Result of FASTA (ccds) for
pFN21AB4171
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4171, 1151 aa
1>>>pF1KB4171 1151 - 1151 aa - 1151 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.3128+/-0.00134; mu= -20.5435+/- 0.082
mean_var=654.2326+/-135.468, 0's: 0 Z-trim(115.9): 31 B-trim: 175 in 1/51
Lambda= 0.050143
statistics sampled from 16449 (16475) to 16449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.506), width: 16
Scan time: 6.150
The best scores are: opt bits E(32554)
CCDS55835.1 SMARCC2 gene_id:6601|Hs108|chr12 (1152) 7732 575.2 3.1e-163
CCDS81698.1 SMARCC2 gene_id:6601|Hs108|chr12 (1245) 7439 554.0 7.9e-157
CCDS8908.1 SMARCC2 gene_id:6601|Hs108|chr12 (1130) 7433 553.5 9.9e-157
CCDS8907.1 SMARCC2 gene_id:6601|Hs108|chr12 (1214) 3970 303.0 2.7e-81
CCDS2758.1 SMARCC1 gene_id:6599|Hs108|chr3 (1105) 2810 219.1 4.6e-56
>>CCDS55835.1 SMARCC2 gene_id:6601|Hs108|chr12 (1152 aa)
initn: 4089 init1: 3971 opt: 7732 Z-score: 3044.1 bits: 575.2 E(32554): 3.1e-163
Smith-Waterman score: 7732; 99.9% identity (99.9% similar) in 1152 aa overlap (1-1151:1-1152)
10 20 30 40 50 60
pF1KB4 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
490 500 510 520 530 540
550 560 570 580 590
pF1KB4 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPEL-TSASQQMLNFPDKGKEKP
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS55 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKP
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB4 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB4 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB4 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB4 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB4 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB4 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB4 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KB4 PFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAP
1090 1100 1110 1120 1130 1140
1140 1150
pF1KB4 SPGTVTPVPPPQ
::::::::::::
CCDS55 SPGTVTPVPPPQ
1150
>>CCDS81698.1 SMARCC2 gene_id:6601|Hs108|chr12 (1245 aa)
initn: 7521 init1: 3971 opt: 7439 Z-score: 2929.0 bits: 554.0 E(32554): 7.9e-157
Smith-Waterman score: 7439; 97.0% identity (97.9% similar) in 1150 aa overlap (1-1149:1-1145)
10 20 30 40 50 60
pF1KB4 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
490 500 510 520 530 540
550 560 570 580 590
pF1KB4 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPEL-TSASQQMLNFPDKGKEKP
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS81 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKP
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB4 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB4 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB4 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB4 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB4 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB4 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB4 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KB4 PFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAP
:::::::::::::::::::::::::...: .. : .: : : : . .: :
CCDS81 PFPNQQTPPSMMPGAVPGSGHPGVAGNAP--LGLPFG--MPPPPPPPAP-SIIPFGSLAD
1090 1100 1110 1120 1130
1140 1150
pF1KB4 SPGTVTPVPPPQ
: . :.::
CCDS81 SISINLPAPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLG
1140 1150 1160 1170 1180 1190
>>CCDS8908.1 SMARCC2 gene_id:6601|Hs108|chr12 (1130 aa)
initn: 4251 init1: 3971 opt: 7433 Z-score: 2927.3 bits: 553.5 E(32554): 9.9e-157
Smith-Waterman score: 7539; 98.0% identity (98.0% similar) in 1152 aa overlap (1-1151:1-1130)
10 20 30 40 50 60
pF1KB4 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
490 500 510 520 530 540
550 560 570 580 590
pF1KB4 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPEL-TSASQQMLNFPDKGKEKP
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS89 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKP
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB4 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB4 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB4 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB4 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB4 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB4 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB4 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KB4 PFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAP
::::::::::::::::::::::::: :::::::::::::
CCDS89 PFPNQQTPPSMMPGAVPGSGHPGVA----------------------DPGTPLPPDPTAP
1090 1100 1110
1140 1150
pF1KB4 SPGTVTPVPPPQ
::::::::::::
CCDS89 SPGTVTPVPPPQ
1120 1130
>>CCDS8907.1 SMARCC2 gene_id:6601|Hs108|chr12 (1214 aa)
initn: 7305 init1: 3755 opt: 3970 Z-score: 1572.9 bits: 303.0 E(32554): 2.7e-81
Smith-Waterman score: 7176; 94.4% identity (95.3% similar) in 1149 aa overlap (1-1149:1-1114)
10 20 30 40 50 60
pF1KB4 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELTSASQQMLNFPDKGKEKPT
:::::::::: :::::::::::::::::::
CCDS89 LVPLQPKTPQQ------------------------------TSASQQMLNFPDKGKEKPT
550 560 570
610 620 630 640 650 660
pF1KB4 DMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
580 590 600 610 620 630
670 680 690 700 710 720
pF1KB4 TQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS
640 650 660 670 680 690
730 740 750 760 770 780
pF1KB4 AAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 AAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER
700 710 720 730 740 750
790 800 810 820 830 840
pF1KB4 IEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 IEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKES
760 770 780 790 800 810
850 860 870 880 890 900
pF1KB4 EKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAA
820 830 840 850 860 870
910 920 930 940 950 960
pF1KB4 VKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD
880 890 900 910 920 930
970 980 990 1000 1010 1020
pF1KB4 RQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAP
940 950 960 970 980 990
1030 1040 1050 1060 1070 1080
pF1KB4 ASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 ASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSP
1000 1010 1020 1030 1040 1050
1090 1100 1110 1120 1130 1140
pF1KB4 FPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPS
::::::::::::::::::::::::...: .. : .: : : : . .: : :
CCDS89 FPNQQTPPSMMPGAVPGSGHPGVAGNAP--LGLPFG--MPPPPPPPAP-SIIPFGSLADS
1060 1070 1080 1090 1100
1150
pF1KB4 PGTVTPVPPPQ
. :.::
CCDS89 ISINLPAPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGS
1110 1120 1130 1140 1150 1160
>>CCDS2758.1 SMARCC1 gene_id:6599|Hs108|chr3 (1105 aa)
initn: 2813 init1: 1791 opt: 2810 Z-score: 1120.0 bits: 219.1 E(32554): 4.6e-56
Smith-Waterman score: 4518; 61.3% identity (79.6% similar) in 1161 aa overlap (1-1150:28-1094)
10 20 30
pF1KB4 MAV-RKKDGGPNVKYYEAADTVTQFDNVRLWLG
.:: :.::::: .:..:. .::.:.:.::.:::
CCDS27 MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWESPETVSQLDSVRVWLG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB4 KNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCH
:.::::..:. ::::.:..::::::::::..:::::.: .:::: :::.::::::.:::
CCDS27 KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGALCH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB4 ILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKL
::.::::.:..:::::.:.::::::::::::::.:::.:::::::.::::.: :.:. ::
CCDS27 ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 LGKLKDIIKRHQGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSY
.:::::::::::: :..:..::: .:: .. ..:::.::::...::::.:::.:::::
CCDS27 ANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQDDEEWLRPVMRKEKQVLVHWGFYPDSY
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 DTWIPASEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVNDDKNPVSRRKKI
:::. .....: .:: : :::: :::.::::::: ::::::::::::.....::: :..:
CCDS27 DTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIFNEWMNEEDYEVDENRKPVSFRQRI
250 260 270 280 290 300
280 290 300 310 320
pF1KB4 SAKTLTDEVNSPDSDRRDKKGG-NYKKRKRSPSPSP-TP-EAKKKNAKKGPSTPYTKSKR
:.:. . : ::. :::.:.. : .:::.:::: : :: :..::..::: .. : : .
CCDS27 STKN-EEPVRSPE--RRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRS
310 320 330 340 350
330 340 350 360 370 380
pF1KB4 GHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESME
..:.:::::::::..:.::::.:::.:::.:: :::::..::::::..:::::..:..
CCDS27 QKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLKKDSENTPVKGGTVADLDEQDEETVT
360 370 380 390 400 410
390 400 410 420 430 440
pF1KB4 TTGKDEDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEF
. :: :::. . ::.:... :: ::::::::.::::::::.::::: .:.:::::::::
CCDS27 AGGK-EDEDPA--KGDQSRSVDLGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEF
420 430 440 450 460 470
450 460 470 480 490 500
pF1KB4 FNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGL
:::::::::::::::::::::::::::::::::::::::::.:::::.::::::::::::
CCDS27 FNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGL
480 490 500 510 520 530
510 520 530 540 550 560
pF1KB4 INYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKTPQGRQVDADTKAGRKGKELDD
.::::: :::: :::::: ::.::::::::::::. ..::
CCDS27 VNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQ-------------------
540 550 560 570
570 580 590 600 610 620
pF1KB4 LVPETAKGKPELTSASQQMLNFPDKGKEKPTDMQNFGLRTDMYTKKNVPSKSKAAASATR
:: :.:::::::.:.::::.:.::::::::.:.::.. .:::.: :: :
CCDS27 -VP-----------AAQQMLNFPEKNKEKPVDLQNFGLRTDIYSKKTL-AKSKGA-SAGR
580 590 600 610 620
630 640 650 660 670 680
pF1KB4 EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPL
:::::::::::::::::::::::::::::::::::::::::::::::::::.:.::::::
CCDS27 EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPL
630 640 650 660 670 680
690 700 710 720 730 740
pF1KB4 AYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKV
::::.::::::::::::::::::::::::::::::.::::::...:::: ::::::.::
CCDS27 AYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKV
690 700 710 720 730 740
750 760 770 780 790 800
pF1KB4 EEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREGG
.:::...::.::..::::: :::: ::::..: : .: ..:.. .. : : .
CCDS27 QEAARASGKVDPTYGLESSCIAGTGPDEPEKLE--GAEEEKMEADPDGQQPEKAENK---
750 760 770 780 790
810 820 830 840 850 860
pF1KB4 GAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVV
.:.:. : .:...:..::.::: . : :. . ..: :: .:. ::..
CCDS27 --VENETDEG---------DKAQDGENEKNSEK-EQDSEVSEDTKSEEKETEEN--KELT
800 810 820 830 840
870 880 890 900 910 920
pF1KB4 ESEGER-----KTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVET
.. :: : :::..:.:::..::::::::.::.:::::::::::::::::::::::
CCDS27 DTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVET
850 860 870 880 890 900
930 940 950 960 970 980
pF1KB4 QMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQM
::::::::::::::::::::::.:::: ::::::..:: ::::::::::.::::: ::.
CCDS27 QMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQ
910 920 930 940 950 960
990 1000 1010 1020 1030 1040
pF1KB4 HQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIG
: :. : :. . : :::: : : : . : .
CCDS27 HGQNPQQAHQ-HSGGPGLAPLGAAGHP-------------------GMMPHQQPPPYPLM
970 980 990 1000
1050 1060 1070 1080 1090 1100
pF1KB4 QAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVA
. .:. : :::: .: : :: : .:.:. : :.: .: .. ::. .
CCDS27 H-------HQMPPPHPPQPGQIP-G---PG----SMMPGQHMPGRMIP-TVAANIHPSGS
1010 1020 1030 1040
1110 1120 1130 1140 1150
pF1KB4 AQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTA--PSPGTVTPVPPPQ
. .: . . ::.: :: :. :: : : : . ::::
CCDS27 GPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQPPPPPPADGVPPPPAPGPPASAAP
1050 1060 1070 1080 1090 1100
1151 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:31:04 2016 done: Thu Nov 3 21:31:05 2016
Total Scan time: 6.150 Total Display time: 0.290
Function used was FASTA [36.3.4 Apr, 2011]