Result of FASTA (omim) for
pFN21AB3329
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3329, 949 aa
1>>>pF1KB3329 949 - 949 aa - 949 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7767+/-0.00042; mu= 10.2629+/- 0.026
mean_var=160.5118+/-32.118, 0's: 0 Z-trim(116.1): 405 B-trim: 38 in 1/55
Lambda= 0.101233
statistics sampled from 26657 (27076) to 26657 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.317), width: 16
Scan time: 13.300
The best scores are: opt bits E(85289)
NP_061725 (OMIM: 606317) protocadherin alpha-11 is ( 949) 6213 920.4 0
NP_114067 (OMIM: 606317) protocadherin alpha-11 is ( 810) 5168 767.7 0
NP_061727 (OMIM: 606319) protocadherin alpha-13 is ( 950) 5035 748.3 4.1e-215
NP_061734 (OMIM: 606314) protocadherin alpha-8 iso ( 950) 5034 748.2 4.6e-215
NP_061732 (OMIM: 606312) protocadherin alpha-6 iso ( 950) 5003 743.7 1.1e-213
NP_061723 (OMIM: 606307) protocadherin alpha-1 iso ( 950) 5000 743.2 1.4e-213
NP_061730 (OMIM: 606310) protocadherin alpha-4 iso ( 947) 4991 741.9 3.5e-213
NP_061724 (OMIM: 606316) protocadherin alpha-10 is ( 948) 4967 738.4 4e-212
NP_061728 (OMIM: 606308) protocadherin alpha-2 iso ( 948) 4963 737.8 6e-212
NP_061729 (OMIM: 606309) protocadherin alpha-3 iso ( 950) 4940 734.5 6.2e-211
NP_114063 (OMIM: 606315) protocadherin alpha-9 iso ( 950) 4876 725.1 4e-208
NP_114071 (OMIM: 606319) protocadherin alpha-13 is ( 807) 4005 597.9 7e-170
NP_114062 (OMIM: 606314) protocadherin alpha-8 iso ( 814) 3993 596.1 2.4e-169
NP_061726 (OMIM: 606318) protocadherin alpha-12 is ( 941) 3968 592.5 3.3e-168
NP_113688 (OMIM: 606310) protocadherin alpha-4 iso ( 798) 3964 591.9 4.4e-168
NP_114036 (OMIM: 606312) protocadherin alpha-6 iso ( 803) 3960 591.3 6.6e-168
NP_113598 (OMIM: 606307) protocadherin alpha-1 iso ( 807) 3955 590.6 1.1e-167
NP_114070 (OMIM: 606318) protocadherin alpha-12 is ( 792) 3934 587.5 9.1e-167
NP_061731 (OMIM: 606311) protocadherin alpha-5 iso ( 936) 3931 587.1 1.4e-166
NP_061733 (OMIM: 606313) protocadherin alpha-7 iso ( 937) 3929 586.8 1.7e-166
NP_114065 (OMIM: 606316) protocadherin alpha-10 is ( 844) 3924 586.0 2.6e-166
NP_113684 (OMIM: 606308) protocadherin alpha-2 iso ( 808) 3918 585.1 4.7e-166
NP_113683 (OMIM: 606308) protocadherin alpha-2 iso ( 824) 3918 585.2 4.7e-166
NP_113689 (OMIM: 606311) protocadherin alpha-5 iso ( 816) 3906 583.4 1.6e-165
NP_114040 (OMIM: 606313) protocadherin alpha-7 iso ( 789) 3903 583.0 2.1e-165
NP_113685 (OMIM: 606309) protocadherin alpha-3 iso ( 824) 3901 582.7 2.6e-165
NP_054724 (OMIM: 606315) protocadherin alpha-9 iso ( 842) 3831 572.5 3.2e-162
NP_113599 (OMIM: 606307) protocadherin alpha-1 iso ( 686) 2608 393.8 1.6e-108
NP_114037 (OMIM: 606312) protocadherin alpha-6 iso ( 686) 2604 393.2 2.4e-108
NP_114066 (OMIM: 606316) protocadherin alpha-10 is ( 685) 2602 392.9 2.9e-108
NP_002579 (OMIM: 603627) protocadherin gamma-C3 is ( 934) 1979 302.0 9.2e-81
NP_061748 (OMIM: 606302) protocadherin gamma-B5 is ( 923) 1975 301.4 1.4e-80
NP_003727 (OMIM: 603058) protocadherin gamma-B4 is ( 923) 1946 297.2 2.6e-79
NP_061750 (OMIM: 606304) protocadherin gamma-B7 is ( 929) 1946 297.2 2.6e-79
NP_115778 (OMIM: 603627) protocadherin gamma-C3 is ( 863) 1943 296.7 3.3e-79
NP_115265 (OMIM: 603059) protocadherin gamma-A12 i ( 820) 1936 295.7 6.5e-79
NP_003726 (OMIM: 603059) protocadherin gamma-A12 i ( 932) 1936 295.7 7.2e-79
NP_114480 (OMIM: 606298) protocadherin gamma-A11 i ( 837) 1925 294.1 2e-78
NP_061737 (OMIM: 606298) protocadherin gamma-A11 i ( 935) 1925 294.1 2.2e-78
NP_114479 (OMIM: 606297) protocadherin gamma-A10 i ( 850) 1922 293.7 2.7e-78
NP_061736 (OMIM: 606297) protocadherin gamma-A10 i ( 936) 1922 293.7 3e-78
NP_115272 (OMIM: 606304) protocadherin gamma-B7 is ( 808) 1920 293.3 3.2e-78
NP_114443 (OMIM: 606292) protocadherin gamma-A5 is ( 813) 1919 293.2 3.6e-78
NP_114442 (OMIM: 606291) protocadherin gamma-A4 is ( 851) 1919 293.2 3.7e-78
NP_061741 (OMIM: 606292) protocadherin gamma-A5 is ( 931) 1919 293.2 4e-78
NP_114475 (OMIM: 606293) protocadherin gamma-A6 is ( 818) 1917 292.9 4.4e-78
NP_061742 (OMIM: 606293) protocadherin gamma-A6 is ( 932) 1917 293.0 4.9e-78
NP_115266 (OMIM: 606299) protocadherin gamma-B1 is ( 810) 1914 292.5 5.9e-78
NP_061745 (OMIM: 606299) protocadherin gamma-B1 is ( 927) 1914 292.5 6.6e-78
NP_061740 (OMIM: 606291) protocadherin gamma-A4 is ( 962) 1914 292.5 6.8e-78
>>NP_061725 (OMIM: 606317) protocadherin alpha-11 isofor (949 aa)
initn: 6213 init1: 6213 opt: 6213 Z-score: 4912.7 bits: 920.4 E(85289): 0
Smith-Waterman score: 6213; 100.0% identity (100.0% similar) in 949 aa overlap (1-949:1-949)
10 20 30 40 50 60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQ
850 860 870 880 890 900
910 920 930 940
pF1KB3 EPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940
>>NP_114067 (OMIM: 606317) protocadherin alpha-11 isofor (810 aa)
initn: 5168 init1: 5168 opt: 5168 Z-score: 4088.9 bits: 767.7 E(85289): 0
Smith-Waterman score: 5168; 100.0% identity (100.0% similar) in 797 aa overlap (1-797:1-797)
10 20 30 40 50 60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
:::::::::::::::::
NP_114 KEEEGERQEPGSNHPGQVSFLQIPPIRKCM
790 800 810
>>NP_061727 (OMIM: 606319) protocadherin alpha-13 isofor (950 aa)
initn: 5026 init1: 3756 opt: 5035 Z-score: 3982.9 bits: 748.3 E(85289): 4.1e-215
Smith-Waterman score: 5035; 81.7% identity (92.4% similar) in 945 aa overlap (10-949:7-950)
10 20 30 40 50
pF1KB3 MFGFQRRGLGTPR---LQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELA
: :: : ::::.: ::.::::::::: :::::::::::::::::::::
NP_061 MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELA
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 ELVQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVF
::: :::::::: :::::::::::::::::::::::::::.:::::::::::::::::::
NP_061 ELVPRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 HVNVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEY
::.:.:.:::::::.: .....::::. ..::::.::::::: :. :::::. :.:
NP_061 HVEVKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 FSLDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVND
:.::. .. .:.. :::.:.:.::::. : .:::::.:::::::::::.::. .:::::
NP_061 FTLDAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVND
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 NDPEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQ
: ::: .: :::...::: . :::.:::::: :.:.::...::. . : . ::..
NP_061 NAPEFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINP
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 NNGEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSL
::::.:..: ::.::.:.:.: :.:.:::. :::::::. ::.::.:::.:::..:::::
NP_061 NNGEIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSL
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 PVREDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDREN
:.:::.:::..:::::::::::: ::::::.::::::::::::.:::::::::::::::.
NP_061 PIREDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRES
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB3 VWAYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
: :::::::::::::::::::: ::: :::::::::::::::::::::::::::::::::
NP_061 VSAYELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB3 SARDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
::.::::::::::::::::::.:.::::::::::::::::::::::::::::::::::::
NP_061 SAQDADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB3 RDAGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAV
::.:::::.::::::::::::::::::::. ::::::.:..:.::::::::::::::::
NP_061 RDSGVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAV
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB3 DADSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEP
::::::::::::::: :: :.::::::::::::::::: :::.:.:.:::::::::::::
NP_061 DADSGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEP
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB3 ALTATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLL
:::::::::.:::::::::.::::. :::..:::::::::::::::::.:::::::::::
NP_061 ALTATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLL
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB3 YTALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLP
:::: :: :::::::::::::::: :.:::::::::: :::: ::: ::::::::::::
NP_061 YTALRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLP
720 730 740 750 760 770
780 790 800 810 820 830
pF1KB3 LGLNKEE-EGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
:.. : :.:.: :. .::::::::::::::::::::::::::::::::::::::
NP_061 PCLGSAEGTGQREED-SECLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
780 790 800 810 820 830
840 850 860 870 880 890
pF1KB3 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
840 850 860 870 880 890
900 910 920 930 940
pF1KB3 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940 950
>>NP_061734 (OMIM: 606314) protocadherin alpha-8 isoform (950 aa)
initn: 5039 init1: 3758 opt: 5034 Z-score: 3982.1 bits: 748.2 E(85289): 4.6e-215
Smith-Waterman score: 5034; 81.6% identity (91.8% similar) in 948 aa overlap (4-949:3-950)
10 20 30 40 50
pF1KB3 MFGFQRRG-LGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAEL
.. :: ::. :: : :::: :.:::::::::: :::::::::::::::::::::::
NP_061 MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAEL
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 VQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHV
: :::::::: : :::::.:::::::::::::::::::.:::::::::::::::::::::
NP_061 VPRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 NVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFS
.:::::.::::::: ...:::...::.. :::::::::::::. :..::::::...::
NP_061 DVEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFM
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 LDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDND
:: ... . : . :.:.:::::: .: .:.:::::::::::::::.::: :::::::
NP_061 LDVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 PEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNN
: :..:::.: ..::: . : :.::::.: :::.:: ..::. : .. :..:.:.
NP_061 PTFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
::. . :.::.:....::: ..::::: ::::::::: :.::: ::: ::.:.:::::::
NP_061 GEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPV
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
::::: .::::::::.: :::.:::::::: :::::::::::::::::::::::::: :
NP_061 REDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVS
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
:::::::::::::::::::: .::::::::::::::::::::::::::::::::::::::
NP_061 AYELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
:::::::::::::::::::.:.:.::::.:::.:::::::::::::::::::::::::::
NP_061 RDADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARD
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
::::::.:::::::::::::::::::: ..:..:::..:::::::::::::::::::::
NP_061 AGVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDA
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
::::::::::::::::.. :::::::::::::::::.:::::::::::::::::::::::
NP_061 DSGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPAL
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
:::::::::::::::::::::: ::. .:::::::::::::::::.:::::::::::::
NP_061 TATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG
:: :: ::::.: :::::::: ::::::::::. ::::: ::::::::::::: ::
NP_061 ALRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPD
720 730 740 750 760 770
780 790 800 810 820 830
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
:.. . ::.:. . .: .:::::::::::::::::::::::::::::::::::::::::
NP_061 LGSVDVGEEQDLNVDHGLKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
780 790 800 810 820 830
840 850 860 870 880 890
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
840 850 860 870 880 890
900 910 920 930 940
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940 950
>>NP_061732 (OMIM: 606312) protocadherin alpha-6 isoform (950 aa)
initn: 5008 init1: 3742 opt: 5003 Z-score: 3957.7 bits: 743.7 E(85289): 1.1e-213
Smith-Waterman score: 5003; 81.7% identity (92.1% similar) in 946 aa overlap (9-949:9-950)
10 20 30 40 50 60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
:: : : :::: :.:::::::::: ::::::::::::::::::::::::
NP_061 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
::::.::: . :::::::::::::::::::::::::.:::::::::::::::::::::.
NP_061 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
:::.:::::::.: ..::..:: ::. :: ::::::::::. :..:::.::..:::.:
NP_061 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
: :. . :...:.::::::::..: ::.:::::::::::::::.::: ::::::: :
NP_061 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNG--RHLFTLDQNN
:..:::.: ..::: . : :..:::.:::::.:: ..::. :. : :..:.:.
NP_061 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDH-FSIDRNT
250 260 270 280 290
300 310 320 330 340 350
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
::. . :.::.:....::: ..::::: ::::::::: :.::: ::: ::.:.:::::::
NP_061 GEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPV
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
::::: .::::::::.: :::.::::.::::::::::::::::::::::::::::::.:
NP_061 REDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVS
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
:::::::::::::::::::: .::::::.:::::::::::::::::::::::::::::::
NP_061 AYELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
:::::::::::::::::::.:.::::::.:::::::::::::::::::::::::::::::
NP_061 RDADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARD
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
::::::.::::::::::::::::::::: ..:..::::..:::::.:::.::::::::::
NP_061 AGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDA
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
:::::::::::::: :...:.:::::::::::::::.:::::::::::::::::::::::
NP_061 DSGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPAL
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
::::::::::::::::::::::. .:::.:::::::::::::::::.:::::::::::::
NP_061 TATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSL---
:: :: ::::::. ::::::: ::::::::::::::::: ::::: :::::::::
NP_061 ALRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPC
720 730 740 750 760 770
780 790 800 810 820 830
pF1KB3 PLGLNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
:. ..: .: :. . .: ..::::::::::::::::::::::::::::::::::::::
NP_061 PIMMGK---AENQDLNEDHDAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
780 790 800 810 820 830
840 850 860 870 880 890
pF1KB3 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
840 850 860 870 880 890
900 910 920 930 940
pF1KB3 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940 950
>>NP_061723 (OMIM: 606307) protocadherin alpha-1 isoform (950 aa)
initn: 4995 init1: 3729 opt: 5000 Z-score: 3955.3 bits: 743.2 E(85289): 1.4e-213
Smith-Waterman score: 5000; 81.9% identity (91.7% similar) in 948 aa overlap (4-949:3-950)
10 20 30 40 50
pF1KB3 MFGFQRRG-LGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAEL
:.::: ::. : :::::: :::::::::::. :::::::::::.:::::::::::
NP_061 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAEL
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 VQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHV
: :::::::::: :::::::::::::::::::::::: :::::::::.:.:::::::::
NP_061 VPRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 NVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFS
.:.::::::::::: ::: ..: ::. .::::.:::.:::: :::::: :: ..:::
NP_061 EVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 LDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDND
:: .. . : : : :.: ::::.::::.::::::::::::: :::.::. :::::::
NP_061 LDVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 PEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNN
: ::.. :.: :.:..:. ::: :::.: ::::::::..:. : :. . .. : .:...
NP_061 PLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
::.:. :::::.: :.:.:.:.:::.:::..:: : :..::.:::.::.::::: ::.
NP_061 GEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPI
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
:::: :::::::.:::::::.:::::::: ::::::::::::::::::::::::::..
NP_061 REDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLS
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
:::::::::::::::::::.:.::::.:::::::::::::::::::::::::::::::::
NP_061 RDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARD
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
::::::.::::::::::::::::::::: ..:.. :::..:::: :::::::::::::::
NP_061 AGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDA
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
::::::::::::::::::.:::::::::::::::::.::::: :.::::::::::::::
NP_061 DSGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPAL
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
::::::::::::::::::::::. .:.:.:::::::::::::::::.:::::::::::::
NP_061 TATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG
:: :. ::::: .::::::::: :.:::: :::::::::: :::::::::::::.: .
NP_061 ALRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPS
720 730 740 750 760 770
780 790 800 810 820 830
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
:: :..:. : . . :.:::::::::::::::::::::::::::::::::::::::::
NP_061 LNTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
780 790 800 810 820 830
840 850 860 870 880 890
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
840 850 860 870 880 890
900 910 920 930 940
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940 950
>>NP_061730 (OMIM: 606310) protocadherin alpha-4 isoform (947 aa)
initn: 3980 init1: 2688 opt: 4991 Z-score: 3948.2 bits: 741.9 E(85289): 3.5e-213
Smith-Waterman score: 4991; 81.9% identity (91.5% similar) in 943 aa overlap (8-949:8-947)
10 20 30 40 50 60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
: . :: : :::: ::.:.::::::::::::::::::::::::::::::::
NP_061 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
:::::::: .: ::::::::::::::::::::::: .:::::::::::::::::::::.
NP_061 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
:::.::::::::: ...: ::::. :::::::::::::: :::::::::: ::::::
NP_061 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
..: . . .: :.:::.::::::..::. :.:::::::::::::::.::. :::.::: :
NP_061 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
::.. ::: :.::. . :::.::::.: :::.::...::. . :.:: . : .: .:
NP_061 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
.. :.: .:.::.: :.: :.. ::: :..::: : ::. :.::: :.. :::::.:
NP_061 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
::: .::::::::::.: :::: :::::: :::::::::::::::::::::::::.: :
NP_061 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::.:.::::::::::::::::::::::::::::::::::.::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
:::::.::::::::::::::::::::: .::..::::..::: :::.:::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
:::::::::::::..::.:::::::::::::::::::::.:.::::::::::::::::::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
:::::::::::::::::::::.:.::..:.:::::::::::::::.::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
: :: :::::::::::::::: :::::::::::: :::: :::::::::::::::: .
NP_061 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
..:.. . : . ..::::::::::::::::::::::::::::::::::::::::::
NP_061 DREDQLQTTEESF---AKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830
840 850 860 870 880 890
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
840 850 860 870 880 890
900 910 920 930 940
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940
>>NP_061724 (OMIM: 606316) protocadherin alpha-10 isofor (948 aa)
initn: 2431 init1: 2431 opt: 4967 Z-score: 3929.3 bits: 738.4 E(85289): 4e-212
Smith-Waterman score: 4967; 82.1% identity (91.6% similar) in 942 aa overlap (9-949:8-948)
10 20 30 40 50 60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
::. : : :::: :::::::::::: :::.::::::::::::::::::::
NP_061 MVSRCSCLGVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELV
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
::::::::: :::::::::::::::::::::::::::.:.:::::::::::::::::::.
NP_061 QRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
::::::::::: ::. :::: : ::. :::::::::::::. :::::::.:: :::: :
NP_061 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
: .. . : :.:.: ::::..:.:.::::::::::::.::.: ::. :::.::: :
NP_061 DIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAP
180 190 200 210 220 230
250 260 270 280 290
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
::. :.:...:: ...:::..:::.: :::.: :. ::. : . :. :. : ... .:
NP_061 IFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
:..:: ..:.:... :.:.:..::::.:::.::::: ::.:: ::::::: ::::::::.
NP_061 EIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVK
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
:::: .::::::::::.:::.:::::::::::::::::::.::::::::::::::: : :
NP_061 EDAQVGTVIALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSA
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::: ::::: ::::::::::::::::: :::::::::::::::::::::
NP_061 YELVVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAW
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::::.:.::::::::::::::::::::::::::::::::::::.
NP_061 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDG
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
:::::.::.::::::::::::::::::. ::::::::..:: ::: ::::::::::::::
NP_061 GVPPLGSNLTLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDAD
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
:::::::::::: :: :.:::::::::::::::::::::.::::.::::::::::::.::
NP_061 SGYNAWLSYELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLT
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
:::::::::::..::::::::. .:.: ::.::::::::::::::.::::::::::::::
NP_061 ATATVLVSLVEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTA
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
: ::.::::::.: ::::::: ::::::::::::::::: :: ::.::::::::::
NP_061 LRCSAAPTEGACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCP
720 730 740 750 760 770
780 790 800 810 820 830
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
. .:: : :..: .::::::::::::::::::::::::::::::::::::::::::
NP_061 MVDVDGEDQSIGGDHSRKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
780 790 800 810 820 830
840 850 860 870 880 890
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
840 850 860 870 880 890
900 910 920 930 940
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940
>>NP_061728 (OMIM: 606308) protocadherin alpha-2 isoform (948 aa)
initn: 4966 init1: 2662 opt: 4963 Z-score: 3926.1 bits: 737.8 E(85289): 6e-212
Smith-Waterman score: 4963; 81.6% identity (91.5% similar) in 945 aa overlap (6-949:6-948)
10 20 30 40 50 60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
::: :. : :::: ::::::::.::: :::::::::::::::::::: :::
NP_061 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
:::::::: :::::::::::::::::::::::::::.:::::::.:::::::::::::.
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
:::::::::::.: . . . . ::. :::::::::::::: ::::.:.::..:.: :
NP_061 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
: .: . . :::.: ::::::.: :.::::.:::::::::::::..:..:::::::.:
NP_061 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
: .: :::.:.::.:. :::.::::.: ::: :.:..::: : .. . . ::.: .:
NP_061 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
:.:..: ::::: : :.:.: ::::::: :.::: . ....: :::.:::..::::::.
NP_061 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
:.:. .::::::.:::::::.::.::::::::::::::::::::::::::::::::.: :
NP_061 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::. ::.::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::.:.::::::::::::::::::::::::::.::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
:::::.::::::::::::::::::::: .::.:.:::..::: :::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
:::::::::::: ..:..::::::::::::::::::::::::::::::::::::::::::
NP_061 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
:::::::::::::::::::::. .:::. ::.:::::::::::::.::::::::.:::::
NP_061 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
: :. ::::: :::::::::: ::::::::::::::::: : ::::::::::::: :
NP_061 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
.. :: .: :.. :.::::::::::::::::::::::::::::::::::::::::::
NP_061 DSAEE--KQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830
840 850 860 870 880 890
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
840 850 860 870 880 890
900 910 920 930 940
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940
>>NP_061729 (OMIM: 606309) protocadherin alpha-3 isoform (950 aa)
initn: 4940 init1: 3727 opt: 4940 Z-score: 3907.9 bits: 734.5 E(85289): 6.2e-211
Smith-Waterman score: 4940; 81.2% identity (91.0% similar) in 946 aa overlap (6-949:6-950)
10 20 30 40 50 60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
:. :. : : :::: ::::::::::::::::::::::::::::::::::::
NP_061 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
:::::::: :::::::::::::::::::::::::::.:::::::::::::::::::::.
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
::::::::: ::: . ..:.:.::.: ::: ::::::::: :.:::: :...:::.:
NP_061 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
: : ..:: :.:.:::.:.:: ::. ::.:: ::::::::::..: . ::::::: :
NP_061 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
:... ::: :.::: . :::. .:::: ::::: ...::. . .. . : :: ::
NP_061 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
.. :.:..:.::.: :.:.:.:::::.:::. :::: .::.: ::: ::... ::::::
NP_061 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
::. :::::::::::::::::::::::::::::::::::::::::::::: ::::.: :
NP_061 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::: :::::::::::::::.: ::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::.:.:::::::::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
:::::.:::::::::::::::::::: ..:. ::::..:::::::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
:::::::::::::..::.:::::::::::::::::::::.:.:::::::::::::::.::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
::::::::::::::::::::.. :::..:::::::::::::.:::.::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLP-LG
: :: :::: :.::::::::: :::::::::::.::::: :: :::::::::::::
NP_061 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
.....: :.:. . ..:::::::::::::::::::::::::::::::::::::::::
NP_061 ISRDRE-EKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
790 800 810 820 830
840 850 860 870 880 890
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
840 850 860 870 880 890
900 910 920 930 940
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940 950
949 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:53:28 2016 done: Thu Nov 3 12:53:30 2016
Total Scan time: 13.300 Total Display time: 0.430
Function used was FASTA [36.3.4 Apr, 2011]