(Circular) (Six-base) MAPSORT of: pFN21AB7013.seq Check: 3180 from: 1 to: 7963 pFN21AB7013 7963 bp With 182 enzymes: SgfI * January 16, 2009 15:25 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2321 3710 5104 2321 Size: 1389 1394 5180 Fragments arranged by size: 5180 1394 1389 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 5773 278 Size: 53 83 186 936 4237 2468 Fragments arranged by size: 4237 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2080 2937 5306 1937 Size: 143 857 2369 4594 Fragments arranged by size: 4594 2369 857 143 Acc65I G'GTAC_C Cuts at: 4055 5284 4055 Size: 1229 6734 AclI AA'CG_TT Cuts at: 1563 6090 6463 1563 Size: 4527 373 3063 Fragments arranged by size: 4527 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3212 3394 6026 7410 7678 1632 Size: 1580 182 2632 1384 268 1917 Fragments arranged by size: 2632 1917 1580 1384 268 182 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 7766 AflIII A'CryG_T Cuts at: 1203 2083 3753 5219 6862 7839 1203 Size: 880 1670 1466 1643 977 1327 Fragments arranged by size: 1670 1643 1466 1327 977 880 AgeI A'CCGG_T Cuts at: 6794 6794 Size: 7963 AhdI GACnn_n'nnGTC Cuts at: 6692 6692 Size: 7963 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 7963 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 7963 AlwNI CAG_nnn'CTG Cuts at: 2669 3371 4439 5003 5706 7278 2669 Size: 702 1068 564 703 1572 3354 Fragments arranged by size: 3354 1572 1068 703 702 564 ApaI G_GGCC'C Cuts at: 4013 4540 4013 Size: 527 7436 ApaLI G'TGCA_C Cuts at: 4590 6020 7176 4590 Size: 1430 1156 5377 Fragments arranged by size: 5377 1430 1156 ApoI r'AATT_y Cuts at: 1493 2157 4716 4887 5272 5498 5650 7759 1493 Size: 664 2559 171 385 226 152 2109 1697 Fragments arranged by size: 2559 2109 1697 664 385 226 171 152 AseI AT'TA_AT Cuts at: 160 1032 6517 160 Size: 872 5485 1606 Fragments arranged by size: 5485 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 7963 AvaI C'yCGr_G Cuts at: 1870 1943 3883 5288 1870 Size: 73 1940 1405 4545 Fragments arranged by size: 4545 1940 1405 73 AvrII C'CTAG_G Cuts at: 3877 3877 Size: 7963 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 3638 3671 3638 Size: 33 7930 BamHI G'GATC_C Cuts at: 5293 5660 5293 Size: 367 7596 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2333 3344 3812 3902 4055 Size: 325 217 627 546 1011 468 90 153 Cuts at: 4055 4682 5284 6739 618 Size: 627 602 1455 1842 Fragments arranged by size: 1842 1455 1011 627 627 602 546 468 325 217 153 90 BanII G_rGCy'C Cuts at: 1391 2395 2823 4013 4540 5282 1391 Size: 1004 428 1190 527 742 4072 Fragments arranged by size: 4072 1190 1004 742 527 428 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 3368 3422 928 Size: 971 1469 54 5469 Fragments arranged by size: 5469 1469 971 54 BbvCI CC'TCA_GC Cuts at: 3048 4938 3048 Size: 1890 6073 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2727 2761 6154 6188 1903 Size: 34 790 34 3393 34 3678 Fragments arranged by size: 3678 3393 790 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3453 3666 5855 7065 3453 Size: 213 2189 1210 4351 Fragments arranged by size: 4351 2189 1210 213 BclI T'GATC_A Cuts at: 1548 2314 1548 Size: 766 7197 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3152 4333 6574 Size: 107 122 71 631 605 1480 1181 2241 Cuts at: 6574 136 Size: 1525 Fragments arranged by size: 2241 1525 1480 1181 631 605 122 107 71 BglII A'GATC_T Cuts at: 7958 7958 Size: 7963 BlpI GC'TnA_GC Cuts at: 2579 2817 3372 5380 2579 Size: 238 555 2008 5162 Fragments arranged by size: 5162 2008 555 238 Bme1580I G_kGCm'C Cuts at: 1790 2338 3349 4013 4540 4594 6024 7180 1790 Size: 548 1011 664 527 54 1430 1156 2573 Fragments arranged by size: 2573 1430 1156 1011 664 548 527 54 BmgBI CAC'GTC Cuts at: 1318 3938 1318 Size: 2620 5343 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3344 3473 3962 Size: 416 53 83 399 24 1927 129 489 Cuts at: 3962 4889 5694 6652 442 Size: 927 805 958 1753 Fragments arranged by size: 1927 1753 958 927 805 489 416 399 129 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 7963 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2667 2964 3993 4056 5216 6623 1239 Size: 1428 297 1029 63 1160 1407 2579 Fragments arranged by size: 2579 1428 1407 1160 1029 297 63 Bpu10I CC'TnA_GC Cuts at: 2562 3048 4938 2562 Size: 486 1890 5587 Fragments arranged by size: 5587 1890 486 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3324 5037 5114 6088 6953 7251 3324 Size: 1713 77 974 865 298 4036 Fragments arranged by size: 4036 1713 974 865 298 77 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3455 4275 4304 4811 6626 882 Size: 617 1956 820 29 507 1815 2219 Fragments arranged by size: 2219 1956 1815 820 617 507 29 BsaAI yAC'GTr Cuts at: 493 1204 2084 5754 493 Size: 711 880 3670 2702 Fragments arranged by size: 3670 2702 880 711 BsaBI GATnn'nnATC Cuts at: 7957 7957 Size: 7963 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 4254 5770 6152 6787 Size: 53 83 186 936 2721 1516 382 635 Cuts at: 6787 275 Size: 1451 Fragments arranged by size: 2721 1516 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 6396 6794 7068 7215 7626 6396 Size: 398 274 147 411 6733 Fragments arranged by size: 6733 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 7738 Fragments arranged by size: 7738 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 7963 BseYI C'CCAG_C Cuts at: 2473 2717 3134 3313 4533 7166 7662 2473 Size: 244 417 179 1220 2633 496 2774 Fragments arranged by size: 2774 2633 1220 496 417 244 179 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 4566 4833 1163 Size: 573 2830 267 4293 Fragments arranged by size: 4293 2830 573 267 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 5413 6174 7202 1540 Size: 275 186 3412 761 1028 2301 Fragments arranged by size: 3412 2301 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 4594 6024 6109 7180 4594 Size: 1430 85 1071 5377 Fragments arranged by size: 5377 1430 1071 85 BsmI GAATG_Cn' Cuts at: 3695 3750 4914 5474 5567 3695 Size: 55 1164 560 93 6091 Fragments arranged by size: 6091 1164 560 93 55 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2338 2395 2823 3349 4013 4540 4594 Size: 399 548 57 428 526 664 527 54 Cuts at: 4594 5282 6024 6109 7180 1391 Size: 688 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 688 664 548 527 526 428 399 85 57 54 BspEI T'CCGG_A Cuts at: 7626 7626 Size: 7963 BspHI T'CATG_A Cuts at: 2422 5852 7582 2422 Size: 3430 1730 2803 Fragments arranged by size: 3430 2803 1730 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2321 3138 3437 3710 3807 5104 5318 844 Size: 1477 817 299 273 97 1297 214 3489 Fragments arranged by size: 3489 1477 1297 817 299 273 214 97 BsrBI CCG'CTC Cuts at: 1394 1823 5850 1394 Size: 429 4027 3507 Fragments arranged by size: 4027 3507 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2538 2595 3474 3714 3952 4275 4647 Size: 1183 1290 57 879 240 238 323 372 Cuts at: 4647 4833 6458 6632 65 Size: 186 1625 174 1396 Fragments arranged by size: 1625 1396 1290 1183 879 372 323 240 238 186 174 57 BsrFI r'CCGG_y Cuts at: 1700 1810 3809 6607 6794 1700 Size: 110 1999 2798 187 2869 Fragments arranged by size: 2869 2798 1999 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 7963 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 7963 BssSI C'ACGA_G Cuts at: 2041 6023 7035 2041 Size: 3982 1012 2969 Fragments arranged by size: 3982 2969 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 7963 BstBI TT'CG_AA Cuts at: 6767 6767 Size: 7963 BstEII G'GTnAC_C Cuts at: 1184 3508 1184 Size: 2324 5639 BstXI CCAn_nnnn'nTGG Cuts at: 3142 4225 3142 Size: 1083 6880 BstYI r'GATC_y Cuts at: 1972 5059 5293 5660 6045 6062 7514 7600 7612 Size: 3087 234 367 385 17 1452 86 12 Cuts at: 7612 7958 1972 Size: 346 1977 Fragments arranged by size: 3087 1977 1452 385 367 346 234 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2586 4710 513 Size: 552 939 582 2124 3766 Fragments arranged by size: 3766 2124 939 582 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 4055 487 Size: 683 56 2829 4395 Fragments arranged by size: 4395 2829 683 56 BtsI GCAGTG_nn' Cuts at: 5163 5479 6273 6293 5163 Size: 316 794 20 6833 Fragments arranged by size: 6833 794 316 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 7963 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2111 2146 529 Size: 35 1547 35 6346 Fragments arranged by size: 6346 1547 35 35 DraI TTT'AAA Cuts at: 2439 5267 2439 Size: 2828 5135 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4499 6970 809 Size: 507 3183 2471 1802 Fragments arranged by size: 3183 2471 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2589 3144 5190 Size: 54 1425 50 275 18 759 555 2046 Cuts at: 5190 5410 6299 7928 8 Size: 220 889 1629 43 Fragments arranged by size: 2046 1629 1425 889 759 555 275 220 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 5410 1537 Size: 275 3598 4090 Fragments arranged by size: 4090 3598 275 EarI CTCTTCn'nnn_ Cuts at: 1353 5123 5893 1353 Size: 3770 770 3423 Fragments arranged by size: 3770 3423 770 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 6550 6924 7070 387 Size: 1064 138 4961 374 146 1280 Fragments arranged by size: 4961 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2667 2964 3212 3394 3993 4056 5216 Size: 393 1035 297 248 182 599 63 1160 Cuts at: 5216 6026 6623 7410 7678 1239 Size: 810 597 787 268 1524 Fragments arranged by size: 1524 1160 1035 810 787 599 597 393 297 268 248 182 63 EcoO109I rG'GnC_Cy Cuts at: 2067 3676 4537 2067 Size: 1609 861 5493 Fragments arranged by size: 5493 1609 861 EcoRI G'AATT_C Cuts at: 2157 4887 5272 5650 2157 Size: 2730 385 378 4470 Fragments arranged by size: 4470 2730 385 378 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2450 2450 Size: 7963 FspI TGC'GCA Cuts at: 6469 6469 Size: 7963 HaeII r_GCGC'y Cuts at: 1678 2144 7110 1678 Size: 466 4966 2531 Fragments arranged by size: 4966 2531 466 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3553 3585 5051 5083 6604 Size: 32 135 32 1981 32 1466 32 1521 Cuts at: 6604 6636 6678 6710 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1981 1521 1466 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3426 3712 5307 5553 669 Size: 988 281 1488 286 1595 246 3079 Fragments arranged by size: 3079 1595 1488 988 286 281 246 HindIII A'AGCT_T Cuts at: 748 2295 4402 748 Size: 1547 2107 4309 Fragments arranged by size: 4309 2107 1547 HpaI GTT'AAC Cuts at: 5553 5553 Size: 7963 KpnI G_GTAC'C Cuts at: 4059 5288 4059 Size: 1229 6734 MfeI C'AATT_G Cuts at: 2556 2757 4071 4755 5562 2556 Size: 201 1314 684 807 4957 Fragments arranged by size: 4957 1314 807 684 201 MluI A'CGCG_T Cuts at: 7839 7839 Size: 7963 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2161 2432 3195 4947 7077 7261 1305 Size: 856 271 763 1752 2130 184 2007 Fragments arranged by size: 2130 2007 1752 856 763 271 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2591 3146 10 Size: 54 1425 343 759 555 4827 Fragments arranged by size: 4827 1425 759 555 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 4460 4634 5192 5921 6280 6439 518 Size: 648 3294 174 558 729 359 159 2042 Fragments arranged by size: 3294 2042 729 648 558 359 174 159 MspA1I CmG'CkG Cuts at: 1606 2666 4145 4475 4697 5379 6056 7204 7449 Size: 1060 1479 330 222 682 677 1148 245 Cuts at: 7449 1606 Size: 2120 Fragments arranged by size: 2120 1479 1148 1060 682 677 330 245 222 NaeI GCC'GGC Cuts at: 3811 3811 Size: 7963 NcoI C'CATG_G Cuts at: 513 1065 2004 2586 4710 513 Size: 552 939 582 2124 3766 Fragments arranged by size: 3766 2124 939 582 552 NdeI CA'TA_TG Cuts at: 387 4954 387 Size: 4567 3396 NgoMIV G'CCGG_C Cuts at: 3809 3809 Size: 7963 NheI G'CTAG_C Cuts at: 1052 1052 Size: 7963 NotI GC'GGCC_GC Cuts at: 5410 5410 Size: 7963 NspI r_CATG'y Cuts at: 1132 1229 3757 4498 5086 5223 5321 6866 1132 Size: 97 2528 741 588 137 98 1545 2229 Fragments arranged by size: 2528 2229 1545 741 588 137 98 97 PasI CC'CwG_GG Cuts at: 1348 3925 1348 Size: 2577 5386 PciI A'CATG_T Cuts at: 3753 5219 6862 3753 Size: 1466 1643 4854 Fragments arranged by size: 4854 1643 1466 PflMI CCAn_nnn'nTGG Cuts at: 1108 4802 1108 Size: 3694 4269 PmeI GTTT'AAAC Cuts at: 5267 5267 Size: 7963 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4511 4543 6032 6064 7545 7577 4511 Size: 32 1489 32 1481 32 4897 Fragments arranged by size: 4897 1489 1481 32 32 32 PpuMI rG'GwC_Cy Cuts at: 2067 2067 Size: 7963 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 7963 PsiI TTA'TAA Cuts at: 2607 3855 5533 2607 Size: 1248 1678 5037 Fragments arranged by size: 5037 1678 1248 PspOMI G'GGCC_C Cuts at: 4009 4536 4009 Size: 527 7436 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 2098 2130 2098 Size: 32 7931 PstI C_TGCA'G Cuts at: 830 2734 2788 3622 5158 5315 830 Size: 1904 54 834 1536 157 3478 Fragments arranged by size: 3478 1904 1536 834 157 54 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 7963 PvuII CAG'CTG Cuts at: 2666 4145 4475 4697 2666 Size: 1479 330 222 5932 Fragments arranged by size: 5932 1479 330 222 SalI G'TCGA_C Cuts at: 1936 5305 1936 Size: 3369 4594 SbfI CC_TGCA'GG Cuts at: 5315 5315 Size: 7963 ScaI AGT'ACT Cuts at: 6211 7923 6211 Size: 1712 6251 SexAI A'CCwGG_T Cuts at: 2538 2538 Size: 7963 SfcI C'TryA_G Cuts at: 826 1045 2320 2520 2730 2784 3282 3618 3844 Size: 219 1275 200 210 54 498 336 226 Cuts at: 3844 5154 5311 6446 7127 7318 826 Size: 1310 157 1135 681 191 1471 Fragments arranged by size: 1471 1310 1275 1135 681 498 336 226 219 210 200 191 157 54 SfiI GGCCn_nnn'nGGCC Cuts at: 3152 3152 Size: 7963 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 7963 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 7963 SmaI CCC'GGG Cuts at: 1872 5290 1872 Size: 3418 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3339 5052 5093 6067 6968 7230 Size: 197 926 1396 1713 41 974 901 262 Cuts at: 7230 820 Size: 1553 Fragments arranged by size: 1713 1553 1396 974 926 901 262 197 41 SnaBI TAC'GTA Cuts at: 493 5754 493 Size: 5261 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 7963 SphI G_CATG'C Cuts at: 1132 5086 5321 1132 Size: 3954 235 3774 Fragments arranged by size: 3954 3774 235 SspI AAT'ATT Cuts at: 5 52 3334 5887 5 Size: 47 3282 2553 2081 Fragments arranged by size: 3282 2553 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 7963 StyI C'CwwG_G Cuts at: 513 1065 2004 2344 2586 2823 3877 3906 4710 Size: 552 939 340 242 237 1054 29 804 Cuts at: 4710 5402 513 Size: 692 3074 Fragments arranged by size: 3074 1054 939 804 692 552 340 242 237 29 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2741 3938 4040 4448 4577 4908 5129 Size: 1255 1161 1197 102 408 129 331 221 Cuts at: 5129 5990 6007 6160 6345 6790 325 Size: 861 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1197 1161 861 445 408 331 221 185 153 129 102 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 4147 4167 6209 Size: 274 80 33 51 1443 2170 20 2042 Cuts at: 6209 7921 96 Size: 1712 138 Fragments arranged by size: 2170 2042 1712 1443 274 138 80 51 33 20 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3270 3302 7923 7955 3270 Size: 32 4621 32 3278 Fragments arranged by size: 4621 3278 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 3421 1316 Size: 2105 5858 XbaI T'CTAG_A Cuts at: 5299 5299 Size: 7963 XcmI CCAnnnn_n'nnnnTGG Cuts at: 3520 4840 3520 Size: 1320 6643 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 7963 XmaI C'CCGG_G Cuts at: 1870 5288 1870 Size: 3418 4545 XmnI GAAnn'nnTTC Cuts at: 6092 6092 Size: 7963 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 5771 276 Size: 53 83 186 936 4237 2468 Fragments arranged by size: 4237 2468 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI AvrII BaeI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PsrI PstI PvuI PvuII SalI SbfI ScaI SexAI SfcI SfiI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI BbeI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PspXI RsrII SacI SacII SanDI SapI SfoI SrfI SwaI