Result of FASTA (omim) for
pFN21AB9483
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9483, 857 aa
1>>>pF1KB9483 857 - 857 aa - 857 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6604+/-0.000505; mu= 5.9567+/- 0.032
mean_var=244.1507+/-48.869, 0's: 0 Z-trim(115.0): 29 B-trim: 0 in 0/56
Lambda= 0.082081
statistics sampled from 25202 (25230) to 25202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.296), width: 16
Scan time: 11.010
The best scores are: opt bits E(85289)
NP_036218 (OMIM: 604888) general transcription fac ( 886) 2809 347.1 2.1e-94
XP_005247022 (OMIM: 604888) PREDICTED: general tra ( 494) 2798 345.6 3.4e-94
NP_001193703 (OMIM: 604888) general transcription ( 413) 2620 324.4 6.7e-88
>>NP_036218 (OMIM: 604888) general transcription factor (886 aa)
initn: 5574 init1: 2800 opt: 2809 Z-score: 1815.8 bits: 347.1 E(85289): 2.1e-94
Smith-Waterman score: 5520; 96.7% identity (96.7% similar) in 886 aa overlap (1-857:1-886)
10 20 30 40 50 60
pF1KB9 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
370 380 390 400 410 420
430 440 450
pF1KB9 GDLYLDVAEAFLDV-----------------------------ECLKALGYMERAAESYG
:::::::::::::: :::::::::::::::::
NP_036 GDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYG
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB9 KVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRS
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB9 TLLFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TLLFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSN
550 560 570 580 590 600
580 590 600 610 620 630
pF1KB9 DQESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DQESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYD
610 620 630 640 650 660
640 650 660 670 680 690
pF1KB9 DRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHR
670 680 690 700 710 720
700 710 720 730 740 750
pF1KB9 FCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 FCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHM
730 740 750 760 770 780
760 770 780 790 800 810
pF1KB9 ASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALEL
790 800 810 820 830 840
820 830 840 850
pF1KB9 PPLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
850 860 870 880
>>XP_005247022 (OMIM: 604888) PREDICTED: general transcr (494 aa)
initn: 3049 init1: 2788 opt: 2798 Z-score: 1812.0 bits: 345.6 E(85289): 3.4e-94
Smith-Waterman score: 2995; 94.1% identity (94.1% similar) in 494 aa overlap (393-857:1-494)
370 380 390 400 410 420
pF1KB9 EEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMGD
::::::::::::::::::::::::::::::
XP_005 MVCLVHLNILEPLNPLLTTLVEQNPEDMGD
10 20 30
430 440 450
pF1KB9 LYLDVAEAFLDV-----------------------------ECLKALGYMERAAESYGKV
:::::::::::: :::::::::::::::::::
XP_005 LYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYGKV
40 50 60 70 80 90
460 470 480 490 500 510
pF1KB9 VDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTL
100 110 120 130 140 150
520 530 540 550 560 570
pF1KB9 LFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSNDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSNDQ
160 170 180 190 200 210
580 590 600 610 620 630
pF1KB9 ESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYDDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYDDR
220 230 240 250 260 270
640 650 660 670 680 690
pF1KB9 QKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHRFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHRFC
280 290 300 310 320 330
700 710 720 730 740 750
pF1KB9 LRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHMAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHMAS
340 350 360 370 380 390
760 770 780 790 800 810
pF1KB9 QKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALELPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALELPP
400 410 420 430 440 450
820 830 840 850
pF1KB9 LVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
460 470 480 490
>>NP_001193703 (OMIM: 604888) general transcription fact (413 aa)
initn: 2620 init1: 2620 opt: 2620 Z-score: 1699.1 bits: 324.4 E(85289): 6.7e-88
Smith-Waterman score: 2620; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)
10 20 30 40 50 60
pF1KB9 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNVCNKICT
370 380 390 400 410
430 440 450 460 470 480
pF1KB9 GDLYLDVAEAFLDVECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQLGQPEKA
857 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:50:08 2016 done: Thu Nov 3 23:50:10 2016
Total Scan time: 11.010 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]