMLFKMSLEKQLKQIPLVDFQSLLINLMKNIRDWNTKVPELCLGINELSSHPH
880 890 900 910 920 930
1000 1010 1020 1030 1040 1050
pF1KB9 NLLWLVQLVPNWTSRGRQLRQCLSLVIISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLLWLVQLVPNWTSRGRQLRQCLSLVIISKLLDEKHEDVPNASNLQVSVLHRYLVQMKPS
940 950 960 970 980 990
1060 1070 1080 1090 1100 1110
pF1KB9 DLLKKMVLKKKAEQPDGIIDDSLHLELEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLLKKMVLKKKAEQPDGIIDDSLHLELEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFV
1000 1010 1020 1030 1040 1050
1120 1130 1140 1150 1160 1170
pF1KB9 LLCGALEKHVKCDIREDARLFYRTKVKDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLCGALEKHVKCDIREDARLFYRTKVKDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS
1060 1070 1080 1090 1100
>>NP_001230699 (OMIM: 610348) SMC5-SMC6 complex localiza (63 aa)
initn: 369 init1: 347 opt: 347 Z-score: 271.6 bits: 58.0 E(85289): 2.2e-08
Smith-Waterman score: 347; 100.0% identity (100.0% similar) in 47 aa overlap (1-47:1-47)
10 20 30 40 50 60
pF1KB9 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASK
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRYRAEGLRRGRVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QDRHMLDSPQKSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVK
NP_001 ARV
1173 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:03:16 2016 done: Fri Nov 4 00:03:18 2016
Total Scan time: 17.920 Total Display time: 0.180
Function used was FASTA [36.3.4 Apr, 2011]