(Circular) (Six-base) MAPSORT of: pFN21AB3951.seq Check: 4098 from: 1 to: 5620 pFN21AB3951 5620 bp With 182 enzymes: SgfI * January 16, 2009 15:24 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3430 278 Size: 53 83 186 936 1894 2468 Fragments arranged by size: 2468 1894 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2253 2353 2963 1937 Size: 316 100 610 4594 Fragments arranged by size: 4594 610 316 100 Acc65I G'GTAC_C Cuts at: 2941 2941 Size: 5620 AclI AA'CG_TT Cuts at: 1563 3747 4120 1563 Size: 2184 373 3063 Fragments arranged by size: 3063 2184 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2096 2622 3683 5067 5335 1632 Size: 464 526 1061 1384 268 1917 Fragments arranged by size: 1917 1384 1061 526 464 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5423 AflIII A'CryG_T Cuts at: 1203 2881 4519 5496 1203 Size: 1678 1638 977 1327 Fragments arranged by size: 1678 1638 1327 977 AgeI A'CCGG_T Cuts at: 4451 4451 Size: 5620 AhdI GACnn_n'nnGTC Cuts at: 4349 4349 Size: 5620 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5620 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2075 1184 Size: 891 4729 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2199 2231 2199 Size: 32 5588 AlwNI CAG_nnn'CTG Cuts at: 2600 3363 4935 2600 Size: 763 1572 3285 Fragments arranged by size: 3285 1572 763 ApaLI G'TGCA_C Cuts at: 2723 3677 4833 2723 Size: 954 1156 3510 Fragments arranged by size: 3510 1156 954 ApoI r'AATT_y Cuts at: 1493 2529 2556 2738 2929 3155 3307 5416 1493 Size: 1036 27 182 191 226 152 2109 1697 Fragments arranged by size: 2109 1697 1036 226 191 182 152 27 AseI AT'TA_AT Cuts at: 160 1032 4174 160 Size: 872 3142 1606 Fragments arranged by size: 3142 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5620 AvaI C'yCGr_G Cuts at: 1870 1943 2631 2945 1870 Size: 73 688 314 4545 Fragments arranged by size: 4545 688 314 73 BamHI G'GATC_C Cuts at: 2950 3317 2950 Size: 367 5253 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2008 2941 4396 618 Size: 325 217 627 221 933 1455 1842 Fragments arranged by size: 1842 1455 933 627 325 221 217 BanII G_rGCy'C Cuts at: 1391 2939 1391 Size: 1548 4072 BbeI G_GCGC'C Cuts at: 2012 2012 Size: 5620 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2815 928 Size: 971 916 3733 Fragments arranged by size: 3733 971 916 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3811 3845 1903 Size: 34 1874 34 3678 Fragments arranged by size: 3678 1874 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2605 3512 4722 2605 Size: 907 1210 3503 Fragments arranged by size: 3503 1210 907 BclI T'GATC_A Cuts at: 1548 1548 Size: 5620 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4231 136 Size: 107 122 71 631 605 2559 1525 Fragments arranged by size: 2559 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5615 5615 Size: 5620 BlpI GC'TnA_GC Cuts at: 3037 3037 Size: 5620 Bme1580I G_kGCm'C Cuts at: 1790 2727 3681 4837 1790 Size: 937 954 1156 2573 Fragments arranged by size: 2573 1156 954 937 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5620 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3351 4309 442 Size: 416 53 83 399 24 1934 958 1753 Fragments arranged by size: 1934 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5620 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2226 2440 4280 1239 Size: 987 214 1840 2579 Fragments arranged by size: 2579 1840 987 214 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3745 4610 4908 3745 Size: 865 298 4457 Fragments arranged by size: 4457 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2270 4283 882 Size: 617 771 2013 2219 Fragments arranged by size: 2219 2013 771 617 BsaAI yAC'GTr Cuts at: 493 1204 3411 493 Size: 711 2207 2702 Fragments arranged by size: 2702 2207 711 BsaBI GATnn'nnATC Cuts at: 5614 5614 Size: 5620 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2009 3427 3809 4444 Size: 53 83 186 936 476 1418 382 635 Cuts at: 4444 275 Size: 1451 Fragments arranged by size: 1451 1418 936 635 476 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4053 4451 4725 4872 5283 4053 Size: 398 274 147 411 4390 Fragments arranged by size: 4390 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2199 2229 2413 2443 2646 Size: 30 165 30 796 30 184 30 203 Cuts at: 2646 2676 1178 Size: 30 4122 Fragments arranged by size: 4122 796 203 184 165 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2096 2649 1186 Size: 910 553 4157 Fragments arranged by size: 4157 910 553 BseYI C'CCAG_C Cuts at: 4823 5319 4823 Size: 496 5124 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5047 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3070 3831 4859 1540 Size: 275 186 1069 761 1028 2301 Fragments arranged by size: 2301 1069 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2713 2727 3681 3766 4837 2713 Size: 14 954 85 1071 3496 Fragments arranged by size: 3496 1071 954 85 14 BsmI GAATG_Cn' Cuts at: 3131 3224 3131 Size: 93 5527 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2713 2727 2939 3681 3766 4837 1391 Size: 399 923 14 212 742 85 1071 2174 Fragments arranged by size: 2174 1071 923 742 399 212 85 14 BspEI T'CCGG_A Cuts at: 5283 5283 Size: 5620 BspHI T'CATG_A Cuts at: 2344 3509 5239 2344 Size: 1165 1730 2725 Fragments arranged by size: 2725 1730 1165 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2067 2630 2975 844 Size: 1223 563 345 3489 Fragments arranged by size: 3489 1223 563 345 BsrBI CCG'CTC Cuts at: 1394 1823 3507 1394 Size: 429 1684 3507 Fragments arranged by size: 3507 1684 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4115 4289 65 Size: 1183 2867 174 1396 Fragments arranged by size: 2867 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4264 4451 1700 Size: 110 2454 187 2869 Fragments arranged by size: 2869 2454 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5620 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5620 BssSI C'ACGA_G Cuts at: 3680 4692 3680 Size: 1012 4608 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5620 BstBI TT'CG_AA Cuts at: 2533 4424 2533 Size: 1891 3729 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5620 BstYI r'GATC_y Cuts at: 1972 2596 2950 3317 3702 3719 5171 5257 5269 Size: 624 354 367 385 17 1452 86 12 Cuts at: 5269 5615 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 624 385 367 354 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2167 2491 513 Size: 552 939 163 324 3642 Fragments arranged by size: 3642 939 552 324 163 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4881 Fragments arranged by size: 4881 683 56 BtsI GCAGTG_nn' Cuts at: 3136 3930 3950 3136 Size: 794 20 4806 Fragments arranged by size: 4806 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5620 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5585 DraI TTT'AAA Cuts at: 2924 2924 Size: 5620 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2770 4627 809 Size: 507 1454 1857 1802 Fragments arranged by size: 1857 1802 1454 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3067 3956 5585 Size: 54 1425 50 275 18 1237 889 1629 Cuts at: 5585 8 Size: 43 Fragments arranged by size: 1629 1425 1237 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3067 1537 Size: 275 1255 4090 Fragments arranged by size: 4090 1255 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2109 3550 1353 Size: 756 1441 3423 Fragments arranged by size: 3423 1441 756 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4207 4581 4727 387 Size: 1064 138 2618 374 146 1280 Fragments arranged by size: 2618 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2096 2226 2440 2622 3683 4280 5067 Size: 393 464 130 214 182 1061 597 787 Cuts at: 5067 5335 1239 Size: 268 1524 Fragments arranged by size: 1524 1061 787 597 464 393 268 214 182 130 EcoNI CCTnn'n_nnAGG Cuts at: 2565 2565 Size: 5620 EcoRI G'AATT_C Cuts at: 2929 3307 2929 Size: 378 5242 EcoRV GAT'ATC Cuts at: 2164 2512 2164 Size: 348 5272 FspI TGC'GCA Cuts at: 4126 4126 Size: 5620 HaeII r_GCGC'y Cuts at: 1678 2012 4767 1678 Size: 334 2755 2531 Fragments arranged by size: 2755 2531 334 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2646 2678 4261 4293 4335 Size: 32 135 32 1074 32 1583 32 42 Cuts at: 4335 4367 1373 Size: 32 2626 Fragments arranged by size: 2626 1583 1074 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2964 3210 669 Size: 988 281 1026 246 3079 Fragments arranged by size: 3079 1026 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5620 HpaI GTT'AAC Cuts at: 3210 3210 Size: 5620 KasI G'GCGC_C Cuts at: 2008 2008 Size: 5620 KpnI G_GTAC'C Cuts at: 2945 2945 Size: 5620 MfeI C'AATT_G Cuts at: 3219 3219 Size: 5620 MluI A'CGCG_T Cuts at: 5496 5496 Size: 5620 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4734 4918 1305 Size: 3429 184 2007 Fragments arranged by size: 3429 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3798 Fragments arranged by size: 3798 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2237 3578 3937 4096 518 Size: 648 1071 1341 359 159 2042 Fragments arranged by size: 2042 1341 1071 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3036 3713 4861 5106 1606 Size: 1430 677 1148 245 2120 Fragments arranged by size: 2120 1430 1148 677 245 NarI GG'CG_CC Cuts at: 2009 2009 Size: 5620 NcoI C'CATG_G Cuts at: 513 1065 2004 2167 2491 513 Size: 552 939 163 324 3642 Fragments arranged by size: 3642 939 552 324 163 NdeI CA'TA_TG Cuts at: 387 387 Size: 5620 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5620 NotI GC'GGCC_GC Cuts at: 3067 3067 Size: 5620 NspI r_CATG'y Cuts at: 1132 1229 2449 2978 4523 1132 Size: 97 1220 529 1545 2229 Fragments arranged by size: 2229 1545 1220 529 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5620 PciI A'CATG_T Cuts at: 4519 4519 Size: 5620 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5620 PmeI GTTT'AAAC Cuts at: 2924 2924 Size: 5620 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2199 2231 3689 3721 5202 5234 2199 Size: 32 1458 32 1481 32 2585 Fragments arranged by size: 2585 1481 1458 32 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5620 PsiI TTA'TAA Cuts at: 3190 3190 Size: 5620 PstI C_TGCA'G Cuts at: 830 2708 2972 830 Size: 1878 264 3478 Fragments arranged by size: 3478 1878 264 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5620 SalI G'TCGA_C Cuts at: 1936 2962 1936 Size: 1026 4594 SbfI CC_TGCA'GG Cuts at: 2972 2972 Size: 5620 ScaI AGT'ACT Cuts at: 3868 5580 3868 Size: 1712 3908 SfcI C'TryA_G Cuts at: 826 1045 2266 2704 2968 4103 4784 4975 826 Size: 219 1221 438 264 1135 681 191 1471 Fragments arranged by size: 1471 1221 1135 681 438 264 219 191 SfoI GGC'GCC Cuts at: 2010 2010 Size: 5620 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5620 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5620 SmaI CCC'GGG Cuts at: 1872 2947 1872 Size: 1075 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3724 4625 4887 820 Size: 197 926 1781 901 262 1553 Fragments arranged by size: 1781 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3411 493 Size: 2918 2702 SpeI A'CTAG_T Cuts at: 152 2719 152 Size: 2567 3053 SphI G_CATG'C Cuts at: 1132 2978 1132 Size: 1846 3774 SspI AAT'ATT Cuts at: 5 52 2806 3544 5 Size: 47 2754 738 2081 Fragments arranged by size: 2754 2081 738 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5620 StyI C'CwwG_G Cuts at: 513 1065 2004 2167 2491 3059 513 Size: 552 939 163 324 568 3074 Fragments arranged by size: 3074 939 568 552 324 163 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2231 3647 3664 3817 4002 4447 325 Size: 1255 651 1416 17 153 185 445 1498 Fragments arranged by size: 1498 1416 1255 651 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3866 5578 96 Size: 274 80 33 51 1443 1889 1712 138 Fragments arranged by size: 1889 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5580 5612 5580 Size: 32 5588 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5620 XbaI T'CTAG_A Cuts at: 2956 2956 Size: 5620 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2399 2399 Size: 5620 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5620 XmaI C'CCGG_G Cuts at: 1870 2945 1870 Size: 1075 4545 XmnI GAAnn'nnTTC Cuts at: 3749 3749 Size: 5620 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3428 276 Size: 53 83 186 936 1894 2468 Fragments arranged by size: 2468 1894 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI EcoRV FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI AvrII BaeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoO109I FalI FseI FspAI NaeI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SrfI SwaI