Result of FASTA (ccds) for
pFN21AB5164
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5164, 427 aa
1>>>pF1KB5164 427 - 427 aa - 427 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0476+/-0.000838; mu= 5.1882+/- 0.050
mean_var=158.0293+/-31.421, 0's: 0 Z-trim(113.3): 24 B-trim: 57 in 1/52
Lambda= 0.102025
statistics sampled from 13927 (13947) to 13927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.428), width: 16
Scan time: 3.480
The best scores are: opt bits E(32554)
CCDS12775.1 IRF3 gene_id:3661|Hs108|chr19 ( 427) 3028 457.3 1.3e-128
CCDS59409.1 IRF3 gene_id:3661|Hs108|chr19 ( 452) 2343 356.5 3.1e-98
CCDS59408.1 IRF3 gene_id:3661|Hs108|chr19 ( 281) 2002 306.2 2.7e-83
CCDS56099.1 IRF3 gene_id:3661|Hs108|chr19 ( 300) 1422 220.8 1.4e-57
CCDS59407.1 IRF3 gene_id:3661|Hs108|chr19 ( 154) 688 112.6 2.7e-25
CCDS10956.1 IRF8 gene_id:3394|Hs108|chr16 ( 426) 476 81.7 1.6e-15
CCDS5808.1 IRF5 gene_id:3663|Hs108|chr7 ( 498) 393 69.5 8.4e-12
CCDS43645.1 IRF5 gene_id:3663|Hs108|chr7 ( 514) 383 68.0 2.4e-11
CCDS1492.1 IRF6 gene_id:3664|Hs108|chr1 ( 467) 373 66.5 6.1e-11
>>CCDS12775.1 IRF3 gene_id:3661|Hs108|chr19 (427 aa)
initn: 3028 init1: 3028 opt: 3028 Z-score: 2422.4 bits: 457.3 E(32554): 1.3e-128
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
370 380 390 400 410 420
pF1KB5 FQGPGES
:::::::
CCDS12 FQGPGES
>>CCDS59409.1 IRF3 gene_id:3661|Hs108|chr19 (452 aa)
initn: 2343 init1: 2343 opt: 2343 Z-score: 1877.2 bits: 356.5 E(32554): 3.1e-98
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
:::::::::::::::::::::::::::
CCDS59 PNSGHGPDGEVPKDKEGGVFDLGPFIVGSWAPRSDYLHGRKRTLTTLCPLVLCGGVMAPG
310 320 330 340 350 360
>>CCDS59408.1 IRF3 gene_id:3661|Hs108|chr19 (281 aa)
initn: 2002 init1: 2002 opt: 2002 Z-score: 1608.9 bits: 306.2 E(32554): 2.7e-83
Smith-Waterman score: 2002; 100.0% identity (100.0% similar) in 281 aa overlap (147-427:1-281)
120 130 140 150 160 170
pF1KB5 FSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
::::::::::::::::::::::::::::::
CCDS59 MVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
10 20 30
180 190 200 210 220 230
pF1KB5 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB5 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB5 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB5 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
220 230 240 250 260 270
420
pF1KB5 EGMDFQGPGES
:::::::::::
CCDS59 EGMDFQGPGES
280
>>CCDS56099.1 IRF3 gene_id:3661|Hs108|chr19 (300 aa)
initn: 1422 init1: 1422 opt: 1422 Z-score: 1147.1 bits: 220.8 E(32554): 1.4e-57
Smith-Waterman score: 1841; 70.3% identity (70.3% similar) in 427 aa overlap (1-427:1-300)
10 20 30 40 50 60
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG
::::::::::::::::::::
CCDS56 PFPNLGPSENPLKRLLVPGE----------------------------------------
190 200
250 260 270 280 290 300
pF1KB5 WPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELL
CCDS56 ------------------------------------------------------------
310 320 330 340 350 360
pF1KB5 PNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
:::::::::::::::::::::::::::::::::
CCDS56 ---------------------------DLITFTEGSGRSPRYALWFCVGESWPQDQPWTK
210 220 230
370 380 390 400 410 420
pF1KB5 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMD
240 250 260 270 280 290
pF1KB5 FQGPGES
:::::::
CCDS56 FQGPGES
300
>>CCDS59407.1 IRF3 gene_id:3661|Hs108|chr19 (154 aa)
initn: 1067 init1: 685 opt: 688 Z-score: 567.5 bits: 112.6 E(32554): 2.7e-25
Smith-Waterman score: 815; 54.8% identity (54.8% similar) in 281 aa overlap (147-427:1-154)
120 130 140 150 160 170
pF1KB5 FSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
::::::::::::::::::::::::::::::
CCDS59 MVLAPLPDPGPPSLAVAPEPCPQPLRSPSL
10 20 30
180 190 200 210 220 230
pF1KB5 DNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
::::::::::::::::::::::::
CCDS59 DNPTPFPNLGPSENPLKRLLVPGE------------------------------------
40 50
240 250 260 270 280 290
pF1KB5 TLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVS
CCDS59 ------------------------------------------------------------
300 310 320 330 340 350
pF1KB5 EELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQ
:::::::::::::::::::::::::::::
CCDS59 -------------------------------DLITFTEGSGRSPRYALWFCVGESWPQDQ
60 70 80
360 370 380 390 400 410
pF1KB5 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLV
90 100 110 120 130 140
420
pF1KB5 EGMDFQGPGES
:::::::::::
CCDS59 EGMDFQGPGES
150
>>CCDS10956.1 IRF8 gene_id:3394|Hs108|chr16 (426 aa)
initn: 263 init1: 196 opt: 476 Z-score: 392.4 bits: 81.7 E(32554): 1.6e-15
Smith-Waterman score: 480; 28.1% identity (54.3% similar) in 409 aa overlap (7-387:9-390)
10 20 30 40 50
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-DFGIFQAW
:. ::. :.: .. :. : :. .. :::::::. .:: .:: : .::.::
CCDS10 MCDRNGGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 AEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSK-DPHDPHKIYEFVNS----
: : . : :: . ::: .: :::.. .. . :::. : .:.:.:..:
CCDS10 AVFKGKFKEG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQK
70 80 90 100 110
120 130 140 150 160
pF1KB5 ---GVGDFSQPDTSPDTNGGGSTSDT--QEDILDELLGNMVLAPLPDPGPPSLAVAPEPC
::. . . . . : : : .: .:. .: . .: : :: :
CCDS10 CKLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSP----------PEAC
120 130 140 150 160
170 180 190 200 210
pF1KB5 PQPL------RSPSLDNP--TPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQT
. : ..:: : : . . .. ...... . .: :. : : :
CCDS10 RSQLLPDWWAQQPSTGVPLVTGYTTYDAHHSAFSQMVI---------SFYYGGKLVGQAT
170 180 190 200 210 220
220 230 240 250 260 270
pF1KB5 ISCPEGLRLVGSEVGDRTLPGWPVTLPD--------PGMSLTDRGVMSYVRHVLSCLGGG
.:::: :: :. : ::: . :. :. .. .. . .:.... : :
CCDS10 TTCPEGCRLSLSQPG---LPGTKLYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERG
230 240 250 260 270
280 290 300 310 320 330
pF1KB5 LALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLIT
. : . : ....:: :. : . . .:. :. .. .:. ::: . :. .:
CCDS10 VLLHSSRQGVFVKRL--CQGRVFCSGNAVVCKGR-PN-KLERDEVVQVFDTSQFFRELQQ
280 290 300 310 320 330
340 350 360 370 380 390
pF1KB5 FTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMA-RVGGASSLENT
: ...:: : . .: :: .:. : ..:..:.. .: :.: : . ::.:.
CCDS10 FYNSQGRLPDGRVVLCFGEEFPDMAPLRSKLILVQIEQLYVRQLAEEAGKSCGAGSVMQA
340 350 360 370 380 390
400 410 420
pF1KB5 VDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES
CCDS10 PEEPPPDQVFRMFPDICASHQRSFFRENQQITV
400 410 420
>>CCDS5808.1 IRF5 gene_id:3663|Hs108|chr7 (498 aa)
initn: 557 init1: 159 opt: 393 Z-score: 325.3 bits: 69.5 E(32554): 8.4e-12
Smith-Waterman score: 645; 32.3% identity (54.6% similar) in 458 aa overlap (3-409:10-459)
10 20 30 40 50
pF1KB5 MGTP--KPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-D
:: . :. ::::.:.. : :. ::: . : :::.:. :. .:. :
CCDS58 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 FGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKD-PHDPHKIYEF
::.:::. :: :. : :. : :: :.: :::... .:: : .: : .:.::::
CCDS58 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
70 80 90 100 110 120
110 120 130 140 150
pF1KB5 VNSGVGDF-SQPDTSPDTNGGGSTSDTQEDILDELLGNMVLA------PLPDPG---PPS
..: . ::: : . :.. . .:. :...: .. :. : .: ::.
CCDS58 CSNGPAPTDSQPPE--DYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPT
130 140 150 160 170
160 170 180 190
pF1KB5 LAVA----------PEPCPQPLRSPSLD------------NPTPFP-NLGPS-ENPLKRL
: : : :.:: : . .: :.: .: :. :. : :
CCDS58 LQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDL
180 190 200 210 220 230
200 210 220 230 240
pF1KB5 LVPGEEW---EFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRT----LPGWPVTL---
:. . ..:. :::: ::: :.: :: :.. : : :..:
CCDS58 LISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFG-PISLEQV
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB5 --PDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNS
:.: .:. . :. ..:. : :: : :: :.: :: .:...:. .:
CCDS58 RFPSPEDIPSDKQRF-YTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDS
300 310 320 330 340 350
310 320 330 340 350 360
pF1KB5 GHGPDGEVPKDKEGGVFDLGPFIVDLITFTEG-SGRSPRYALWFCVGESWPQDQPWTKRL
.: . .. . .:.: :. .:: : .: .. : . ..:: :: ::. .: :.:
CCDS58 CPNP---IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKL
360 370 380 390 400 410
370 380 390 400 410 420
pF1KB5 VMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQ
. :.:::. : :.:: : : ... :.::: . .:.:
CCDS58 ITVQVVPVAARLLLEMFS-GELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQ
420 430 440 450 460 470
pF1KB5 GPGES
CCDS58 PVAQAPPGAGLGVGQGPWPMHPAGMQ
480 490
>>CCDS43645.1 IRF5 gene_id:3663|Hs108|chr7 (514 aa)
initn: 562 init1: 170 opt: 383 Z-score: 317.2 bits: 68.0 E(32554): 2.4e-11
Smith-Waterman score: 620; 32.7% identity (53.2% similar) in 462 aa overlap (3-397:10-463)
10 20 30 40 50
pF1KB5 MGTP--KPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQE-D
:: . :. ::::.:.. : :. ::: . : :::.:. :. .:. :
CCDS43 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 FGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKD-PHDPHKIYEF
::.:::. :: :. : :. : :: :.: :::... .:: : .: : .:.::::
CCDS43 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB5 VNSGVGDF-SQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGP---P-SLA---
..: . ::: : . :.. . .:. :...: .. :. . :: : ::
CCDS43 CSNGPAPTDSQPPE--DYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKED
130 140 150 160 170
170 180 190
pF1KB5 VAPEPCPQP--LRSPSLDNPT-------------PFPNLGPSENP------LKRLLVPG-
: : :: :: :.:. :: : : : :: :...: ::
CCDS43 VKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGP
180 190 200 210 220 230
200 210 220 230
pF1KB5 ---------EEW--------------EFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDR
:. ..:. :::: ::: :.: :: :..
CCDS43 LPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEAT
240 250 260 270 280 290
240 250 260 270 280
pF1KB5 T----LPGWPVTL-----PDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLG
: : :..: :.: .:. . :. ..:. : :: : :: :.: ::
CCDS43 QEQVELFG-PISLEQVRFPSPEDIPSDKQRF-YTNQLLDVLDRGLILQLQGQDLYAIRLC
300 310 320 330 340 350
290 300 310 320 330 340
pF1KB5 HCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEG-SGRSPRYALWF
.:...:. .: .: . .. . .:.: :. .:: : .: .. : . ..:
CCDS43 QCKVFWSGPCASAHDSCPNP---IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFF
360 370 380 390 400 410
350 360 370 380 390 400
pF1KB5 CVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPLSLTSD
: :: ::. .: :.:. :.:::. : :.:: : : ... :.:::
CCDS43 CFGEEWPDRKPREKKLITVQVVPVAARLLLEMFS-GELSWSADSIRLQISNPDLKDRMVE
420 430 440 450 460 470
410 420
pF1KB5 QYKAYLQDLVEGMDFQGPGES
CCDS43 QFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ
480 490 500 510
>>CCDS1492.1 IRF6 gene_id:3664|Hs108|chr1 (467 aa)
initn: 502 init1: 169 opt: 373 Z-score: 309.9 bits: 66.5 E(32554): 6.1e-11
Smith-Waterman score: 623; 31.1% identity (58.1% similar) in 453 aa overlap (7-422:9-446)
10 20 30 40 50
pF1KB5 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFG-IFQAW
:. ::::.:.: : :. :.... ::.:::::. :.. :::. . ::.::
CCDS14 MALHPRRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 AEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKD-PHDPHKIYEFVNSGVGD
: :: : : : :: :: ..: :::... . : : .:. : .: :::. : :
CCDS14 AVETGKYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQ-----VCD
70 80 90 100 110
120 130 140 150 160
pF1KB5 FSQPDTS---PDTNGGG----STSDT-QEDILDELLGNMVLAPLPDPGPPSLAVAPEP-C
. ::. : : ..:.. . .:. .:: ::: .. .:. : : : . :
CCDS14 IPQPQGSIINPGSTGSAPWDEKDNDVDEEDEEDELDQSQHHVPIQDTFP-FLNINGSPMA
120 130 140 150 160 170
170 180 190 200 210
pF1KB5 PQPLRSPSLDNPTP---FPNLGPSE-----NPLKRLLVPGEEW-------EFEVTAFYRG
: . . :. : .: .:. : : :.. . : : .... :::
CCDS14 PASVGNCSVGNCSPEAVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRG
180 190 200 210 220 230
220 230 240 250 260
pF1KB5 RQVFQ-QTISCPEGLRLVGSEVG----DRTLPGWPVTLPD---PG-MSLTDRGVMSYVRH
.. : .:.: :.: :: ...: .. : : ::.: . :: .:.. .. .
CCDS14 KEYGQTMTVSNPQGCRLFYGDLGPMPDQEELFG-PVSLEQVKFPGPEHITNEKQKLFTSK
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB5 VLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLG
.:. . :: : .:. ..: :: .:..:: : : : .:. . ..:. .: :
CCDS14 LLDVMDRGLILEVSGHAIYAIRLCQCKVYW--SGPCAP-SLVAPN-LIERQKKVKLFCLE
300 310 320 330 340
330 340 350 360 370 380
pF1KB5 PFIVDLITFTEGS-GRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVG
:. :::. .:. ..: . ...: :: ::. .: ..:..:.:.:. : . ::
CCDS14 TFLSDLIAHQKGQIEKQPPFEIYLCFGEEWPDGKPLERKLILVQVIPVVARMIYEMFSGD
350 360 370 380 390 400
390 400 410 420
pF1KB5 GASSLEN-TVDLHISNSHPLSLTSDQYKAYLQDLVEGMDFQGPGES
. :... .: :.::. .:. : :..: . .. :
CCDS14 FTRSFDSGSVRLQISTPD----IKDNIVAQLKQLYRILQTQESWQPMQPTPSMQLPPALP
410 420 430 440 450 460
CCDS14 PQ
427 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:14:55 2016 done: Thu Nov 3 16:14:56 2016
Total Scan time: 3.480 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]