FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KA1454, 1399 aa 1>>>pF1KA1454 1399 - 1399 aa - 1399 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.4756+/-0.00165; mu= -3.8997+/- 0.097 mean_var=499.6640+/-105.471, 0's: 0 Z-trim(108.1): 106 B-trim: 154 in 1/49 Lambda= 0.057377 statistics sampled from 9924 (9974) to 9924 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.306), width: 16 Scan time: 5.410 The best scores are: opt bits E(32554) CCDS53962.1 SCAPER gene_id:49855|Hs108|chr15 (1400) 9144 773.8 0 CCDS53961.1 SCAPER gene_id:49855|Hs108|chr15 (1154) 7435 632.2 2.5e-180 >>CCDS53962.1 SCAPER gene_id:49855|Hs108|chr15 (1400 aa) initn: 9144 init1: 9144 opt: 9144 Z-score: 4114.5 bits: 773.8 E(32554): 0 Smith-Waterman score: 9144; 99.9% identity (99.9% similar) in 1399 aa overlap (1-1399:2-1400) 10 20 30 40 50 pF1KA1 MASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKPKCQTGGKSKRTIQGTH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKPKCQTGGKSKRTIQGTH 10 20 30 40 50 60 60 70 80 90 100 110 pF1KA1 KTTKQSTAVDCKITSSTTGDKHFDKSPTKTRHPRKIDLRARYWAFLFDNLRRAVDEIYVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 KTTKQSTAVDCKITSSTTGDKHFDKSPTKTRHPRKIDLRARYWAFLFDNLRRAVDEIYVT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KA1 CESDQSVVECKEVLMMLDNYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 CESDQSVVECKEVLMMLDNYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGR 130 140 150 160 170 180 180 190 200 210 220 230 pF1KA1 HVIPSPSTDRINVTSNARRSLNFGGSTGTVPAPRLAPTGVSWADKVKAHHTGSTASSEIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 HVIPSPSTDRINVTSNARRSLNFGGSTGTVPAPRLAPTGVSWADKVKAHHTGSTASSEIT 190 200 210 220 230 240 240 250 260 270 280 290 pF1KA1 PAQSCPPMTVQKASRKNERKDAEGWETVQRGRPIRSRSTAVMPKVSLATEATRSKDDSDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 PAQSCPPMTVQKASRKNERKDAEGWETVQRGRPIRSRSTAVMPKVSLATEATRSKDDSDK 250 260 270 280 290 300 300 310 320 330 340 350 pF1KA1 ENVCLLPDESIQKGQFVGDGTSNTIESHPKDSLHSCDHPLAEKTQFTVSTLDDVKNSGSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 ENVCLLPDESIQKGQFVGDGTSNTIESHPKDSLHSCDHPLAEKTQFTVSTLDDVKNSGSI 310 320 330 340 350 360 360 370 380 390 400 410 pF1KA1 RDNYVRTSEISAVHIDTECVSVMLQAGTPPLQVNEEKFPAEKARIENEMDPSDISNSMAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 RDNYVRTSEISAVHIDTECVSVMLQAGTPPLQVNEEKFPAEKARIENEMDPSDISNSMAE 370 380 390 400 410 420 420 430 440 450 460 470 pF1KA1 VLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGS 430 440 450 460 470 480 480 490 500 510 520 530 pF1KA1 VSFCGMSMDWNDVLADYEARESWRQNTSWGDIVEEEPARPPGHGIHMHEKLSSPSRKRTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VSFCGMSMDWNDVLADYEARESWRQNTSWGDIVEEEPARPPGHGIHMHEKLSSPSRKRTI 490 500 510 520 530 540 540 550 560 570 580 590 pF1KA1 AESKKKHEEKQMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 AESKKKHEEKQMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLH 550 560 570 580 590 600 600 610 620 630 640 650 pF1KA1 AEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 AEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQ 610 620 630 640 650 660 660 670 680 690 700 710 pF1KA1 RRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 RRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARER 670 680 690 700 710 720 720 730 740 750 760 770 pF1KA1 ARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHANTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 ARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHANTD 730 740 750 760 770 780 780 790 800 810 820 830 pF1KA1 YAPKLTPYERKKQCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQGRELSDEEVEHLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 YAPKLTPYERKKQCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQGRELSDEEVEHLS 790 800 810 820 830 840 840 850 860 870 880 890 pF1KA1 LKKYIIDIVVESTAPAEALKDGEERQKNKKKAKKIKARMNFRAKEYESLMETKNSGSDSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LKKYIIDIVVESTAPAEALKDGEERQKNKKKAKKIKARMNFRAKEYESLMETKNSGSDSP 850 860 870 880 890 900 900 910 920 930 940 950 pF1KA1 YKAKLQRLAKDLLKQVQVQDSGSWANNKVSALDRTLGEITRILEKENVADQIAFQAAGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 YKAKLQRLAKDLLKQVQVQDSGSWANNKVSALDRTLGEITRILEKENVADQIAFQAAGGL 910 920 930 940 950 960 960 970 980 990 1000 1010 pF1KA1 TALEHILQAVVPATNVNTVLRIPPKSLCNAINVYNLTCNNCSENCSDVLFSNKITFLMDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TALEHILQAVVPATNVNTVLRIPPKSLCNAINVYNLTCNNCSENCSDVLFSNKITFLMDL 970 980 990 1000 1010 1020 1020 1030 1040 1050 1060 1070 pF1KA1 LIHQLTVYVPDENNTILGRNTNKQVFEGLTTGLLKVSAVVLGCLIANRPDGNCQPATPKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LIHQLTVYVPDENNTILGRNTNKQVFEGLTTGLLKVSAVVLGCLIANRPDGNCQPATPKI 1030 1040 1050 1060 1070 1080 1080 1090 1100 1110 1120 1130 pF1KA1 PTQEMKNKTSQGDPFNNRVQDLISYVVNMGLIDKLCACFLSVQGPVDENPKMAIFLQHAA :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 PTQEMKNKPSQGDPFNNRVQDLISYVVNMGLIDKLCACFLSVQGPVDENPKMAIFLQHAA 1090 1100 1110 1120 1130 1140 1140 1150 1160 1170 1180 1190 pF1KA1 GLLHAMCTLCFAVTGRSYSIFDNNRQDPTGLTAALQATDLAGVLHMLYCVLFHGTILDPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 GLLHAMCTLCFAVTGRSYSIFDNNRQDPTGLTAALQATDLAGVLHMLYCVLFHGTILDPS 1150 1160 1170 1180 1190 1200 1200 1210 1220 1230 1240 1250 pF1KA1 TASPKENYTQNTIQVAIQSLRFFNSFAALHLPAFQSIVGAEGLSLAFRHMASSLLGHCSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TASPKENYTQNTIQVAIQSLRFFNSFAALHLPAFQSIVGAEGLSLAFRHMASSLLGHCSQ 1210 1220 1230 1240 1250 1260 1260 1270 1280 1290 1300 1310 pF1KA1 VSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPS 1270 1280 1290 1300 1310 1320 1320 1330 1340 1350 1360 1370 pF1KA1 LIAACYNNHQNKIILEQEMSCVLLATFIQDLAQTPGQAENQPYQPKGKCLGSQDYLELAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LIAACYNNHQNKIILEQEMSCVLLATFIQDLAQTPGQAENQPYQPKGKCLGSQDYLELAN 1330 1340 1350 1360 1370 1380 1380 1390 pF1KA1 RFPQQAWEEARQFFLKKEKK :::::::::::::::::::: CCDS53 RFPQQAWEEARQFFLKKEKK 1390 1400 >>CCDS53961.1 SCAPER gene_id:49855|Hs108|chr15 (1154 aa) initn: 7435 init1: 7435 opt: 7435 Z-score: 3350.9 bits: 632.2 E(32554): 2.5e-180 Smith-Waterman score: 7435; 99.9% identity (99.9% similar) in 1143 aa overlap (257-1399:12-1154) 230 240 250 260 270 280 pF1KA1 AHHTGSTASSEITPAQSCPPMTVQKASRKNERKDAEGWETVQRGRPIRSRSTAVMPKVSL :::::::::::::::::::::::::::::: CCDS53 MKTKYIFCNITERKDAEGWETVQRGRPIRSRSTAVMPKVSL 10 20 30 40 290 300 310 320 330 340 pF1KA1 ATEATRSKDDSDKENVCLLPDESIQKGQFVGDGTSNTIESHPKDSLHSCDHPLAEKTQFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 ATEATRSKDDSDKENVCLLPDESIQKGQFVGDGTSNTIESHPKDSLHSCDHPLAEKTQFT 50 60 70 80 90 100 350 360 370 380 390 400 pF1KA1 VSTLDDVKNSGSIRDNYVRTSEISAVHIDTECVSVMLQAGTPPLQVNEEKFPAEKARIEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VSTLDDVKNSGSIRDNYVRTSEISAVHIDTECVSVMLQAGTPPLQVNEEKFPAEKARIEN 110 120 130 140 150 160 410 420 430 440 450 460 pF1KA1 EMDPSDISNSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 EMDPSDISNSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETD 170 180 190 200 210 220 470 480 490 500 510 520 pF1KA1 NDSDFSASMGSGSVSFCGMSMDWNDVLADYEARESWRQNTSWGDIVEEEPARPPGHGIHM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 NDSDFSASMGSGSVSFCGMSMDWNDVLADYEARESWRQNTSWGDIVEEEPARPPGHGIHM 230 240 250 260 270 280 530 540 550 560 570 580 pF1KA1 HEKLSSPSRKRTIAESKKKHEEKQMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 HEKLSSPSRKRTIAESKKKHEEKQMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELL 290 300 310 320 330 340 590 600 610 620 630 640 pF1KA1 DQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 DQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKE 350 360 370 380 390 400 650 660 670 680 690 700 pF1KA1 YEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 YEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQ 410 420 430 440 450 460 710 720 730 740 750 760 pF1KA1 EKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 EKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEK 470 480 490 500 510 520 770 780 790 800 810 820 pF1KA1 AAELSSGRHANTDYAPKLTPYERKKQCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 AAELSSGRHANTDYAPKLTPYERKKQCSLCNVLISSEVYLFSHVKGRKHQQAVRENTSIQ 530 540 550 560 570 580 830 840 850 860 870 880 pF1KA1 GRELSDEEVEHLSLKKYIIDIVVESTAPAEALKDGEERQKNKKKAKKIKARMNFRAKEYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 GRELSDEEVEHLSLKKYIIDIVVESTAPAEALKDGEERQKNKKKAKKIKARMNFRAKEYE 590 600 610 620 630 640 890 900 910 920 930 940 pF1KA1 SLMETKNSGSDSPYKAKLQRLAKDLLKQVQVQDSGSWANNKVSALDRTLGEITRILEKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 SLMETKNSGSDSPYKAKLQRLAKDLLKQVQVQDSGSWANNKVSALDRTLGEITRILEKEN 650 660 670 680 690 700 950 960 970 980 990 1000 pF1KA1 VADQIAFQAAGGLTALEHILQAVVPATNVNTVLRIPPKSLCNAINVYNLTCNNCSENCSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VADQIAFQAAGGLTALEHILQAVVPATNVNTVLRIPPKSLCNAINVYNLTCNNCSENCSD 710 720 730 740 750 760 1010 1020 1030 1040 1050 1060 pF1KA1 VLFSNKITFLMDLLIHQLTVYVPDENNTILGRNTNKQVFEGLTTGLLKVSAVVLGCLIAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VLFSNKITFLMDLLIHQLTVYVPDENNTILGRNTNKQVFEGLTTGLLKVSAVVLGCLIAN 770 780 790 800 810 820 1070 1080 1090 1100 1110 1120 pF1KA1 RPDGNCQPATPKIPTQEMKNKTSQGDPFNNRVQDLISYVVNMGLIDKLCACFLSVQGPVD ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: CCDS53 RPDGNCQPATPKIPTQEMKNKPSQGDPFNNRVQDLISYVVNMGLIDKLCACFLSVQGPVD 830 840 850 860 870 880 1130 1140 1150 1160 1170 1180 pF1KA1 ENPKMAIFLQHAAGLLHAMCTLCFAVTGRSYSIFDNNRQDPTGLTAALQATDLAGVLHML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 ENPKMAIFLQHAAGLLHAMCTLCFAVTGRSYSIFDNNRQDPTGLTAALQATDLAGVLHML 890 900 910 920 930 940 1190 1200 1210 1220 1230 1240 pF1KA1 YCVLFHGTILDPSTASPKENYTQNTIQVAIQSLRFFNSFAALHLPAFQSIVGAEGLSLAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 YCVLFHGTILDPSTASPKENYTQNTIQVAIQSLRFFNSFAALHLPAFQSIVGAEGLSLAF 950 960 970 980 990 1000 1250 1260 1270 1280 1290 1300 pF1KA1 RHMASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 RHMASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQY 1010 1020 1030 1040 1050 1060 1310 1320 1330 1340 1350 1360 pF1KA1 FSDPRLIKVLFPSLIAACYNNHQNKIILEQEMSCVLLATFIQDLAQTPGQAENQPYQPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 FSDPRLIKVLFPSLIAACYNNHQNKIILEQEMSCVLLATFIQDLAQTPGQAENQPYQPKG 1070 1080 1090 1100 1110 1120 1370 1380 1390 pF1KA1 KCLGSQDYLELANRFPQQAWEEARQFFLKKEKK ::::::::::::::::::::::::::::::::: CCDS53 KCLGSQDYLELANRFPQQAWEEARQFFLKKEKK 1130 1140 1150 1399 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 20:04:52 2016 done: Thu Nov 3 20:04:53 2016 Total Scan time: 5.410 Total Display time: 0.110 Function used was FASTA [36.3.4 Apr, 2011]