FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9476, 349 aa
  1>>>pF1KB9476 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0041+/-0.000808; mu= 12.8104+/- 0.049
 mean_var=72.3242+/-14.258, 0's: 0 Z-trim(107.9): 20  B-trim: 39 in 1/52
 Lambda= 0.150811
 statistics sampled from 9853 (9867) to 9853 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.303), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS2849.1 TWF2 gene_id:11344|Hs108|chr3           ( 349) 2330 516.0 1.9e-146
CCDS31780.2 TWF1 gene_id:5756|Hs108|chr12          ( 350) 1615 360.4 1.3e-99
CCDS55818.1 TWF1 gene_id:5756|Hs108|chr12          ( 357) 1591 355.2 4.9e-98


>>CCDS2849.1 TWF2 gene_id:11344|Hs108|chr3                (349 aa)
 initn: 2330 init1: 2330 opt: 2330  Z-score: 2742.7  bits: 516.0 E(32554): 1.9e-146
Smith-Waterman score: 2330; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KB9 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHFFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 PLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHFFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 YKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDG
              250       260       270       280       290       300

              310       320       330       340         
pF1KB9 AELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 AELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS
              310       320       330       340         

>>CCDS31780.2 TWF1 gene_id:5756|Hs108|chr12               (350 aa)
 initn: 1607 init1: 1607 opt: 1615  Z-score: 1901.9  bits: 360.4 E(32554): 1.3e-99
Smith-Waterman score: 1615; 65.4% identity (91.0% similar) in 344 aa overlap (1-344:1-344)

               10        20        30        40        50        60
pF1KB9 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
       :.:::::.:.:..::.::.:: :. ::.:. ::.::::.:. ..:   ::.:::  ::::
CCDS31 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
       :. .::::.:.:::::::::.::.:.:::::.: :: ::::::::::.::::::::::::
CCDS31 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAF
       .:::::.:.:. ::.:.: : ..:::::.::.::.::.::::.:...:..:::::::.::
CCDS31 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHFFL
       :.. :: .::..:.....::.:...:.. : : :..:  :.. .::.:.:.:.:::::::
CCDS31 PISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDG
       :::.:::: :::.::::::::: :::.:::::::::::::. ::....... .:::: .:
CCDS31 YKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIRKIEIDNG
              250       260       270       280       290       300

              310       320       330       340          
pF1KB9 AELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS 
        ::::.:::.:::::::: ::.:::::::.:::: .::::::.:      
CCDS31 DELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
              310       320       330       340       350

>>CCDS55818.1 TWF1 gene_id:5756|Hs108|chr12               (357 aa)
 initn: 1574 init1: 812 opt: 1591  Z-score: 1873.6  bits: 355.2 E(32554): 4.9e-98
Smith-Waterman score: 1591; 64.1% identity (89.2% similar) in 351 aa overlap (1-344:1-351)

               10        20        30        40        50        60
pF1KB9 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
       :.:::::.:.:..::.::.:: :. ::.:. ::.::::.:. ..:   ::.:::  ::::
CCDS55 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
       :. .::::.:.:::::::::.::.:.:::::.: :: ::::::::::.::::::::::::
CCDS55 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
               70        80        90       100       110       120

              130       140       150       160              170   
pF1KB9 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINE-------VKTEISVESKHQ
       .:::::.:.:. ::.:.: : ..:::::.::.::.::.:::       :.:...:..:::
CCDS55 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KB9 TLQGLAFPLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDA
       ::::.:::.. :: .::..:.....::.:...:.. : : :..:  :.. .::.:.:.:.
CCDS55 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
              190       200       210       220       230       240

           240       250       260       270       280       290   
pF1KB9 ARYHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAK
       ::::::::::.:::: :::.::::::::: :::.:::::::::::::. ::....... .
CCDS55 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
              250       260       270       280       290       300

           300       310       320       330       340          
pF1KB9 KIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS 
       :::: .: ::::.:::.:::::::: ::.:::::::.:::: .::::::.:      
CCDS55 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
              310       320       330       340       350       




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:45:35 2016 done: Thu Nov  3 23:45:36 2016
 Total Scan time:  2.210 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]