(Circular) (Six-base) MAPSORT of: pFN21AB9474.seq Check: 8455 from: 1 to: 5287 pFN21AB9474 5287 bp With 182 enzymes: SgfI * January 16, 2009 15:28 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3097 278 Size: 53 83 186 936 1561 2468 Fragments arranged by size: 2468 1561 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2630 1937 Size: 693 4594 Acc65I G'GTAC_C Cuts at: 2608 2608 Size: 5287 AclI AA'CG_TT Cuts at: 1563 3414 3787 1563 Size: 1851 373 3063 Fragments arranged by size: 3063 1851 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3350 4734 5002 1632 Size: 1718 1384 268 1917 Fragments arranged by size: 1917 1718 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5090 AflIII A'CryG_T Cuts at: 1203 4186 5163 1203 Size: 2983 977 1327 Fragments arranged by size: 2983 1327 977 AgeI A'CCGG_T Cuts at: 2237 4118 2237 Size: 1881 3406 AhdI GACnn_n'nnGTC Cuts at: 4016 4016 Size: 5287 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5287 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5287 AlwNI CAG_nnn'CTG Cuts at: 3030 4602 3030 Size: 1572 3715 ApaLI G'TGCA_C Cuts at: 3344 4500 3344 Size: 1156 4131 ApoI r'AATT_y Cuts at: 1493 2014 2596 2822 2974 5083 1493 Size: 521 582 226 152 2109 1697 Fragments arranged by size: 2109 1697 582 521 226 152 AseI AT'TA_AT Cuts at: 160 1032 3841 160 Size: 872 2809 1606 Fragments arranged by size: 2809 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5287 AvaI C'yCGr_G Cuts at: 1870 1943 2272 2612 1870 Size: 73 329 340 4545 Fragments arranged by size: 4545 340 329 73 BamHI G'GATC_C Cuts at: 2617 2984 2617 Size: 367 4920 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2608 4063 618 Size: 325 217 627 821 1455 1842 Fragments arranged by size: 1842 1455 821 627 325 217 BanII G_rGCy'C Cuts at: 1391 2606 1391 Size: 1215 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2336 928 Size: 971 437 3879 Fragments arranged by size: 3879 971 437 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3478 3512 1903 Size: 34 1541 34 3678 Fragments arranged by size: 3678 1541 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3179 4389 3179 Size: 1210 4077 BclI T'GATC_A Cuts at: 1548 1548 Size: 5287 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2033 2114 2570 Size: 107 122 71 631 605 361 81 456 Cuts at: 2570 3898 136 Size: 1328 1525 Fragments arranged by size: 1525 1328 631 605 456 361 122 107 81 71 BglII A'GATC_T Cuts at: 5282 5282 Size: 5287 BlpI GC'TnA_GC Cuts at: 2704 2704 Size: 5287 Bme1580I G_kGCm'C Cuts at: 1790 3348 4504 1790 Size: 1558 1156 2573 Fragments arranged by size: 2573 1558 1156 BmgBI CAC'GTC Cuts at: 1318 2022 1318 Size: 704 4583 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3018 3976 442 Size: 416 53 83 399 24 1601 958 1753 Fragments arranged by size: 1753 1601 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2291 1056 Size: 1235 4052 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3947 1239 Size: 2708 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2231 3412 4277 4575 2231 Size: 1181 865 298 2943 Fragments arranged by size: 2943 1181 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3950 882 Size: 617 2451 2219 Fragments arranged by size: 2451 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3078 493 Size: 711 1874 2702 Fragments arranged by size: 2702 1874 711 BsaBI GATnn'nnATC Cuts at: 5281 5281 Size: 5287 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3094 3476 4111 275 Size: 53 83 186 936 1561 382 635 1451 Fragments arranged by size: 1561 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2237 3720 4118 4392 4539 4950 2237 Size: 1483 398 274 147 411 2574 Fragments arranged by size: 2574 1483 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5062 Fragments arranged by size: 5062 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2128 1186 Size: 942 4345 BseYI C'CCAG_C Cuts at: 4490 4986 4490 Size: 496 4791 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4714 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2737 3498 4526 1540 Size: 275 186 736 761 1028 2301 Fragments arranged by size: 2301 1028 761 736 275 186 BsiHKAI G_wGCw'C Cuts at: 3348 3433 4504 3348 Size: 85 1071 4131 Fragments arranged by size: 4131 1071 85 BsmI GAATG_Cn' Cuts at: 2798 2891 2798 Size: 93 5194 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2606 3348 3433 4504 1391 Size: 399 816 742 85 1071 2174 Fragments arranged by size: 2174 1071 816 742 399 85 BspEI T'CCGG_A Cuts at: 4950 4950 Size: 5287 BspHI T'CATG_A Cuts at: 3176 4906 3176 Size: 1730 3557 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2642 844 Size: 1798 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3174 1394 Size: 429 1351 3507 Fragments arranged by size: 3507 1351 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3782 3956 65 Size: 1183 2534 174 1396 Fragments arranged by size: 2534 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2237 2503 2573 3931 4118 1700 Size: 110 427 266 70 1358 187 2869 Fragments arranged by size: 2869 1358 427 266 187 110 70 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5287 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5287 BssSI C'ACGA_G Cuts at: 3347 4359 3347 Size: 1012 4275 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5287 BstBI TT'CG_AA Cuts at: 4091 4091 Size: 5287 BstEII G'GTnAC_C Cuts at: 1184 2230 1184 Size: 1046 4241 BstXI CCAn_nnnn'nTGG Cuts at: 2263 2263 Size: 5287 BstYI r'GATC_y Cuts at: 1972 2617 2984 3369 3386 4838 4924 4936 5282 Size: 645 367 385 17 1452 86 12 346 Cuts at: 5282 1972 Size: 1977 Fragments arranged by size: 1977 1452 645 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4735 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4548 Fragments arranged by size: 4548 683 56 BtsI GCAGTG_nn' Cuts at: 2803 3597 3617 2803 Size: 794 20 4473 Fragments arranged by size: 4473 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5287 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5252 DraI TTT'AAA Cuts at: 2591 2591 Size: 5287 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4294 809 Size: 507 2978 1802 Fragments arranged by size: 2978 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2034 2734 3623 Size: 54 1425 50 275 18 204 700 889 Cuts at: 3623 5252 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 700 275 204 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2734 1537 Size: 275 922 4090 Fragments arranged by size: 4090 922 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3217 1353 Size: 1864 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2014 3874 4248 4394 387 Size: 1064 138 425 1860 374 146 1280 Fragments arranged by size: 1860 1280 1064 425 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3350 3947 4734 5002 1239 Size: 393 1718 597 787 268 1524 Fragments arranged by size: 1718 1524 787 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2268 2277 2268 Size: 9 5278 EcoRI G'AATT_C Cuts at: 2014 2596 2974 2014 Size: 582 378 4327 Fragments arranged by size: 4327 582 378 FspI TGC'GCA Cuts at: 3793 3793 Size: 5287 HaeII r_GCGC'y Cuts at: 1678 2227 4434 1678 Size: 549 2207 2531 Fragments arranged by size: 2531 2207 549 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3928 3960 4002 4034 1373 Size: 32 135 32 2356 32 42 32 2626 Fragments arranged by size: 2626 2356 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2631 2877 669 Size: 988 281 693 246 3079 Fragments arranged by size: 3079 988 693 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5287 HpaI GTT'AAC Cuts at: 2877 2877 Size: 5287 KpnI G_GTAC'C Cuts at: 2612 2612 Size: 5287 MfeI C'AATT_G Cuts at: 2886 2886 Size: 5287 MluI A'CGCG_T Cuts at: 5163 5163 Size: 5287 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4401 4585 1305 Size: 3096 184 2007 Fragments arranged by size: 3096 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3465 Fragments arranged by size: 3465 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2099 3245 3604 3763 518 Size: 648 933 1146 359 159 2042 Fragments arranged by size: 2042 1146 933 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2703 3380 4528 4773 1606 Size: 1097 677 1148 245 2120 Fragments arranged by size: 2120 1148 1097 677 245 NaeI GCC'GGC Cuts at: 2575 2575 Size: 5287 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4735 NdeI CA'TA_TG Cuts at: 387 387 Size: 5287 NgoMIV G'CCGG_C Cuts at: 2573 2573 Size: 5287 NheI G'CTAG_C Cuts at: 1052 2287 1052 Size: 1235 4052 NotI GC'GGCC_GC Cuts at: 2734 2734 Size: 5287 NspI r_CATG'y Cuts at: 1132 1229 2645 4190 1132 Size: 97 1416 1545 2229 Fragments arranged by size: 2229 1545 1416 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5287 PciI A'CATG_T Cuts at: 4186 4186 Size: 5287 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5287 PmeI GTTT'AAAC Cuts at: 2591 2591 Size: 5287 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2183 2215 3356 3388 4869 4901 2183 Size: 32 1141 32 1481 32 2569 Fragments arranged by size: 2569 1481 1141 32 32 32 PpuMI rG'GwC_Cy Cuts at: 2277 2277 Size: 5287 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5287 PsiI TTA'TAA Cuts at: 2857 2857 Size: 5287 PstI C_TGCA'G Cuts at: 830 2639 830 Size: 1809 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5287 SalI G'TCGA_C Cuts at: 1936 2629 1936 Size: 693 4594 SbfI CC_TGCA'GG Cuts at: 2639 2639 Size: 5287 ScaI AGT'ACT Cuts at: 3535 5247 3535 Size: 1712 3575 SfcI C'TryA_G Cuts at: 826 1045 2635 3770 4451 4642 826 Size: 219 1590 1135 681 191 1471 Fragments arranged by size: 1590 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5287 SgrAI Cr'CCGG_yG Cuts at: 1700 2237 1700 Size: 537 4750 SmaI CCC'GGG Cuts at: 1872 2614 1872 Size: 742 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2246 3391 4292 4554 820 Size: 197 926 303 1145 901 262 1553 Fragments arranged by size: 1553 1145 926 901 303 262 197 SnaBI TAC'GTA Cuts at: 493 3078 493 Size: 2585 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5287 SphI G_CATG'C Cuts at: 1132 2645 1132 Size: 1513 3774 SspI AAT'ATT Cuts at: 5 52 3211 5 Size: 47 3159 2081 Fragments arranged by size: 3159 2081 47 StuI AGG'CCT Cuts at: 1517 2057 1517 Size: 540 4747 StyI C'CwwG_G Cuts at: 513 1065 2052 2726 513 Size: 552 987 674 3074 Fragments arranged by size: 3074 987 674 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2024 2174 3314 3331 3484 3669 4114 Size: 1255 444 150 1140 17 153 185 445 Cuts at: 4114 325 Size: 1498 Fragments arranged by size: 1498 1255 1140 445 444 185 153 150 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3533 5245 96 Size: 274 80 33 51 1443 1556 1712 138 Fragments arranged by size: 1712 1556 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5247 5279 5247 Size: 32 5255 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5287 XbaI T'CTAG_A Cuts at: 2623 2623 Size: 5287 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2224 2314 2449 2224 Size: 90 135 5062 Fragments arranged by size: 5062 135 90 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5287 XmaI C'CCGG_G Cuts at: 1870 2612 1870 Size: 742 4545 XmnI GAAnn'nnTTC Cuts at: 3416 3416 Size: 5287 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3095 276 Size: 53 83 186 936 1561 2468 Fragments arranged by size: 2468 1561 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI