Result of FASTA (ccds) for
pFN21AA1221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1221, 1327 aa
1>>>pF1KA1221 1327 - 1327 aa - 1327 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.4160+/-0.00177; mu= -6.6983+/- 0.102
mean_var=444.6079+/-120.513, 0's: 0 Z-trim(105.4): 161 B-trim: 887 in 2/50
Lambda= 0.060825
statistics sampled from 8280 (8379) to 8280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.257), width: 16
Scan time: 4.830
The best scores are: opt bits E(32554)
CCDS731.1 ZNF644 gene_id:84146|Hs108|chr1 (1327) 8826 791.4 0
CCDS732.1 ZNF644 gene_id:84146|Hs108|chr1 ( 105) 644 72.3 7.7e-13
>>CCDS731.1 ZNF644 gene_id:84146|Hs108|chr1 (1327 aa)
initn: 8826 init1: 8826 opt: 8826 Z-score: 4210.6 bits: 791.4 E(32554): 0
Smith-Waterman score: 8826; 100.0% identity (100.0% similar) in 1327 aa overlap (1-1327:1-1327)
10 20 30 40 50 60
pF1KA1 MRSFLQQDVNKTKSRLNVLNGLANNMDDLKINTDITGAKEELLDDNNFISDKESGVHKPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MRSFLQQDVNKTKSRLNVLNGLANNMDDLKINTDITGAKEELLDDNNFISDKESGVHKPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 DCQTSFQKNNTLTLPEELSKDKSENALSGGQSSLFIHAGAPTVSSENFILPKGAAVNGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DCQTSFQKNNTLTLPEELSKDKSENALSGGQSSLFIHAGAPTVSSENFILPKGAAVNGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SHSSLTKTSNMNKGSVSLTTGQPVDQPTTESCSTLKVAADLQLSTPQKASQHQVLFLLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SHSSLTKTSNMNKGSVSLTTGQPVDQPTTESCSTLKVAADLQLSTPQKASQHQVLFLLSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 VAHAKNPTHSNKKLPTSASVGCDIQNSVGSNIKSDGTLINQVEVGEDGEDLLVKDDCVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VAHAKNPTHSNKKLPTSASVGCDIQNSVGSNIKSDGTLINQVEVGEDGEDLLVKDDCVNT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 VTGISSGTDGFRSENDTNWDPQKEFIQFLMTNEETVDKAPPHSKIGLEKKRKRKMDVSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VTGISSGTDGFRSENDTNWDPQKEFIQFLMTNEETVDKAPPHSKIGLEKKRKRKMDVSKI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 TRYTEDCFSDSNCVPNKSKMQEVDFLEQNEELQAVDSQKYALSKVKPESTDEDLESVDAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TRYTEDCFSDSNCVPNKSKMQEVDFLEQNEELQAVDSQKYALSKVKPESTDEDLESVDAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 QHLIYNPDKCGEESSPVHTSTFLSNTLKKKCEESDSESPATFSTEEPSFYPCTKCNVNFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QHLIYNPDKCGEESSPVHTSTFLSNTLKKKCEESDSESPATFSTEEPSFYPCTKCNVNFR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 EKKHLHRHMMYHLDGNSHFRHLNVPRPYACRECGRTFRDRNSLLKHMIIHQERRQKLMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EKKHLHRHMMYHLDGNSHFRHLNVPRPYACRECGRTFRDRNSLLKHMIIHQERRQKLMEE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 IRELKELQDEGRSARLQCPQCVFGTNCPKTFVQHAKTHEKDKRYYCCEECNFMAVTENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IRELKELQDEGRSARLQCPQCVFGTNCPKTFVQHAKTHEKDKRYYCCEECNFMAVTENEL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 ECHRGIAHGAVVKCPMVTSDIAQRKTQKKTFMKDSVVGSSKKSATYICKMCPFTTSAKSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ECHRGIAHGAVVKCPMVTSDIAQRKTQKKTFMKDSVVGSSKKSATYICKMCPFTTSAKSV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 LKKHTEYLHSSSCVDSFGSPLGLDKRKNDILEEPVDSDSTKTLTKQQSTTFPKNSALKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LKKHTEYLHSSSCVDSFGSPLGLDKRKNDILEEPVDSDSTKTLTKQQSTTFPKNSALKQD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 VKRTFGSTSQSSSFSKIHKRPHRIQKARKSIAQSGVNMCNQNSSPHKNVTIKSSVDQKPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VKRTFGSTSQSSSFSKIHKRPHRIQKARKSIAQSGVNMCNQNSSPHKNVTIKSSVDQKPK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 YFHQAAKEKSNAKANSHYLYRHKYENYRMIKKSGESYPVHFKKEEASSLNSLHLFSSSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YFHQAAKEKSNAKANSHYLYRHKYENYRMIKKSGESYPVHFKKEEASSLNSLHLFSSSSN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 SHNNFISDPHKPDAKRPESFKDHRRVAVKRVIKESKKESSVGGEDLDSYPDFLHKMTVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SHNNFISDPHKPDAKRPESFKDHRRVAVKRVIKESKKESSVGGEDLDSYPDFLHKMTVVV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 LQKLNSAEKKDSYETEDESSWDNVELGDYTTQAIEDETYSDINQEHVNLFPLFKSKVEGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LQKLNSAEKKDSYETEDESSWDNVELGDYTTQAIEDETYSDINQEHVNLFPLFKSKVEGQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 EPGENATLSYDQNDGFYFEYYEDTGSNNFLHEIHDPQHLETADASLSKHSSVFHWTDLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EPGENATLSYDQNDGFYFEYYEDTGSNNFLHEIHDPQHLETADASLSKHSSVFHWTDLSL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 EKKSCPYCPATFETGVGLSNHVRGHLHRAGLSYEARHVVSPEQIATSDKMQHFKRTGTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EKKSCPYCPATFETGVGLSNHVRGHLHRAGLSYEARHVVSPEQIATSDKMQHFKRTGTGT
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 PVKRVRKAIEKSETTSEHTCQLCGGWFDTKIGLSNHVRGHLKRLGKTKWDAHKSPICVLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PVKRVRKAIEKSETTSEHTCQLCGGWFDTKIGLSNHVRGHLKRLGKTKWDAHKSPICVLN
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 EMMQNEEKYEKILKALNSRRIIPRPFVAQKLASSDDFISQNVIPLEAYRNGLKTEALSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EMMQNEEKYEKILKALNSRRIIPRPFVAQKLASSDDFISQNVIPLEAYRNGLKTEALSVS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 ASEEEGLNFLNEYDETKPELPSGKKNQSLTLIELLKNKRMGEERNSAISPQKIHNQTARK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ASEEEGLNFLNEYDETKPELPSGKKNQSLTLIELLKNKRMGEERNSAISPQKIHNQTARK
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA1 RFVQKCVLPLNEDSPLMYQPQKMDLTMHSALDCKQKKSRSRSGSKKKMLTLPHGADEVYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RFVQKCVLPLNEDSPLMYQPQKMDLTMHSALDCKQKKSRSRSGSKKKMLTLPHGADEVYI
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA1 LRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTGAGMVEVTSLLKKPASITETSFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTGAGMVEVTSLLKKPASITETSFSL
1270 1280 1290 1300 1310 1320
pF1KA1 LMAEAAS
:::::::
CCDS73 LMAEAAS
>>CCDS732.1 ZNF644 gene_id:84146|Hs108|chr1 (105 aa)
initn: 642 init1: 642 opt: 644 Z-score: 344.0 bits: 72.3 E(32554): 7.7e-13
Smith-Waterman score: 644; 94.3% identity (97.1% similar) in 105 aa overlap (1223-1327:1-105)
1200 1210 1220 1230 1240 1250
pF1KA1 IHNQTARKRFVQKCVLPLNEDSPLMYQPQKMDLTMHSALDCKQKKSRSRSGSKKKMLTLP
: . .. :::::::::::::::::::::::
CCDS73 MLIRQNLALDCKQKKSRSRSGSKKKMLTLP
10 20 30
1260 1270 1280 1290 1300 1310
pF1KA1 HGADEVYILRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTGAGMVEVTSLLKKPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HGADEVYILRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTGAGMVEVTSLLKKPAS
40 50 60 70 80 90
1320
pF1KA1 ITETSFSLLMAEAAS
:::::::::::::::
CCDS73 ITETSFSLLMAEAAS
100
1327 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 10:50:51 2016 done: Thu Nov 3 10:50:52 2016
Total Scan time: 4.830 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]