Result of FASTA (omim) for
pFN21AB5164
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5164, 427 aa
1>>>pF1KB5164 427 - 427 aa - 427 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1428+/-0.000329; mu= 4.6904+/- 0.020
mean_var=169.0757+/-33.971, 0's: 0 Z-trim(120.7): 49 B-trim: 0 in 0/58
Lambda= 0.098636
statistics sampled from 36186 (36235) to 36186 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.425), width: 16
Scan time: 9.110
The best scores are: opt bits E(85289)
NP_001562 (OMIM: 603734,616532) interferon regulat ( 427) 3028 442.7 8.2e-124
XP_016882256 (OMIM: 603734,616532) PREDICTED: inte ( 427) 3028 442.7 8.2e-124
XP_016882255 (OMIM: 603734,616532) PREDICTED: inte ( 427) 3028 442.7 8.2e-124
NP_001184052 (OMIM: 603734,616532) interferon regu ( 392) 2634 386.7 5.8e-107
XP_006723261 (OMIM: 603734,616532) PREDICTED: inte ( 452) 2343 345.3 1.9e-94
XP_006723260 (OMIM: 603734,616532) PREDICTED: inte ( 452) 2343 345.3 1.9e-94
NP_001184051 (OMIM: 603734,616532) interferon regu ( 452) 2343 345.3 1.9e-94
NP_001184054 (OMIM: 603734,616532) interferon regu ( 281) 2002 296.6 5.2e-80
NP_001184055 (OMIM: 603734,616532) interferon regu ( 281) 2002 296.6 5.2e-80
XP_006723263 (OMIM: 603734,616532) PREDICTED: inte ( 417) 1949 289.2 1.3e-77
NP_001184053 (OMIM: 603734,616532) interferon regu ( 300) 1422 214.1 3.8e-55
XP_006723264 (OMIM: 603734,616532) PREDICTED: inte ( 306) 1317 199.2 1.2e-50
XP_006723265 (OMIM: 603734,616532) PREDICTED: inte ( 306) 1317 199.2 1.2e-50
NP_001184057 (OMIM: 603734,616532) interferon regu ( 154) 688 109.5 6.2e-24
NP_001184056 (OMIM: 603734,616532) interferon regu ( 154) 688 109.5 6.2e-24
NP_002154 (OMIM: 601565,614893,614894) interferon ( 426) 476 79.6 1.7e-14
XP_011514466 (OMIM: 607218,612245,612251) PREDICTE ( 488) 399 68.7 3.8e-11
XP_011514465 (OMIM: 607218,612245,612251) PREDICTE ( 488) 399 68.7 3.8e-11
XP_011514464 (OMIM: 607218,612245,612251) PREDICTE ( 488) 399 68.7 3.8e-11
NP_001092097 (OMIM: 607218,612245,612251) interfer ( 498) 393 67.8 6.9e-11
NP_001092100 (OMIM: 607218,612245,612251) interfer ( 498) 393 67.8 6.9e-11
NP_116032 (OMIM: 607218,612245,612251) interferon ( 498) 393 67.8 6.9e-11
XP_011514463 (OMIM: 607218,612245,612251) PREDICTE ( 504) 388 67.1 1.1e-10
XP_011514461 (OMIM: 607218,612245,612251) PREDICTE ( 514) 383 66.4 1.9e-10
XP_011514462 (OMIM: 607218,612245,612251) PREDICTE ( 514) 383 66.4 1.9e-10
XP_006716037 (OMIM: 607218,612245,612251) PREDICTE ( 514) 383 66.4 1.9e-10
XP_005250374 (OMIM: 607218,612245,612251) PREDICTE ( 514) 383 66.4 1.9e-10
XP_011514460 (OMIM: 607218,612245,612251) PREDICTE ( 514) 383 66.4 1.9e-10
NP_001092099 (OMIM: 607218,612245,612251) interfer ( 514) 383 66.4 1.9e-10
NP_006138 (OMIM: 119300,119500,607199,608864) inte ( 467) 373 65.0 4.7e-10
XP_006715153 (OMIM: 601900,611724) PREDICTED: inte ( 415) 372 64.8 4.8e-10
NP_001229381 (OMIM: 607218,612245,612251) interfer ( 412) 352 61.9 3.4e-09
NP_001182215 (OMIM: 601900,611724) interferon regu ( 450) 352 62.0 3.6e-09
NP_002451 (OMIM: 601900,611724) interferon regulat ( 451) 347 61.3 6e-09
NP_006075 (OMIM: 147574) interferon regulatory fac ( 393) 339 60.1 1.2e-08
XP_016873163 (OMIM: 605047,616345) PREDICTED: inte ( 210) 306 55.2 1.8e-07
NP_001193625 (OMIM: 119300,119500,607199,608864) i ( 372) 291 53.2 1.3e-06
NP_002190 (OMIM: 147576) interferon regulatory fac ( 349) 277 51.2 4.9e-06
XP_011541680 (OMIM: 147575,211980,613659) PREDICTE ( 284) 263 49.2 1.6e-05
NP_002189 (OMIM: 147575,211980,613659) interferon ( 325) 263 49.2 1.8e-05
XP_016878688 (OMIM: 601565,614893,614894) PREDICTE ( 222) 216 42.4 0.0014
NP_004020 (OMIM: 605047,616345) interferon regulat ( 474) 211 41.9 0.0042
XP_005252966 (OMIM: 605047,616345) PREDICTED: inte ( 487) 211 41.9 0.0043
XP_011518368 (OMIM: 605047,616345) PREDICTED: inte ( 502) 211 41.9 0.0044
NP_001563 (OMIM: 605047,616345) interferon regulat ( 503) 211 41.9 0.0044
XP_005252964 (OMIM: 605047,616345) PREDICTED: inte ( 515) 211 41.9 0.0045
NP_004022 (OMIM: 605047,616345) interferon regulat ( 516) 211 41.9 0.0045
XP_005252963 (OMIM: 605047,616345) PREDICTED: inte ( 516) 211 41.9 0.0045
>>NP_001562 (OMIM: 603734,616532) interferon regulatory (427 aa)
initn: 3028 init1: 3028 opt: 3028 Z-score: 2343.8 bits: 442.7 E(85289): 8.2e-124
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
370 380 390 400 410 420
pF1KB5 FQGPGES
:::::::
NP_001 FQGPGES
>>XP_016882256 (OMIM: 603734,616532) PREDICTED: interfer (427 aa)
initn: 3028 init1: 3028 opt: 3028 Z-score: 2343.8 bits: 442.7 E(85289): 8.2e-124
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
370 380 390 400 410 420
pF1KB5 FQGPGES
:::::::
XP_016 FQGPGES
>>XP_016882255 (OMIM: 603734,616532) PREDICTED: interfer (427 aa)
initn: 3028 init1: 3028 opt: 3028 Z-score: 2343.8 bits: 442.7 E(85289): 8.2e-124
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
370 380 390 400 410 420
pF1KB5 FQGPGES
:::::::
XP_016 FQGPGES
>>NP_001184052 (OMIM: 603734,616532) interferon regulato (392 aa)
initn: 2634 init1: 2634 opt: 2634 Z-score: 2041.4 bits: 386.7 E(85289): 5.8e-107
Smith-Waterman score: 2634; 100.0% identity (100.0% similar) in 372 aa overlap (56-427:21-392)
30 40 50 60 70 80
pF1KB5 WVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALN
::::::::::::::::::::::::::::::
NP_001 MVGRKQGWSCRVTGIKPGKPAWAEATGAYVPGRDKPDLPTWKRNFRSALN
10 20 30 40 50
90 100 110 120 130 140
pF1KB5 RKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLG
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB5 NMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFE
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB5 VTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVL
180 190 200 210 220 230
270 280 290 300 310 320
pF1KB5 SCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPF
240 250 260 270 280 290
330 340 350 360 370 380
pF1KB5 IVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGAS
300 310 320 330 340 350
390 400 410 420
pF1KB5 SLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES
::::::::::::::::::::::::::::::::::::::::::
NP_001 SLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES
360 370 380 390
>>XP_006723261 (OMIM: 603734,616532) PREDICTED: interfer (452 aa)
initn: 2343 init1: 2343 opt: 2343 Z-score: 1816.7 bits: 345.3 E(85289): 1.9e-94
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
:::::::::::::::::::::::::::
XP_006 PNSGHGPDGEVPKDKEGGVFDLGPFIVGSWAPRSDYLHGRKRTLTTLCPLVLCGGVMAPG
310 320 330 340 350 360
>>XP_006723260 (OMIM: 603734,616532) PREDICTED: interfer (452 aa)
initn: 2343 init1: 2343 opt: 2343 Z-score: 1816.7 bits: 345.3 E(85289): 1.9e-94
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
:::::::::::::::::::::::::::
XP_006 PNSGHGPDGEVPKDKEGGVFDLGPFIVGSWAPRSDYLHGRKRTLTTLCPLVLCGGVMAPG
310 320 330 340 350 360
>>NP_001184051 (OMIM: 603734,616532) interferon regulato (452 aa)
initn: 2343 init1: 2343 opt: 2343 Z-score: 1816.7 bits: 345.3 E(85289): 1.9e-94
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
:::::::::::::::::::::::::::
NP_001 PNSGHGPDGEVPKDKEGGVFDLGPFIVGSWAPRSDYLHGRKRTLTTLCPLVLCGGVMAPG
310 320 330 340 350 360
>>NP_001184054 (OMIM: 603734,616532) interferon regulato (281 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1557.4 bits: 296.6 E(85289): 5.2e-80
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 281 aa overlap (147-427:1-281)
120 130 140 150 160 170
pF1KB5 FSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
::::::::::::::::::::::::::::::
NP_001 MVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
10 20 30
180 190 200 210 220 230
pF1KB5 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB5 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB5 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB5 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
220 230 240 250 260 270
420
pF1KB5 EGMDFQGPGES
:::::::::::
NP_001 EGMDFQGPGES
280
>>NP_001184055 (OMIM: 603734,616532) interferon regulato (281 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1557.4 bits: 296.6 E(85289): 5.2e-80
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 281 aa overlap (147-427:1-281)
120 130 140 150 160 170
pF1KB5 FSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
::::::::::::::::::::::::::::::
NP_001 MVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
10 20 30
180 190 200 210 220 230
pF1KB5 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB5 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB5 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB5 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
220 230 240 250 260 270
420
pF1KB5 EGMDFQGPGES
:::::::::::
NP_001 EGMDFQGPGES
280
>>XP_006723263 (OMIM: 603734,616532) PREDICTED: interfer (417 aa)
initn: 1949 init1: 1949 opt: 1949 Z-score: 1514.2 bits: 289.2 E(85289): 1.3e-77
Smith-Waterman score: 1949; 100.0% identity (100.0% similar) in 272 aa overlap (56-327:21-292)
30 40 50 60 70 80
pF1KB5 WVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALN
::::::::::::::::::::::::::::::
XP_006 MVGRKQGWSCRVTGIKPGKPAWAEATGAYVPGRDKPDLPTWKRNFRSALN
10 20 30 40 50
90 100 110 120 130 140
pF1KB5 RKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLG
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB5 NMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFE
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB5 VTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVL
180 190 200 210 220 230
270 280 290 300 310 320
pF1KB5 SCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPF
240 250 260 270 280 290
330 340 350 360 370 380
pF1KB5 IVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGAS
::
XP_006 IVGSWAPRSDYLHGRKRTLTTLCPLVLCGGVMAPGPAVDQEARDGQGCAHVPQGLGRNGP
300 310 320 330 340 350
427 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:14:56 2016 done: Thu Nov 3 16:14:57 2016
Total Scan time: 9.110 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]