Result of FASTA (omim) for
pFN21AB9475
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9475, 343 aa
1>>>pF1KB9475 343 - 343 aa - 343 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9063+/-0.000325; mu= 14.3880+/- 0.020
mean_var=95.0832+/-18.901, 0's: 0 Z-trim(117.0): 20 B-trim: 335 in 1/57
Lambda= 0.131529
statistics sampled from 28680 (28700) to 28680 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.337), width: 16
Scan time: 7.550
The best scores are: opt bits E(85289)
XP_016865067 (OMIM: 609433) PREDICTED: BRCA1-A com ( 349) 2242 435.4 8.6e-122
XP_005265993 (OMIM: 609433) PREDICTED: BRCA1-A com ( 349) 2242 435.4 8.6e-122
XP_016865068 (OMIM: 609433) PREDICTED: BRCA1-A com ( 349) 2242 435.4 8.6e-122
XP_016865066 (OMIM: 609433) PREDICTED: BRCA1-A com ( 438) 2039 397.0 4.1e-110
XP_005265990 (OMIM: 609433) PREDICTED: BRCA1-A com ( 438) 2039 397.0 4.1e-110
XP_005265989 (OMIM: 609433) PREDICTED: BRCA1-A com ( 438) 2039 397.0 4.1e-110
XP_016865065 (OMIM: 609433) PREDICTED: BRCA1-A com ( 438) 2039 397.0 4.1e-110
NP_001304890 (OMIM: 609433) BRCA1-A complex subuni ( 553) 2037 396.7 6.3e-110
XP_005265992 (OMIM: 609433) PREDICTED: BRCA1-A com ( 416) 2032 395.6 9.8e-110
XP_006714937 (OMIM: 609433) PREDICTED: BRCA1-A com ( 416) 2032 395.6 9.8e-110
XP_005265991 (OMIM: 609433) PREDICTED: BRCA1-A com ( 416) 2032 395.6 9.8e-110
XP_016865064 (OMIM: 609433) PREDICTED: BRCA1-A com ( 620) 2032 395.8 1.3e-109
XP_016865063 (OMIM: 609433) PREDICTED: BRCA1-A com ( 641) 2032 395.8 1.4e-109
NP_001186226 (OMIM: 609433) BRCA1-A complex subuni ( 719) 2032 395.8 1.5e-109
NP_001186227 (OMIM: 609433) BRCA1-A complex subuni ( 719) 2032 395.8 1.5e-109
XP_005265987 (OMIM: 609433) PREDICTED: BRCA1-A com ( 719) 2032 395.8 1.5e-109
NP_057374 (OMIM: 609433) BRCA1-A complex subunit R ( 719) 2032 395.8 1.5e-109
XP_006714934 (OMIM: 609433) PREDICTED: BRCA1-A com ( 719) 2032 395.8 1.5e-109
XP_011532872 (OMIM: 609433) PREDICTED: BRCA1-A com ( 537) 853 172.0 2.7e-42
XP_011532870 (OMIM: 609433) PREDICTED: BRCA1-A com ( 572) 853 172.0 2.8e-42
>>XP_016865067 (OMIM: 609433) PREDICTED: BRCA1-A complex (349 aa)
initn: 2252 init1: 1437 opt: 2242 Z-score: 2307.5 bits: 435.4 E(85289): 8.6e-122
Smith-Waterman score: 2242; 98.3% identity (98.3% similar) in 349 aa overlap (1-343:1-349)
10 20 30 40 50 60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGKWQQ
:::::::::::::::::::::::::::::::::::::: ::::::::::::::::
XP_016 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGKWQQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
250 260 270 280 290 300
300 310 320 330 340
pF1KB9 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
310 320 330 340
>>XP_005265993 (OMIM: 609433) PREDICTED: BRCA1-A complex (349 aa)
initn: 2252 init1: 1437 opt: 2242 Z-score: 2307.5 bits: 435.4 E(85289): 8.6e-122
Smith-Waterman score: 2242; 98.3% identity (98.3% similar) in 349 aa overlap (1-343:1-349)
10 20 30 40 50 60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGKWQQ
:::::::::::::::::::::::::::::::::::::: ::::::::::::::::
XP_005 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGKWQQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
250 260 270 280 290 300
300 310 320 330 340
pF1KB9 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
310 320 330 340
>>XP_016865068 (OMIM: 609433) PREDICTED: BRCA1-A complex (349 aa)
initn: 2252 init1: 1437 opt: 2242 Z-score: 2307.5 bits: 435.4 E(85289): 8.6e-122
Smith-Waterman score: 2242; 98.3% identity (98.3% similar) in 349 aa overlap (1-343:1-349)
10 20 30 40 50 60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGKWQQ
:::::::::::::::::::::::::::::::::::::: ::::::::::::::::
XP_016 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGKWQQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
250 260 270 280 290 300
300 310 320 330 340
pF1KB9 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
310 320 330 340
>>XP_016865066 (OMIM: 609433) PREDICTED: BRCA1-A complex (438 aa)
initn: 2049 init1: 1234 opt: 2039 Z-score: 2098.0 bits: 397.0 E(85289): 4.1e-110
Smith-Waterman score: 2039; 97.8% identity (98.1% similar) in 322 aa overlap (28-343:117-438)
10 20 30 40 50
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS
::.:::::::::::::::::::::::::::
XP_016 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS
90 100 110 120 130 140
60 70 80 90 100 110
pF1KB9 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
150 160 170 180 190 200
120 130 140 150 160 170
pF1KB9 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
210 220 230 240 250 260
180 190 200 210 220 230
pF1KB9 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK
::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_016 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK
270 280 290 300 310 320
240 250 260 270 280 290
pF1KB9 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
330 340 350 360 370 380
300 310 320 330 340
pF1KB9 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
390 400 410 420 430
>>XP_005265990 (OMIM: 609433) PREDICTED: BRCA1-A complex (438 aa)
initn: 2049 init1: 1234 opt: 2039 Z-score: 2098.0 bits: 397.0 E(85289): 4.1e-110
Smith-Waterman score: 2039; 97.8% identity (98.1% similar) in 322 aa overlap (28-343:117-438)
10 20 30 40 50
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS
::.:::::::::::::::::::::::::::
XP_005 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS
90 100 110 120 130 140
60 70 80 90 100 110
pF1KB9 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
150 160 170 180 190 200
120 130 140 150 160 170
pF1KB9 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
210 220 230 240 250 260
180 190 200 210 220 230
pF1KB9 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK
::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_005 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK
270 280 290 300 310 320
240 250 260 270 280 290
pF1KB9 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
330 340 350 360 370 380
300 310 320 330 340
pF1KB9 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
390 400 410 420 430
>>XP_005265989 (OMIM: 609433) PREDICTED: BRCA1-A complex (438 aa)
initn: 2049 init1: 1234 opt: 2039 Z-score: 2098.0 bits: 397.0 E(85289): 4.1e-110
Smith-Waterman score: 2039; 97.8% identity (98.1% similar) in 322 aa overlap (28-343:117-438)
10 20 30 40 50
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS
::.:::::::::::::::::::::::::::
XP_005 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS
90 100 110 120 130 140
60 70 80 90 100 110
pF1KB9 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
150 160 170 180 190 200
120 130 140 150 160 170
pF1KB9 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
210 220 230 240 250 260
180 190 200 210 220 230
pF1KB9 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK
::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_005 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK
270 280 290 300 310 320
240 250 260 270 280 290
pF1KB9 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
330 340 350 360 370 380
300 310 320 330 340
pF1KB9 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
390 400 410 420 430
>>XP_016865065 (OMIM: 609433) PREDICTED: BRCA1-A complex (438 aa)
initn: 2049 init1: 1234 opt: 2039 Z-score: 2098.0 bits: 397.0 E(85289): 4.1e-110
Smith-Waterman score: 2039; 97.8% identity (98.1% similar) in 322 aa overlap (28-343:117-438)
10 20 30 40 50
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS
::.:::::::::::::::::::::::::::
XP_016 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS
90 100 110 120 130 140
60 70 80 90 100 110
pF1KB9 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
150 160 170 180 190 200
120 130 140 150 160 170
pF1KB9 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
210 220 230 240 250 260
180 190 200 210 220 230
pF1KB9 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK
::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_016 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK
270 280 290 300 310 320
240 250 260 270 280 290
pF1KB9 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
330 340 350 360 370 380
300 310 320 330 340
pF1KB9 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
390 400 410 420 430
>>NP_001304890 (OMIM: 609433) BRCA1-A complex subunit RA (553 aa)
initn: 2039 init1: 1224 opt: 2037 Z-score: 2094.5 bits: 396.7 E(85289): 6.3e-110
Smith-Waterman score: 2037; 92.2% identity (95.1% similar) in 344 aa overlap (6-343:211-553)
10 20 30
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGI
.... .:: . .. : :. .:::::
NP_001 EPWDHTEKTEEEPVSGSSGSWDQSSQPVFENVNVKSFDRCTGHSAEHTQC-GKPQSSQGI
190 200 210 220 230
40 50 60 70 80 90
pF1KB9 VEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPG
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB9 SRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCN
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB9 GLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQL
360 370 380 390 400 410
220 230 240 250 260
pF1KB9 AKA------EGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSE
::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKADQGDGPEGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSE
420 430 440 450 460 470
270 280 290 300 310 320
pF1KB9 TGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGS
480 490 500 510 520 530
330 340
pF1KB9 RTRTKAGRGRRRKF
::::::::::::::
NP_001 RTRTKAGRGRRRKF
540 550
>>XP_005265992 (OMIM: 609433) PREDICTED: BRCA1-A complex (416 aa)
initn: 2259 init1: 1224 opt: 2032 Z-score: 2091.1 bits: 395.6 E(85289): 9.8e-110
Smith-Waterman score: 2032; 95.2% identity (97.0% similar) in 331 aa overlap (19-343:87-416)
10 20 30 40
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA
....: : . .::::::::::::::::::
XP_005 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA
60 70 80 90 100 110
50 60 70 80 90 100
pF1KB9 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
120 130 140 150 160 170
110 120 130 140 150 160
pF1KB9 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
180 190 200 210 220 230
170 180 190 200 210 220
pF1KB9 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG
:::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_005 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG
240 250 260 270 280 290
230 240 250 260 270 280
pF1KB9 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
300 310 320 330 340 350
290 300 310 320 330 340
pF1KB9 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
360 370 380 390 400 410
pF1KB9 F
:
XP_005 F
>--
initn: 278 init1: 234 opt: 234 Z-score: 247.2 bits: 54.4 E(85289): 5e-07
Smith-Waterman score: 234; 73.9% identity (89.1% similar) in 46 aa overlap (1-46:1-46)
10 20 30 40 50 60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
::::::::::::::::::::::::::::::. : :..::... .
XP_005 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKNECGQGEQASEKNECISEDMGDEDKEERQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
XP_005 SRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHGQSSQGIVEETSEEGNSVPASQSVA
70 80 90 100 110 120
>>XP_006714937 (OMIM: 609433) PREDICTED: BRCA1-A complex (416 aa)
initn: 2259 init1: 1224 opt: 2032 Z-score: 2091.1 bits: 395.6 E(85289): 9.8e-110
Smith-Waterman score: 2032; 95.2% identity (97.0% similar) in 331 aa overlap (19-343:87-416)
10 20 30 40
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA
....: : . .::::::::::::::::::
XP_006 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA
60 70 80 90 100 110
50 60 70 80 90 100
pF1KB9 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
120 130 140 150 160 170
110 120 130 140 150 160
pF1KB9 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
180 190 200 210 220 230
170 180 190 200 210 220
pF1KB9 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG
:::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_006 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG
240 250 260 270 280 290
230 240 250 260 270 280
pF1KB9 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
300 310 320 330 340 350
290 300 310 320 330 340
pF1KB9 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
360 370 380 390 400 410
pF1KB9 F
:
XP_006 F
>--
initn: 278 init1: 234 opt: 234 Z-score: 247.2 bits: 54.4 E(85289): 5e-07
Smith-Waterman score: 234; 73.9% identity (89.1% similar) in 46 aa overlap (1-46:1-46)
10 20 30 40 50 60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
::::::::::::::::::::::::::::::. : :..::... .
XP_006 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKNECGQGEQASEKNECISEDMGDEDKEERQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
XP_006 SRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHGQSSQGIVEETSEEGNSVPASQSVA
70 80 90 100 110 120
343 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:44:24 2016 done: Thu Nov 3 23:44:25 2016
Total Scan time: 7.550 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]