Result of FASTA (ccds) for
pFN21AB3107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3107, 165 aa
1>>>pF1KB3107 165 - 165 aa - 165 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7607+/-0.000614; mu= 10.9052+/- 0.037
mean_var=97.5003+/-20.013, 0's: 0 Z-trim(114.7): 120 B-trim: 0 in 0/51
Lambda= 0.129889
statistics sampled from 15083 (15224) to 15083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.468), width: 16
Scan time: 1.800
The best scores are: opt bits E(32554)
CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 ( 165) 1202 234.3 2.5e-62
CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 ( 155) 554 112.9 8.6e-26
CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 ( 156) 554 112.9 8.6e-26
CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 ( 145) 539 110.1 5.7e-25
CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 ( 156) 539 110.1 6.1e-25
CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 ( 163) 539 110.1 6.3e-25
CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11 ( 158) 451 93.6 5.6e-20
CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11 ( 227) 451 93.7 7.4e-20
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 427 89.4 2.5e-18
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 426 89.2 2.8e-18
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 426 89.3 2.9e-18
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 417 87.6 9.5e-18
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 405 85.3 4.4e-17
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 405 85.3 4.5e-17
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 395 83.4 1.5e-16
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 388 82.1 4.1e-16
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 ( 346) 387 81.9 4.1e-16
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 ( 356) 387 81.9 4.2e-16
CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 ( 363) 382 81.0 8.2e-16
CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 ( 366) 382 81.0 8.3e-16
CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 ( 377) 382 81.0 8.4e-16
CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 ( 392) 382 81.0 8.7e-16
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 380 80.6 1.2e-15
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 376 79.8 1.7e-15
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 369 78.6 4.7e-15
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 369 78.6 4.8e-15
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 369 78.6 4.8e-15
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 363 77.4 1e-14
>>CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 (165 aa)
initn: 1202 init1: 1202 opt: 1202 Z-score: 1232.4 bits: 234.3 E(32554): 2.5e-62
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
70 80 90 100 110 120
130 140 150 160
pF1KB3 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
:::::::::::::::::::::::::::::::::::::::::::::
CCDS71 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
130 140 150 160
>>CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 (155 aa)
initn: 638 init1: 554 opt: 554 Z-score: 576.5 bits: 112.9 E(32554): 8.6e-26
Smith-Waterman score: 554; 52.3% identity (78.8% similar) in 132 aa overlap (21-152:21-152)
10 20 30 40 50 60
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
: ::::. :: ::.:: :.:.::: ::::.::. .::..
CCDS58 MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
:.. :::...:::: ::.::::..: :.::.. ::: :.::::. ::::: ::.:. : .
CCDS58 GSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQ
70 80 90 100 110 120
130 140 150 160
pF1KB3 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
:. ::.: :. ..:. : . .:: ..:
CCDS58 RFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
130 140 150
>>CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 (156 aa)
initn: 638 init1: 554 opt: 554 Z-score: 576.5 bits: 112.9 E(32554): 8.6e-26
Smith-Waterman score: 554; 52.3% identity (78.8% similar) in 132 aa overlap (21-152:22-153)
10 20 30 40 50
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGD
: ::::. :: ::.:: :.:.::: ::::.::. .::.
CCDS44 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 IGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCR
.:.. :::...:::: ::.::::..: :.::.. ::: :.::::. ::::: ::.:. :
CCDS44 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 NRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
.:. ::.: :. ..:. : . .:: ..:
CCDS44 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
130 140 150
>>CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 (145 aa)
initn: 546 init1: 508 opt: 539 Z-score: 561.7 bits: 110.1 E(32554): 5.7e-25
Smith-Waterman score: 539; 53.2% identity (78.6% similar) in 126 aa overlap (21-146:11-136)
10 20 30 40 50 60
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
: ::::. :: ::.:: :.:.::: ::::.::. .::..
CCDS86 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEV
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
:.. :::...:::: ::.:::: .: :.::.. ::: :.::::. ::::: ::.:. : .
CCDS86 GSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQ
60 70 80 90 100 110
130 140 150 160
pF1KB3 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
:. ::.: :. ..:. : .:.
CCDS86 RFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
120 130 140
>>CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 (156 aa)
initn: 546 init1: 508 opt: 539 Z-score: 561.3 bits: 110.1 E(32554): 6.1e-25
Smith-Waterman score: 539; 53.2% identity (78.6% similar) in 126 aa overlap (21-146:22-147)
10 20 30 40 50
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGD
: ::::. :: ::.:: :.:.::: ::::.::. .::.
CCDS58 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 IGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCR
.:.. :::...:::: ::.:::: .: :.::.. ::: :.::::. ::::: ::.:. :
CCDS58 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 NRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
.:. ::.: :. ..:. : .:.
CCDS58 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
130 140 150
>>CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 (163 aa)
initn: 549 init1: 511 opt: 539 Z-score: 561.0 bits: 110.1 E(32554): 6.3e-25
Smith-Waterman score: 539; 53.2% identity (78.6% similar) in 126 aa overlap (21-146:29-154)
10 20 30 40 50
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSC
: ::::. :: ::.:: :.:.::: ::::.:
CCDS58 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 CQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKC
:. .::..:.. :::...:::: ::.:::: .: :.::.. ::: :.::::. ::::: :
CCDS58 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 FTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
:.:. : .:. ::.: :. ..:. : .:.
CCDS58 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
130 140 150 160
>>CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11 (158 aa)
initn: 486 init1: 436 opt: 451 Z-score: 472.1 bits: 93.6 E(32554): 5.6e-20
Smith-Waterman score: 451; 43.4% identity (69.2% similar) in 143 aa overlap (9-150:22-158)
10 20 30 40
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRC
: :: : :.:: .:.::..: :.:.::: :
CCDS44 MSSAIERKSLDPSEEPVDEVLQIPP------SLLTCGGCQQNIGDRYFLKAIDQYWHEDC
10 20 30 40 50
50 60 70 80 90 100
pF1KB3 LKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNV
:.:. : .::..: : : : ::: ::.::::..: :..: . : : :..::.. .:
CCDS44 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKV
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB3 YHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD-RPTALINGHLNSLQSNPLLPDQKVC
:::.:: :..:.... :::. ::... ::.: . ::: .
CCDS44 YHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
120 130 140 150
>>CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11 (227 aa)
initn: 511 init1: 436 opt: 451 Z-score: 470.0 bits: 93.7 E(32554): 7.4e-20
Smith-Waterman score: 451; 43.4% identity (69.2% similar) in 143 aa overlap (9-150:91-227)
10 20 30
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYA
: :: : :.:: .:.::..: :
CCDS78 PPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPP------SLLTCGGCQQNIGDRYFLKA
70 80 90 100 110
40 50 60 70 80 90
pF1KB3 MDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE
.:.::: ::.:. : .::..: : : : ::: ::.::::..: :..: . : : :
CCDS78 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB3 LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD-RPTALINGHLNSLQSNP
..::.. .::::.:: :..:.... :::. ::... ::.: . ::: .
CCDS78 MTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
180 190 200 210 220
160
pF1KB3 LLPDQKVC
>>CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 (390 aa)
initn: 335 init1: 178 opt: 427 Z-score: 442.5 bits: 89.4 E(32554): 2.5e-18
Smith-Waterman score: 427; 43.3% identity (73.2% similar) in 127 aa overlap (22-147:29-150)
10 20 30 40 50
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCC
.::::. .: :.:.: ..: .::: ::::. :
CCDS13 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 QAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCF
: ::.: :....: . :..:... ::.. :.:: :.:: ...: .:: ::::.::
CCDS13 QMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCF
70 80 90 100 110
120 130 140 150 160
pF1KB3 TCSTCRNRLVPGDRFHYI-NGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
.: : .:. ::.:. . .: : :..: :: :
CCDS13 ACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA
120 130 140 150 160 170
CCDS13 YKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSR
180 190 200 210 220 230
>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa)
initn: 426 init1: 185 opt: 426 Z-score: 441.5 bits: 89.2 E(32554): 2.8e-18
Smith-Waterman score: 426; 44.0% identity (68.1% similar) in 141 aa overlap (5-145:46-182)
10 20 30
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRF
: .. ::.. . . ::::::::.::.
CCDS30 ISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPAL--CAGCGGKISDRY
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB3 LLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSI
: :.:. :: ::::: :. : . .:..:.: : :..:: : : . :. : .:
CCDS30 YLLAVDKQWHLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGI
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB3 PASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQ
:::.::::. .::::.::::::: . :. ::.: . .. ..:. : :
CCDS30 SASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLS
140 150 160 170 180 190
160
pF1KB3 SNPLLPDQKVC
CCDS30 YTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQP
200 210 220 230 240 250
165 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:27:22 2016 done: Thu Nov 3 12:27:23 2016
Total Scan time: 1.800 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]