Result of FASTA (ccds) for
pFN21AB3870
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3870, 367 aa
1>>>pF1KB3870 367 - 367 aa - 367 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6098+/-0.000895; mu= 14.6103+/- 0.054
mean_var=63.1011+/-12.267, 0's: 0 Z-trim(105.7): 29 B-trim: 2 in 1/49
Lambda= 0.161457
statistics sampled from 8549 (8576) to 8549 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.263), width: 16
Scan time: 2.640
The best scores are: opt bits E(32554)
CCDS55.1 KCNAB2 gene_id:8514|Hs108|chr1 ( 367) 2433 575.4 2.7e-164
CCDS56.1 KCNAB2 gene_id:8514|Hs108|chr1 ( 353) 2205 522.3 2.5e-148
CCDS55571.1 KCNAB2 gene_id:8514|Hs108|chr1 ( 300) 1979 469.6 1.5e-132
CCDS33882.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 401) 1940 460.6 1.1e-129
CCDS3175.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 408) 1931 458.5 4.7e-129
CCDS3174.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 419) 1925 457.1 1.3e-128
CCDS11124.1 KCNAB3 gene_id:9196|Hs108|chr17 ( 404) 1712 407.5 1.1e-113
CCDS55570.1 KCNAB2 gene_id:8514|Hs108|chr1 ( 415) 1344 321.8 6.9e-88
CCDS77845.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 372) 1161 279.1 4.2e-75
CCDS77844.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 390) 1161 279.1 4.4e-75
CCDS194.1 AKR7A2 gene_id:8574|Hs108|chr1 ( 359) 272 72.0 8.9e-13
CCDS193.1 AKR7A3 gene_id:22977|Hs108|chr1 ( 331) 268 71.1 1.6e-12
>>CCDS55.1 KCNAB2 gene_id:8514|Hs108|chr1 (367 aa)
initn: 2433 init1: 2433 opt: 2433 Z-score: 3063.1 bits: 575.4 E(32554): 2.7e-164
Smith-Waterman score: 2433; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KB3 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 MAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 MTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 CTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPY
310 320 330 340 350 360
pF1KB3 SKKDYRS
:::::::
CCDS55 SKKDYRS
>>CCDS56.1 KCNAB2 gene_id:8514|Hs108|chr1 (353 aa)
initn: 2179 init1: 2179 opt: 2205 Z-score: 2776.4 bits: 522.3 E(32554): 2.5e-148
Smith-Waterman score: 2299; 96.2% identity (96.2% similar) in 367 aa overlap (1-367:1-353)
10 20 30 40 50 60
pF1KB3 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTF
::::::::::::::::::::::::: :::::::::::::::::::::
CCDS56 MYPESTTGSPARLSLRQTGSPGMIY--------------RNLGKSGLRVSCLGLGTWVTF
10 20 30 40
70 80 90 100 110 120
pF1KB3 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB3 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB3 MAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB3 MTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLG
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB3 CTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPY
290 300 310 320 330 340
pF1KB3 SKKDYRS
:::::::
CCDS56 SKKDYRS
350
>>CCDS55571.1 KCNAB2 gene_id:8514|Hs108|chr1 (300 aa)
initn: 1979 init1: 1979 opt: 1979 Z-score: 2493.0 bits: 469.6 E(32554): 1.5e-132
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 300 aa overlap (68-367:1-300)
40 50 60 70 80 90
pF1KB3 FYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEV
::::::::::::::::::::::::::::::
CCDS55 MAEQLMTLAYDNGINLFDTAEVYAAGKAEV
10 20 30
100 110 120 130 140 150
pF1KB3 VLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFA
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB3 NRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEY
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB3 HMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKI
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB3 LSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAI
220 230 240 250 260 270
340 350 360
pF1KB3 QVLPKLSSSIIHEIDSILGNKPYSKKDYRS
::::::::::::::::::::::::::::::
CCDS55 QVLPKLSSSIIHEIDSILGNKPYSKKDYRS
280 290 300
>>CCDS33882.1 KCNAB1 gene_id:7881|Hs108|chr3 (401 aa)
initn: 1931 init1: 1931 opt: 1940 Z-score: 2441.9 bits: 460.6 E(32554): 1.1e-129
Smith-Waterman score: 1940; 80.6% identity (93.4% similar) in 350 aa overlap (18-367:52-401)
10 20 30 40
pF1KB3 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGL
: .: : . .. :. . :::::::::
CCDS33 LSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGL
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB3 RVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKG
:::::::::::::::::.::.::.:::.::..:.::::::::::::::::.::.::::::
CCDS33 RVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKG
90 100 110 120 130 140
110 120 130 140 150 160
pF1KB3 WRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPME
:::::::::::..:::::::::::::::::::::.::.:::::::::::::::: :::::
CCDS33 WRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPME
150 160 170 180 190 200
170 180 190 200 210 220
pF1KB3 ETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEV
: ::::::::::::::::::::::.::::::::::::::. ::.:::::::.::::::::
CCDS33 EIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEV
210 220 230 240 250 260
230 240 250 260 270 280
pF1KB3 QLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQA
:::::.:::::::::::::::::.:::: .:.: :::::: :::::..:.:::::.::
CCDS33 QLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQN
270 280 290 300 310 320
290 300 310 320 330 340
pF1KB3 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSI
:::.:. :::::::::::::.:::::::::::::::.:. .::.::.::::::::..: .
CCDS33 KLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHV
330 340 350 360 370 380
350 360
pF1KB3 IHEIDSILGNKPYSKKDYRS
..:::.:: :::::::::::
CCDS33 VNEIDNILRNKPYSKKDYRS
390 400
>>CCDS3175.1 KCNAB1 gene_id:7881|Hs108|chr3 (408 aa)
initn: 1931 init1: 1931 opt: 1931 Z-score: 2430.4 bits: 458.5 E(32554): 4.7e-129
Smith-Waterman score: 1931; 84.5% identity (96.4% similar) in 329 aa overlap (39-367:80-408)
10 20 30 40 50 60
pF1KB3 SPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEM
::::::::::::::::::::::::::.::.
CCDS31 GAAEQKYVEKFLRVHGISLQETTRAETGMAYRNLGKSGLRVSCLGLGTWVTFGGQISDEV
50 60 70 80 90 100
70 80 90 100 110 120
pF1KB3 AEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETE
::.:::.::..:.::::::::::::::::.::.:::::::::::::::::..::::::::
CCDS31 AERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETE
110 120 130 140 150 160
130 140 150 160 170 180
pF1KB3 RGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTS
:::::::::::::.::.:::::::::::::::: :::::: :::::::::::::::::::
CCDS31 RGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTS
170 180 190 200 210 220
190 200 210 220 230 240
pF1KB3 RWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLAC
:::.::::::::::::::. ::.:::::::.:::::::::::::.:::::::::::::::
CCDS31 RWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLAC
230 240 250 260 270 280
250 260 270 280 290 300
pF1KB3 GIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAI
::.:::: .:.: :::::: :::::..:.:::::.:: :::.:. :::::::::::::.
CCDS31 GIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAV
290 300 310 320 330 340
310 320 330 340 350 360
pF1KB3 AWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
:::::::::::::::.:. .::.::.::::::::..: ...:::.:: :::::::::::
CCDS31 AWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
350 360 370 380 390 400
>>CCDS3174.1 KCNAB1 gene_id:7881|Hs108|chr3 (419 aa)
initn: 1925 init1: 1925 opt: 1925 Z-score: 2422.7 bits: 457.1 E(32554): 1.3e-128
Smith-Waterman score: 1925; 84.2% identity (96.4% similar) in 329 aa overlap (39-367:91-419)
10 20 30 40 50 60
pF1KB3 SPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEM
.:::::::::::::::::::::::::.::.
CCDS31 ALLREVEMNWYLKLCDLSSEHTTVCTTGMPHRNLGKSGLRVSCLGLGTWVTFGGQISDEV
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB3 AEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETE
::.:::.::..:.::::::::::::::::.::.:::::::::::::::::..::::::::
CCDS31 AERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETE
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB3 RGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTS
:::::::::::::.::.:::::::::::::::: :::::: :::::::::::::::::::
CCDS31 RGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTS
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB3 RWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLAC
:::.::::::::::::::. ::.:::::::.:::::::::::::.:::::::::::::::
CCDS31 RWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLAC
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB3 GIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAI
::.:::: .:.: :::::: :::::..:.:::::.:: :::.:. :::::::::::::.
CCDS31 GIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAV
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB3 AWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
:::::::::::::::.:. .::.::.::::::::..: ...:::.:: :::::::::::
CCDS31 AWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
370 380 390 400 410
>>CCDS11124.1 KCNAB3 gene_id:9196|Hs108|chr17 (404 aa)
initn: 1706 init1: 1706 opt: 1712 Z-score: 2154.8 bits: 407.5 E(32554): 1.1e-113
Smith-Waterman score: 1712; 69.4% identity (88.1% similar) in 360 aa overlap (7-363:49-404)
10 20 30
pF1KB3 MYPESTTGSPARLSL--RQTGSPGMIY-STRYGSPK
.: :: .: : . : . :: :.
CCDS11 DRLCGPRPGPGGGNGGPAGGGHGNPPGGGGSGPKARAALVPRPPAPAGALRESTGRGTGM
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB3 RQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAG
. :::::::::::::::::::::::.::.:: ::...:.::..:.::::::::::::
CCDS11 K----YRNLGKSGLRVSCLGLGTWVTFGSQISDETAEDVLTVAYEHGVNLFDTAEVYAAG
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB3 KAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVD
::: .::::.:.::::::: ::::::::::.::::::::::::::::..::::::: :::
CCDS11 KAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLRGSLERLQLGYVD
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB3 VVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICE
.::::: ::: :::: :::::.:::::.:.:::::::.. :::::::.:::::: ::.::
CCDS11 IVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCE
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB3 QAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWL
:::.:.:::::::.:::::.::::::..:: :::::....:::. .: :::.::::::
CCDS11 QAEHHLFQREKVEMQLPELYHKIGVGSVTWYPLACGLITSKYDGRVPDTCRASIKGYQWL
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB3 KDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMEN
:::. ::.:..::::. .: .:..::::. :::::::::.:::::::::.:.:.::.:.
CCDS11 KDKVQSEDGKKQQAKVMDLLPVAHQLGCTVAQLAIAWCLRSEGVSSVLLGVSSAEQLIEH
320 330 340 350 360 370
340 350 360
pF1KB3 IGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
.::.::: .:. . . :::..:::::.:::
CCDS11 LGALQVLSQLTPQTVMEIDGLLGNKPHSKK
380 390 400
>>CCDS55570.1 KCNAB2 gene_id:8514|Hs108|chr1 (415 aa)
initn: 1344 init1: 1344 opt: 1344 Z-score: 1691.4 bits: 321.8 E(32554): 6.9e-88
Smith-Waterman score: 2140; 93.8% identity (94.6% similar) in 352 aa overlap (31-367:64-415)
10 20 30 40 50 60
pF1KB3 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTF
. .: . ::::::::::::::::::::::
CCDS55 LQRLREVRAAAQARNMESFLRMHGLSLDGCTAQRTGMKYRNLGKSGLRVSCLGLGTWVTF
40 50 60 70 80 90
70 80 90 100 110 120
pF1KB3 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIF
100 110 120 130 140 150
130 140 150 160
pF1KB3 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPME-------------
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEGDPFSSSKSRTFI
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB3 --ETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKV
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB3 EVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQ
280 290 300 310 320 330
290 300 310 320 330 340
pF1KB3 QAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSS
340 350 360 370 380 390
350 360
pF1KB3 SIIHEIDSILGNKPYSKKDYRS
::::::::::::::::::::::
CCDS55 SIIHEIDSILGNKPYSKKDYRS
400 410
>>CCDS77845.1 KCNAB1 gene_id:7881|Hs108|chr3 (372 aa)
initn: 1161 init1: 1161 opt: 1161 Z-score: 1461.8 bits: 279.1 E(32554): 4.2e-75
Smith-Waterman score: 1701; 73.1% identity (85.4% similar) in 350 aa overlap (18-367:52-372)
10 20 30 40
pF1KB3 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGL
: .: : . .. :. . :::::::::
CCDS77 LSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGL
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB3 RVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKG
:::::::::::::::::.::.::.:::.::..:.::::::::::::::::.::.::::::
CCDS77 RVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKG
90 100 110 120 130 140
110 120 130 140 150 160
pF1KB3 WRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPME
:::::::::::..::::::::::::::::::
CCDS77 WRRSSLVITTKLYWGGKAETERGLSRKHIIE-----------------------------
150 160 170
170 180 190 200 210 220
pF1KB3 ETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEV
: ::::::::::::::::::::::.::::::::::::::. ::.:::::::.::::::::
CCDS77 EIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEV
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 QLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQA
:::::.:::::::::::::::::.:::: .:.: :::::: :::::..:.:::::.::
CCDS77 QLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQN
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB3 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSI
:::.:. :::::::::::::.:::::::::::::::.:. .::.::.::::::::..: .
CCDS77 KLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHV
300 310 320 330 340 350
350 360
pF1KB3 IHEIDSILGNKPYSKKDYRS
..:::.:: :::::::::::
CCDS77 VNEIDNILRNKPYSKKDYRS
360 370
>>CCDS77844.1 KCNAB1 gene_id:7881|Hs108|chr3 (390 aa)
initn: 1161 init1: 1161 opt: 1161 Z-score: 1461.4 bits: 279.1 E(32554): 4.4e-75
Smith-Waterman score: 1686; 76.3% identity (87.8% similar) in 329 aa overlap (39-367:91-390)
10 20 30 40 50 60
pF1KB3 SPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEM
.:::::::::::::::::::::::::.::.
CCDS77 ALLREVEMNWYLKLCDLSSEHTTVCTTGMPHRNLGKSGLRVSCLGLGTWVTFGGQISDEV
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB3 AEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETE
::.:::.::..:.::::::::::::::::.::.:::::::::::::::::..::::::::
CCDS77 AERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETE
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB3 RGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTS
:::::::::: : :::::::::::::::::::
CCDS77 RGLSRKHIIE-----------------------------EIVRAMTHVINQGMAMYWGTS
190 200 210
190 200 210 220 230 240
pF1KB3 RWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLAC
:::.::::::::::::::. ::.:::::::.:::::::::::::.:::::::::::::::
CCDS77 RWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLAC
220 230 240 250 260 270
250 260 270 280 290 300
pF1KB3 GIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAI
::.:::: .:.: :::::: :::::..:.:::::.:: :::.:. :::::::::::::.
CCDS77 GIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAV
280 290 300 310 320 330
310 320 330 340 350 360
pF1KB3 AWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
:::::::::::::::.:. .::.::.::::::::..: ...:::.:: :::::::::::
CCDS77 AWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
340 350 360 370 380 390
367 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:07:18 2016 done: Thu Nov 3 14:07:19 2016
Total Scan time: 2.640 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]