Result of FASTA (omim) for
pFN21AB3106
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3106, 837 aa
1>>>pF1KB3106 837 - 837 aa - 837 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6237+/-0.000433; mu= 15.3237+/- 0.027
mean_var=121.6895+/-24.531, 0's: 0 Z-trim(113.6): 62 B-trim: 301 in 1/55
Lambda= 0.116265
statistics sampled from 22989 (23046) to 22989 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.27), width: 16
Scan time: 12.940
The best scores are: opt bits E(85289)
NP_036275 (OMIM: 612747) tuftelin-interacting prot ( 837) 5739 974.7 0
XP_016884224 (OMIM: 612747) PREDICTED: tuftelin-in ( 837) 5739 974.7 0
XP_011528381 (OMIM: 612747) PREDICTED: tuftelin-in ( 837) 5739 974.7 0
NP_001008697 (OMIM: 612747) tuftelin-interacting p ( 837) 5739 974.7 0
XP_011542291 (OMIM: 300080,311900) PREDICTED: RNA- ( 618) 183 42.7 0.0062
XP_016885374 (OMIM: 300080,311900) PREDICTED: RNA- ( 726) 183 42.7 0.0071
XP_006724626 (OMIM: 300080,311900) PREDICTED: RNA- ( 727) 183 42.7 0.0071
XP_016885373 (OMIM: 300080,311900) PREDICTED: RNA- ( 727) 183 42.7 0.0071
NP_690595 (OMIM: 300080,311900) RNA-binding protei ( 852) 183 42.8 0.008
NP_001191395 (OMIM: 300080,311900) RNA-binding pro ( 853) 183 42.8 0.008
XP_005272736 (OMIM: 300080,311900) PREDICTED: RNA- ( 917) 183 42.8 0.0084
XP_005272735 (OMIM: 300080,311900) PREDICTED: RNA- ( 918) 183 42.8 0.0085
NP_001191396 (OMIM: 300080,311900) RNA-binding pro ( 929) 183 42.8 0.0085
NP_005667 (OMIM: 300080,311900) RNA-binding protei ( 930) 183 42.8 0.0085
XP_005272734 (OMIM: 300080,311900) PREDICTED: RNA- ( 994) 183 42.8 0.009
NP_001191397 (OMIM: 300080,311900) RNA-binding pro ( 995) 183 42.8 0.009
>>NP_036275 (OMIM: 612747) tuftelin-interacting protein (837 aa)
initn: 5739 init1: 5739 opt: 5739 Z-score: 5208.4 bits: 974.7 E(85289): 0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)
10 20 30 40 50 60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
730 740 750 760 770 780
790 800 810 820 830
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
790 800 810 820 830
>>XP_016884224 (OMIM: 612747) PREDICTED: tuftelin-intera (837 aa)
initn: 5739 init1: 5739 opt: 5739 Z-score: 5208.4 bits: 974.7 E(85289): 0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)
10 20 30 40 50 60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
730 740 750 760 770 780
790 800 810 820 830
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
790 800 810 820 830
>>XP_011528381 (OMIM: 612747) PREDICTED: tuftelin-intera (837 aa)
initn: 5739 init1: 5739 opt: 5739 Z-score: 5208.4 bits: 974.7 E(85289): 0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)
10 20 30 40 50 60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
730 740 750 760 770 780
790 800 810 820 830
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
790 800 810 820 830
>>NP_001008697 (OMIM: 612747) tuftelin-interacting prote (837 aa)
initn: 5739 init1: 5739 opt: 5739 Z-score: 5208.4 bits: 974.7 E(85289): 0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)
10 20 30 40 50 60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
730 740 750 760 770 780
790 800 810 820 830
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
790 800 810 820 830
>>XP_011542291 (OMIM: 300080,311900) PREDICTED: RNA-bind (618 aa)
initn: 177 init1: 150 opt: 183 Z-score: 173.6 bits: 42.7 E(85289): 0.0062
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:425-602)
10 20 30
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
:.: . . :::. ..:::. .
XP_011 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
400 410 420 430 440 450
40 50 60 70 80 90
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
:: . .:: . .. : .. .. .: : : . : :.:. :. . .:
XP_011 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
460 470 480 490 500
100 110 120 130 140 150
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
:.. .. .:. :.. : :: .. .. : :.. .:: .::...::
XP_011 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
510 520 530 540 550
160 170 180 190 200 210
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
::. : :::.. :::..::::. : .:.: .:: :: . : ...
XP_011 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
560 570 580 590 600 610
220 230 240 250 260 270
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
XP_011 NEAQ
>>XP_016885374 (OMIM: 300080,311900) PREDICTED: RNA-bind (726 aa)
initn: 177 init1: 150 opt: 183 Z-score: 172.6 bits: 42.7 E(85289): 0.0071
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:533-710)
10 20 30
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
:.: . . :::. ..:::. .
XP_016 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
510 520 530 540 550 560
40 50 60 70 80 90
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
:: . .:: . .. : .. .. .: : : . : :.:. :. . .:
XP_016 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
570 580 590 600 610
100 110 120 130 140 150
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
:.. .. .:. :.. : :: .. .. : :.. .:: .::...::
XP_016 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
620 630 640 650 660
160 170 180 190 200 210
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
::. : :::.. :::..::::. : .:.: .:: :: . : ...
XP_016 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
670 680 690 700 710 720
220 230 240 250 260 270
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
XP_016 NEAQ
>>XP_006724626 (OMIM: 300080,311900) PREDICTED: RNA-bind (727 aa)
initn: 177 init1: 150 opt: 183 Z-score: 172.6 bits: 42.7 E(85289): 0.0071
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:534-711)
10 20 30
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
:.: . . :::. ..:::. .
XP_006 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
510 520 530 540 550 560
40 50 60 70 80 90
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
:: . .:: . .. : .. .. .: : : . : :.:. :. . .:
XP_006 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
570 580 590 600 610
100 110 120 130 140 150
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
:.. .. .:. :.. : :: .. .. : :.. .:: .::...::
XP_006 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
620 630 640 650 660
160 170 180 190 200 210
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
::. : :::.. :::..::::. : .:.: .:: :: . : ...
XP_006 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
670 680 690 700 710 720
220 230 240 250 260 270
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
XP_006 NEAQ
>>XP_016885373 (OMIM: 300080,311900) PREDICTED: RNA-bind (727 aa)
initn: 177 init1: 150 opt: 183 Z-score: 172.6 bits: 42.7 E(85289): 0.0071
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:534-711)
10 20 30
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
:.: . . :::. ..:::. .
XP_016 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
510 520 530 540 550 560
40 50 60 70 80 90
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
:: . .:: . .. : .. .. .: : : . : :.:. :. . .:
XP_016 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
570 580 590 600 610
100 110 120 130 140 150
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
:.. .. .:. :.. : :: .. .. : :.. .:: .::...::
XP_016 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
620 630 640 650 660
160 170 180 190 200 210
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
::. : :::.. :::..::::. : .:.: .:: :: . : ...
XP_016 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
670 680 690 700 710 720
220 230 240 250 260 270
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
XP_016 NEAQ
>>NP_690595 (OMIM: 300080,311900) RNA-binding protein 10 (852 aa)
initn: 150 init1: 150 opt: 183 Z-score: 171.7 bits: 42.8 E(85289): 0.008
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:659-836)
10 20 30
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
:.: . . :::. ..:::. .
NP_690 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
630 640 650 660 670 680
40 50 60 70 80 90
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
:: . .:: . .. : .. .. .: : : . : :.:. :. . .:
NP_690 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
690 700 710 720 730
100 110 120 130 140 150
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
:.. .. .:. :.. : :: .. .. : :.. .:: .::...::
NP_690 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
740 750 760 770 780
160 170 180 190 200 210
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
::. : :::.. :::..::::. : .:.: .:: :: . : ...
NP_690 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
790 800 810 820 830 840
220 230 240 250 260 270
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
NP_690 NEAQ
850
>>NP_001191395 (OMIM: 300080,311900) RNA-binding protein (853 aa)
initn: 150 init1: 150 opt: 183 Z-score: 171.7 bits: 42.8 E(85289): 0.008
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:660-837)
10 20 30
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
:.: . . :::. ..:::. .
NP_001 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
630 640 650 660 670 680
40 50 60 70 80 90
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
:: . .:: . .. : .. .. .: : : . : :.:. :. . .:
NP_001 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
690 700 710 720 730 740
100 110 120 130 140 150
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
:.. .. .:. :.. : :: .. .. : :.. .:: .::...::
NP_001 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
750 760 770 780 790
160 170 180 190 200 210
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
::. : :::.. :::..::::. : .:.: .:: :: . : ...
NP_001 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
800 810 820 830 840
220 230 240 250 260 270
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
NP_001 NEAQ
850
837 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:26:48 2016 done: Thu Nov 3 12:26:50 2016
Total Scan time: 12.940 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]