Result of FASTA (omim) for
pFN21AB9449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9449, 465 aa
1>>>pF1KB9449 465 - 465 aa - 465 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9116+/-0.000292; mu= 11.3001+/- 0.018
mean_var=120.0284+/-24.935, 0's: 0 Z-trim(121.3): 59 B-trim: 4035 in 2/52
Lambda= 0.117066
statistics sampled from 37597 (37673) to 37597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.442), width: 16
Scan time: 10.520
The best scores are: opt bits E(85289)
NP_002492 (OMIM: 164005,602535,614753) nuclear fac ( 441) 3003 517.8 2.3e-146
XP_005259976 (OMIM: 164005,602535,614753) PREDICTE ( 500) 2939 507.0 4.6e-143
NP_001257973 (OMIM: 164005,602535,614753) nuclear ( 433) 2935 506.3 6.5e-143
XP_005259975 (OMIM: 164005,602535,614753) PREDICTE ( 502) 2848 491.7 1.9e-138
XP_005259977 (OMIM: 164005,602535,614753) PREDICTE ( 494) 2780 480.2 5.5e-135
NP_001257972 (OMIM: 164005,602535,614753) nuclear ( 510) 2780 480.2 5.6e-135
XP_011526342 (OMIM: 164005,602535,614753) PREDICTE ( 518) 2780 480.2 5.7e-135
XP_016882326 (OMIM: 164005,602535,614753) PREDICTE ( 400) 2208 383.5 5.6e-106
XP_006722823 (OMIM: 164005,602535,614753) PREDICTE ( 459) 2144 372.8 1.1e-102
XP_005259974 (OMIM: 164005,602535,614753) PREDICTE ( 520) 2144 372.8 1.2e-102
NP_001138984 (OMIM: 600727) nuclear factor 1 A-typ ( 554) 2083 362.5 1.6e-99
NP_005586 (OMIM: 600727) nuclear factor 1 A-type i ( 498) 2043 355.7 1.6e-97
NP_001128145 (OMIM: 600727) nuclear factor 1 A-typ ( 509) 2043 355.7 1.7e-97
XP_016856851 (OMIM: 600727) PREDICTED: nuclear fac ( 490) 1984 345.7 1.6e-94
NP_001138983 (OMIM: 600727) nuclear factor 1 A-typ ( 501) 1984 345.8 1.6e-94
XP_011539817 (OMIM: 600727) PREDICTED: nuclear fac ( 516) 1824 318.7 2.3e-86
XP_011539814 (OMIM: 600727) PREDICTED: nuclear fac ( 527) 1824 318.7 2.3e-86
XP_011539816 (OMIM: 600727) PREDICTED: nuclear fac ( 519) 1765 308.8 2.3e-83
XP_016882324 (OMIM: 600729) PREDICTED: nuclear fac ( 439) 1634 286.6 9.2e-77
NP_001231933 (OMIM: 600729) nuclear factor 1 C-typ ( 439) 1634 286.6 9.2e-77
NP_005588 (OMIM: 600729) nuclear factor 1 C-type i ( 428) 1616 283.6 7.4e-76
NP_001231931 (OMIM: 600729) nuclear factor 1 C-typ ( 508) 1617 283.8 7.6e-76
XP_005259621 (OMIM: 600729) PREDICTED: nuclear fac ( 511) 1617 283.8 7.6e-76
XP_016882323 (OMIM: 600729) PREDICTED: nuclear fac ( 565) 1617 283.8 8.2e-76
XP_006716836 (OMIM: 600728) PREDICTED: nuclear fac ( 569) 1612 283.0 1.5e-75
NP_001177666 (OMIM: 600728) nuclear factor 1 B-typ ( 494) 1610 282.6 1.7e-75
XP_006716838 (OMIM: 600728) PREDICTED: nuclear fac ( 498) 1610 282.6 1.7e-75
XP_006716837 (OMIM: 600728) PREDICTED: nuclear fac ( 503) 1610 282.6 1.7e-75
XP_005251526 (OMIM: 600728) PREDICTED: nuclear fac ( 561) 1610 282.6 1.9e-75
XP_005251524 (OMIM: 600728) PREDICTED: nuclear fac ( 570) 1610 282.6 1.9e-75
XP_016870228 (OMIM: 600728) PREDICTED: nuclear fac ( 419) 1601 281.0 4.2e-75
NP_005587 (OMIM: 600728) nuclear factor 1 B-type i ( 420) 1599 280.7 5.3e-75
XP_005251527 (OMIM: 600728) PREDICTED: nuclear fac ( 487) 1599 280.7 6e-75
NP_001231934 (OMIM: 600729) nuclear factor 1 C-typ ( 430) 1587 278.7 2.2e-74
XP_016882325 (OMIM: 600729) PREDICTED: nuclear fac ( 419) 1569 275.6 1.8e-73
NP_995315 (OMIM: 600729) nuclear factor 1 C-type i ( 499) 1570 275.8 1.8e-73
XP_006722822 (OMIM: 600729) PREDICTED: nuclear fac ( 556) 1570 275.9 2e-73
NP_001177667 (OMIM: 600728) nuclear factor 1 B-typ ( 446) 1564 274.8 3.4e-73
XP_005251525 (OMIM: 600728) PREDICTED: nuclear fac ( 566) 1551 272.7 1.9e-72
XP_016870230 (OMIM: 600728) PREDICTED: nuclear fac ( 415) 1542 271.1 4.2e-72
XP_016870229 (OMIM: 600728) PREDICTED: nuclear fac ( 416) 1540 270.7 5.3e-72
XP_016870231 (OMIM: 600728) PREDICTED: nuclear fac ( 308) 465 89.1 1.9e-17
NP_001269716 (OMIM: 600728) nuclear factor 1 B-typ ( 309) 296 60.5 7.3e-09
XP_005251528 (OMIM: 600728) PREDICTED: nuclear fac ( 318) 296 60.5 7.5e-09
XP_016856852 (OMIM: 600727) PREDICTED: nuclear fac ( 271) 253 53.2 1e-06
>>NP_002492 (OMIM: 164005,602535,614753) nuclear factor (441 aa)
initn: 2700 init1: 2700 opt: 3003 Z-score: 2748.7 bits: 517.8 E(85289): 2.3e-146
Smith-Waterman score: 3003; 99.8% identity (99.8% similar) in 441 aa overlap (26-465:1-441)
10 20 30 40 50 60
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
:::::::::::::::::::::::::::::::::::
NP_002 MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
10 20 30
70 80 90 100 110 120
pF1KB9 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
280 290 300 310 320 330
370 380 390 400 410
pF1KB9 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHH
340 350 360 370 380 390
420 430 440 450 460
pF1KB9 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
400 410 420 430 440
>>XP_005259976 (OMIM: 164005,602535,614753) PREDICTED: n (500 aa)
initn: 2633 init1: 2633 opt: 2939 Z-score: 2689.5 bits: 507.0 E(85289): 4.6e-143
Smith-Waterman score: 2939; 97.5% identity (98.0% similar) in 445 aa overlap (22-465:57-500)
10 20 30 40 50
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAF
:: . : .:::::::::::::::::
XP_005 VCVHGRLCRRTLCRGELTGVHGCDRTWRCHGRDRAWRGY-QQRDEFHPFIEALLPHVRAF
30 40 50 60 70 80
60 70 80 90 100 110
pF1KB9 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
90 100 110 120 130 140
120 130 140 150 160 170
pF1KB9 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
150 160 170 180 190 200
180 190 200 210 220 230
pF1KB9 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
210 220 230 240 250 260
240 250 260 270 280 290
pF1KB9 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
270 280 290 300 310 320
300 310 320 330 340 350
pF1KB9 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKS
330 340 350 360 370 380
360 370 380 390 400 410
pF1KB9 GKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTH
390 400 410 420 430 440
420 430 440 450 460
pF1KB9 PTIRYHHH-GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
:::::::: ::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
450 460 470 480 490 500
>>NP_001257973 (OMIM: 164005,602535,614753) nuclear fact (433 aa)
initn: 2632 init1: 2632 opt: 2935 Z-score: 2686.7 bits: 506.3 E(85289): 6.5e-143
Smith-Waterman score: 2935; 99.8% identity (99.8% similar) in 432 aa overlap (35-465:2-433)
10 20 30 40 50 60
pF1KB9 CRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRK
::::::::::::::::::::::::::::::
NP_001 MDEFHPFIEALLPHVRAFSYTWFNLQARKRK
10 20 30
70 80 90 100 110 120
pF1KB9 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-GQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_001 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDS
340 350 360 370 380 390
430 440 450 460
pF1KB9 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
::::::::::::::::::::::::::::::::::::::::::
NP_001 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
400 410 420 430
>>XP_005259975 (OMIM: 164005,602535,614753) PREDICTED: n (502 aa)
initn: 2727 init1: 2700 opt: 2848 Z-score: 2606.4 bits: 491.7 E(85289): 1.9e-138
Smith-Waterman score: 2848; 96.1% identity (97.0% similar) in 436 aa overlap (26-460:1-436)
10 20 30 40 50 60
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
:::::::::::::::::::::::::::::::::::
XP_005 MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
10 20 30
70 80 90 100 110 120
pF1KB9 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
280 290 300 310 320 330
370 380 390 400 410
pF1KB9 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHH
340 350 360 370 380 390
420 430 440 450 460
pF1KB9 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
::::::::::::::::::::::: . .: .. :
XP_005 GQDSLKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTST
400 410 420 430 440 450
XP_005 APDGAALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
460 470 480 490 500
>>XP_005259977 (OMIM: 164005,602535,614753) PREDICTED: n (494 aa)
initn: 2659 init1: 2632 opt: 2780 Z-score: 2544.4 bits: 480.2 E(85289): 5.5e-135
Smith-Waterman score: 2780; 96.0% identity (97.0% similar) in 427 aa overlap (35-460:2-428)
10 20 30 40 50 60
pF1KB9 CRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRK
::::::::::::::::::::::::::::::
XP_005 MDEFHPFIEALLPHVRAFSYTWFNLQARKRK
10 20 30
70 80 90 100 110 120
pF1KB9 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-GQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_005 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDS
340 350 360 370 380 390
430 440 450 460
pF1KB9 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
::::::::::::::::::: . .: .. :
XP_005 LKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTSTAPDG
400 410 420 430 440 450
XP_005 AALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
460 470 480 490
>>NP_001257972 (OMIM: 164005,602535,614753) nuclear fact (510 aa)
initn: 2659 init1: 2632 opt: 2780 Z-score: 2544.2 bits: 480.2 E(85289): 5.6e-135
Smith-Waterman score: 2780; 96.0% identity (97.0% similar) in 427 aa overlap (35-460:18-444)
10 20 30 40 50 60
pF1KB9 CRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRK
::::::::::::::::::::::::::::::
NP_001 MEMSWARQSLAGIPAACDEFHPFIEALLPHVRAFSYTWFNLQARKRK
10 20 30 40
70 80 90 100 110 120
pF1KB9 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-GQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_001 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDS
350 360 370 380 390 400
430 440 450 460
pF1KB9 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
::::::::::::::::::: . .: .. :
NP_001 LKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTSTAPDG
410 420 430 440 450 460
NP_001 AALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
470 480 490 500 510
>>XP_011526342 (OMIM: 164005,602535,614753) PREDICTED: n (518 aa)
initn: 2659 init1: 2632 opt: 2780 Z-score: 2544.1 bits: 480.2 E(85289): 5.7e-135
Smith-Waterman score: 2780; 96.0% identity (97.0% similar) in 427 aa overlap (35-460:26-452)
10 20 30 40 50 60
pF1KB9 CRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRK
::::::::::::::::::::::::::::::
XP_011 MGATEPGGDTSSVCVWTATLSVRVCDEFHPFIEALLPHVRAFSYTWFNLQARKRK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDCFVTS
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPK
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSALSSQG
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-GQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_011 SSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDS
360 370 380 390 400 410
430 440 450 460
pF1KB9 LKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
::::::::::::::::::: . .: .. :
XP_011 LKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLPMPDSKSTSTAPDG
420 430 440 450 460 470
XP_011 AALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
480 490 500 510
>>XP_016882326 (OMIM: 164005,602535,614753) PREDICTED: n (400 aa)
initn: 2518 init1: 2185 opt: 2208 Z-score: 2023.6 bits: 383.5 E(85289): 5.6e-106
Smith-Waterman score: 2631; 90.5% identity (90.5% similar) in 441 aa overlap (26-465:1-400)
10 20 30 40 50 60
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
:::::::::::::::::::::::::::::::::::
XP_016 MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQA
10 20 30
70 80 90 100 110 120
pF1KB9 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTI
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHLSFQDC
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKSGKLDFCSAL
::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAG----------------
280 290 300 310
370 380 390 400 410
pF1KB9 SSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHH-
::::::::::::::::::::::::::::::::::
XP_016 -------------------------SPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHH
320 330 340 350
420 430 440 450 460
pF1KB9 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
360 370 380 390 400
>>XP_006722823 (OMIM: 164005,602535,614753) PREDICTED: n (459 aa)
initn: 2451 init1: 2118 opt: 2144 Z-score: 1964.4 bits: 372.8 E(85289): 1.1e-102
Smith-Waterman score: 2567; 88.3% identity (88.8% similar) in 445 aa overlap (22-465:57-459)
10 20 30 40 50
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAF
:: . : .:::::::::::::::::
XP_006 VCVHGRLCRRTLCRGELTGVHGCDRTWRCHGRDRAWRGY-QQRDEFHPFIEALLPHVRAF
30 40 50 60 70 80
60 70 80 90 100 110
pF1KB9 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
90 100 110 120 130 140
120 130 140 150 160 170
pF1KB9 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
150 160 170 180 190 200
180 190 200 210 220 230
pF1KB9 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
210 220 230 240 250 260
240 250 260 270 280 290
pF1KB9 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
270 280 290 300 310 320
300 310 320 330 340 350
pF1KB9 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAG-------
330 340 350 360 370
360 370 380 390 400 410
pF1KB9 GKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTH
::::::::::::::::::::::::::
XP_006 ----------------------------------SPRATASALHFPSTSIIQQSSPYFTH
380 390 400
420 430 440 450 460
pF1KB9 PTIRYHHH-GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
:::::::: ::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
410 420 430 440 450
>>XP_005259974 (OMIM: 164005,602535,614753) PREDICTED: n (520 aa)
initn: 2320 init1: 2118 opt: 2144 Z-score: 1963.6 bits: 372.8 E(85289): 1.2e-102
Smith-Waterman score: 2412; 84.5% identity (85.9% similar) in 440 aa overlap (22-460:57-454)
10 20 30 40 50
pF1KB9 MLPACRLPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAF
:: . : .:::::::::::::::::
XP_005 VCVHGRLCRRTLCRGELTGVHGCDRTWRCHGRDRAWRGY-QQRDEFHPFIEALLPHVRAF
30 40 50 60 70 80
60 70 80 90 100 110
pF1KB9 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPE
90 100 110 120 130 140
120 130 140 150 160 170
pF1KB9 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD
150 160 170 180 190 200
180 190 200 210 220 230
pF1KB9 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLP
210 220 230 240 250 260
240 250 260 270 280 290
pF1KB9 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSI
270 280 290 300 310 320
300 310 320 330 340 350
pF1KB9 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGPASLKKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAG-------
330 340 350 360 370
360 370 380 390 400 410
pF1KB9 GKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATASALHFPSTSIIQQSSPYFTH
::::::::::::::::::::::::::
XP_005 ----------------------------------SPRATASALHFPSTSIIQQSSPYFTH
380 390 400
420 430 440 450 460
pF1KB9 PTIRYHHH-GQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF
:::::::: ::::::::::::::::::::::: . .: .. :
XP_005 PTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQPNGSGQGKVPGSFLLPPPPPVARPVPLP
410 420 430 440 450 460
XP_005 MPDSKSTSTAPDGAALTPPSPSFATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL
470 480 490 500 510 520
465 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:26:52 2016 done: Thu Nov 3 23:26:54 2016
Total Scan time: 10.520 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]