(Linear) (Six-base) MAPSORT of: KIAA0847.seq Check: 2632 from: 1 to: 3732 KIAA0847.orf With 182 enzymes: SgfI * July 18, 2007 13:35 .. AatII G_ACGT'C Cuts at: 0 530 3732 Size: 530 3202 AccI GT'mk_AC Cuts at: 0 366 3732 Size: 366 3366 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 166 1226 1666 1769 1871 2024 2068 2179 Size: 166 1060 440 103 102 153 44 111 Cuts at: 2179 2351 2537 3128 3732 Size: 172 186 591 604 Fragments arranged by size: 1060 604 591 440 186 172 166 153 111 103 102 44 AflIII A'CryG_T Cuts at: 0 463 641 2219 2583 3732 Size: 463 178 1578 364 1149 Fragments arranged by size: 1578 1149 463 364 178 AhdI GACnn_n'nnGTC Cuts at: 0 627 3732 Size: 627 3105 AlwNI CAG_nnn'CTG Cuts at: 0 1387 2887 3732 Size: 1387 1500 845 Fragments arranged by size: 1500 1387 845 ApoI r'AATT_y Cuts at: 0 101 760 1187 2305 2558 3155 3338 3732 Size: 101 659 427 1118 253 597 183 394 Fragments arranged by size: 1118 659 597 427 394 253 183 101 AvaI C'yCGr_G Cuts at: 0 326 539 3732 Size: 326 213 3193 Fragments arranged by size: 3193 326 213 AvrII C'CTAG_G Cuts at: 0 3291 3732 Size: 3291 441 BamHI G'GATC_C Cuts at: 0 3652 3732 Size: 3652 80 BanI G'GyrC_C Cuts at: 0 2499 2776 3732 Size: 2499 277 956 Fragments arranged by size: 2499 956 277 BanII G_rGCy'C Cuts at: 0 1624 2099 3732 Size: 1624 475 1633 Fragments arranged by size: 1633 1624 475 BbsI GAAGACnn'nnnn_ Cuts at: 0 618 901 1231 2666 3732 Size: 618 283 330 1435 1066 Fragments arranged by size: 1435 1066 618 330 283 BclI T'GATC_A Cuts at: 0 1818 2280 3732 Size: 1818 462 1452 Fragments arranged by size: 1818 1452 462 BfrBI ATG'CAT Cuts at: 0 577 3732 Size: 577 3155 BglII A'GATC_T Cuts at: 0 306 2079 2402 3732 Size: 306 1773 323 1330 Fragments arranged by size: 1773 1330 323 306 BlpI GC'TnA_GC Cuts at: 0 1054 3732 Size: 1054 2678 Bme1580I G_kGCm'C Cuts at: 0 2781 3732 Size: 2781 951 BmgBI CAC'GTC Cuts at: 0 3488 3732 Size: 3488 244 BmrI ACTGGGnnnn_n' Cuts at: 0 897 3132 3446 3732 Size: 897 2235 314 286 Fragments arranged by size: 2235 897 314 286 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2424 2874 3392 3732 Size: 2424 450 518 340 Fragments arranged by size: 2424 518 450 340 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 696 740 1025 1390 1432 1777 1786 1900 Size: 696 44 285 365 42 345 9 114 Cuts at: 1900 1943 2864 3278 3582 3732 Size: 43 921 414 304 150 Fragments arranged by size: 921 696 414 365 345 304 285 150 114 44 43 42 9 Bpu10I CC'TnA_GC Cuts at: 0 1571 1618 3732 Size: 1571 47 2114 Fragments arranged by size: 2114 1571 47 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1420 1763 2237 2970 3732 Size: 1420 343 474 733 762 Fragments arranged by size: 1420 762 733 474 343 BsaI GGTCTCn'nnnn_ Cuts at: 0 1396 2675 3732 Size: 1396 1279 1057 Fragments arranged by size: 1396 1279 1057 BsaHI Gr'CG_yC Cuts at: 0 527 1951 3732 Size: 527 1424 1781 Fragments arranged by size: 1781 1424 527 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 2411 2441 3307 3337 3438 3468 3732 Size: 2411 30 866 30 101 30 264 Fragments arranged by size: 2411 866 264 101 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 26 1225 1756 2397 2893 3025 3061 3389 Size: 26 1199 531 641 496 132 36 328 Cuts at: 3389 3452 3549 3585 3732 Size: 63 97 36 147 Fragments arranged by size: 1199 641 531 496 328 147 132 97 63 36 36 26 BseYI C'CCAG_C Cuts at: 0 360 3574 3631 3732 Size: 360 3214 57 101 Fragments arranged by size: 3214 360 101 57 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1457 3732 Size: 1457 2275 BsiHKAI G_wGCw'C Cuts at: 0 1624 3059 3373 3732 Size: 1624 1435 314 359 Fragments arranged by size: 1624 1435 359 314 BsmI GAATG_Cn' Cuts at: 0 392 3732 Size: 392 3340 BsmBI CGTCTCn'nnnn_ Cuts at: 0 3215 3732 Size: 3215 517 Bsp1286I G_dGCh'C Cuts at: 0 1624 2099 2781 3059 3373 3732 Size: 1624 475 682 278 314 359 Fragments arranged by size: 1624 682 475 359 314 278 BspHI T'CATG_A Cuts at: 0 2214 2651 3732 Size: 2214 437 1081 Fragments arranged by size: 2214 1081 437 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 541 1414 3732 Size: 541 873 2318 Fragments arranged by size: 2318 873 541 BsrBI CCG'CTC Cuts at: 0 1280 3732 Size: 1280 2452 BsrDI GCAATG_nn' Cuts at: 0 1602 3621 3732 Size: 1602 2019 111 Fragments arranged by size: 2019 1602 111 BssSI C'ACGA_G Cuts at: 0 3249 3732 Size: 3249 483 BstAPI GCAn_nnn'nTGC Cuts at: 0 1861 3732 Size: 1861 1871 BstEII G'GTnAC_C Cuts at: 0 1262 3732 Size: 1262 2470 BstXI CCAn_nnnn'nTGG Cuts at: 0 1234 3173 3732 Size: 1234 1939 559 Fragments arranged by size: 1939 1234 559 BstYI r'GATC_y Cuts at: 0 306 1108 2079 2402 3352 3394 3586 3652 Size: 306 802 971 323 950 42 192 66 Cuts at: 3652 3732 Size: 80 Fragments arranged by size: 971 950 802 323 306 192 80 66 42 Bsu36I CC'TnA_GG Cuts at: 0 1839 3732 Size: 1839 1893 BtgI C'CryG_G Cuts at: 0 1221 2090 3732 Size: 1221 869 1642 Fragments arranged by size: 1642 1221 869 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 1073 3732 Size: 1073 2659 ClaI AT'CG_AT Cuts at: 0 261 3732 Size: 261 3471 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 501 536 3732 Size: 501 35 3196 Fragments arranged by size: 3196 501 35 DraI TTT'AAA Cuts at: 0 1826 3732 Size: 1826 1906 DrdI GACnn_nn'nnGTC Cuts at: 0 1124 3732 Size: 1124 2608 EaeI y'GGCC_r Cuts at: 0 1224 3226 3732 Size: 1224 2002 506 Fragments arranged by size: 2002 1224 506 EarI CTCTTCn'nnn_ Cuts at: 0 792 1145 1202 2327 3697 3732 Size: 792 353 57 1125 1370 35 Fragments arranged by size: 1370 1125 792 353 57 35 EcoICRI GAG'CTC Cuts at: 0 1622 3732 Size: 1622 2110 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 166 696 740 1025 1226 1390 1432 1666 Size: 166 530 44 285 201 164 42 234 Cuts at: 1666 1769 1777 1786 1871 1900 1943 2024 2068 Size: 103 8 9 85 29 43 81 44 Cuts at: 2068 2179 2351 2537 2864 3128 3278 3582 3732 Size: 111 172 186 327 264 150 304 150 Fragments arranged by size: 530 327 304 285 264 234 201 186 172 166 164 150 150 111 103 85 81 44 44 43 42 29 9 8 EcoNI CCTnn'n_nnAGG Cuts at: 0 2168 3597 3600 3732 Size: 2168 1429 3 132 Fragments arranged by size: 2168 1429 132 3 EcoO109I rG'GnC_Cy Cuts at: 0 1677 1801 1870 1984 3605 3732 Size: 1677 124 69 114 1621 127 Fragments arranged by size: 1677 1621 127 124 114 69 EcoRI G'AATT_C Cuts at: 0 760 3732 Size: 760 2972 EcoRV GAT'ATC Cuts at: 0 27 2633 3732 Size: 27 2606 1099 Fragments arranged by size: 2606 1099 27 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 1549 2005 3732 Size: 1549 456 1727 Fragments arranged by size: 1727 1549 456 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 243 275 613 645 769 801 2394 2426 Size: 243 32 338 32 124 32 1593 32 Cuts at: 2426 2708 2740 3272 3304 3307 3339 3732 Size: 282 32 532 32 3 32 393 Fragments arranged by size: 1593 532 393 338 282 243 124 32 32 32 32 32 32 32 3 HincII GTy'rAC Cuts at: 0 1614 2036 3180 3732 Size: 1614 422 1144 552 Fragments arranged by size: 1614 1144 552 422 HindIII A'AGCT_T Cuts at: 0 1180 2046 2533 2938 3732 Size: 1180 866 487 405 794 Fragments arranged by size: 1180 866 794 487 405 HpaI GTT'AAC Cuts at: 0 1614 3732 Size: 1614 2118 MfeI C'AATT_G Cuts at: 0 974 3732 Size: 974 2758 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 18 274 2526 3332 3732 Size: 18 256 2252 806 400 Fragments arranged by size: 2252 806 400 256 18 MscI TGG'CCA Cuts at: 0 1226 3732 Size: 1226 2506 MslI CAynn'nnrTG Cuts at: 0 646 1520 3732 Size: 646 874 2212 Fragments arranged by size: 2212 874 646 MspA1I CmG'CkG Cuts at: 0 669 3106 3732 Size: 669 2437 626 Fragments arranged by size: 2437 669 626 NcoI C'CATG_G Cuts at: 0 1221 2090 3732 Size: 1221 869 1642 Fragments arranged by size: 1642 1221 869 NsiI A_TGCA'T Cuts at: 0 579 3732 Size: 579 3153 NspI r_CATG'y Cuts at: 0 123 467 483 645 2223 2587 3732 Size: 123 344 16 162 1578 364 1145 Fragments arranged by size: 1578 1145 364 344 162 123 16 PasI CC'CwG_GG Cuts at: 0 2320 3732 Size: 2320 1412 PciI A'CATG_T Cuts at: 0 463 641 2219 2583 3732 Size: 463 178 1578 364 1149 Fragments arranged by size: 1578 1149 463 364 178 PflMI CCAn_nnn'nTGG Cuts at: 0 1258 1652 3732 Size: 1258 394 2080 Fragments arranged by size: 2080 1258 394 PfoI T'CCnGG_A Cuts at: 0 1763 3390 3598 3732 Size: 1763 1627 208 134 Fragments arranged by size: 1763 1627 208 134 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 551 583 3732 Size: 551 32 3149 Fragments arranged by size: 3149 551 32 PpuMI rG'GwC_Cy Cuts at: 0 1677 1801 1870 1984 3605 3732 Size: 1677 124 69 114 1621 127 Fragments arranged by size: 1677 1621 127 124 114 69 PspXI vC'TCGA_Gb Cuts at: 0 539 3732 Size: 539 3193 PstI C_TGCA'G Cuts at: 0 1866 3732 Size: 1866 1866 PvuII CAG'CTG Cuts at: 0 669 3106 3732 Size: 669 2437 626 Fragments arranged by size: 2437 669 626 SacI G_AGCT'C Cuts at: 0 1624 3732 Size: 1624 2108 ScaI AGT'ACT Cuts at: 0 1754 3732 Size: 1754 1978 SfcI C'TryA_G Cuts at: 0 1706 1862 3732 Size: 1706 156 1870 Fragments arranged by size: 1870 1706 156 SmlI C'TyrA_G Cuts at: 0 539 1399 1778 2252 2985 3732 Size: 539 860 379 474 733 747 Fragments arranged by size: 860 747 733 539 474 379 StuI AGG'CCT Cuts at: 0 3255 3732 Size: 3255 477 StyI C'CwwG_G Cuts at: 0 113 1221 1257 1804 2090 2119 2973 3160 Size: 113 1108 36 547 286 29 854 187 Cuts at: 3160 3291 3696 3732 Size: 131 405 36 Fragments arranged by size: 1108 854 547 405 286 187 131 113 36 36 29 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1644 3141 3261 3435 3732 Size: 1644 1497 120 174 297 Fragments arranged by size: 1644 1497 297 174 120 TatI w'GTAC_w Cuts at: 0 460 1752 3732 Size: 460 1292 1980 Fragments arranged by size: 1980 1292 460 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 32 64 3438 3470 3732 Size: 32 32 3374 32 262 Fragments arranged by size: 3374 262 32 32 32 Tth111I GACn'n_nGTC Cuts at: 0 2932 3732 Size: 2932 800 XbaI T'CTAG_A Cuts at: 0 774 3142 3732 Size: 774 2368 590 Fragments arranged by size: 2368 774 590 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 357 1962 3732 Size: 357 1605 1770 Fragments arranged by size: 1770 1605 357 XhoI C'TCGA_G Cuts at: 0 539 3732 Size: 539 3193 XmnI GAAnn'nnTTC Cuts at: 0 392 1451 1532 1731 1754 2747 3732 Size: 392 1059 81 199 23 993 985 Fragments arranged by size: 1059 993 985 392 199 81 23 ZraI GAC'GTC Cuts at: 0 528 3732 Size: 528 3204 Enzymes that do cut: AatII AccI AcuI AflIII AhdI AlwNI ApoI AvaI AvrII BamHI BanI BanII BbsI BclI BfrBI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaHI BsaXI BseRI BseYI BsgI BsiHKAI BsmI BsmBI Bsp1286I BspHI BspMI BsrBI BsrDI BssSI BstAPI BstEII BstXI BstYI Bsu36I BtgI BtgZI ClaI CspCI DraI DrdI EaeI EarI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI Hin4I HincII HindIII HpaI MfeI MmeI MscI MslI MspA1I NcoI NsiI NspI PasI PciI PflMI PfoI PpiI PpuMI PspXI PstI PvuII SacI ScaI SfcI SmlI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmnI ZraI Enzymes that do not cut: AarI Acc65I AclI AfeI AflII AgeI AleI AlfI AloI ApaI ApaLI AscI AseI AsiSI BaeI BbeI BbvCI BcgI BciVI BglI BmtI BsaAI BsaBI BsaWI BsiEI BsiWI BspEI BsrFI BsrGI BssHII BstBI BstZ17I BtsI DraIII EagI EciI FseI FspI FspAI HaeII KasI KpnI MluI NaeI NarI NdeI NgoMIV NheI NotI NruI PacI PmeI PmlI PshAI PsiI PspOMI PsrI PvuI RsrII SacII SalI SanDI SapI SbfI SexAI SfiI SfoI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI SspI SwaI XmaI