Result of FASTA (ccds) for
pFN21AA0594
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0594, 1101 aa
1>>>pF1KA0594 1101 - 1101 aa - 1101 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.2385+/-0.00143; mu= -0.3810+/- 0.085
mean_var=287.9277+/-60.825, 0's: 0 Z-trim(107.6): 92 B-trim: 0 in 0/51
Lambda= 0.075584
statistics sampled from 9602 (9668) to 9602 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.297), width: 16
Scan time: 4.980
The best scores are: opt bits E(32554)
CCDS6632.1 SMC5 gene_id:23137|Hs108|chr9 (1101) 7172 797.1 0
>>CCDS6632.1 SMC5 gene_id:23137|Hs108|chr9 (1101 aa)
initn: 7172 init1: 7172 opt: 7172 Z-score: 4244.1 bits: 797.1 E(32554): 0
Smith-Waterman score: 7172; 99.9% identity (100.0% similar) in 1101 aa overlap (1-1101:1-1101)
10 20 30 40 50 60
pF1KA0 MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQSSGPFVEGSIVRISMEN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 FLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 GMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 QDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 QRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 EGQIPITCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALI
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EGQIPVTCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 VKQNEELDRQRRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VKQNEELDRQRRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 IIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 VCEPIMLTINMKDNKNAKYIENHIPSNDLRAFVFESQEDMEVFLKEVRDNKKLRVNAVIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VCEPIMLTINMKDNKNAKYIENHIPSNDLRAFVFESQEDMEVFLKEVRDNKKLRVNAVIA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 PKSSYADKAPSRSLNELKQYGFFSYLRELFDAPDPVMSYLCCQYHIHEVPVGTEKTRERI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PKSSYADKAPSRSLNELKQYGFFSYLRELFDAPDPVMSYLCCQYHIHEVPVGTEKTRERI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 ERVIQETRLKQIYTAEEKYVVKTSFYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ERVIQETRLKQIYTAEEKYVVKTSFYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 EIHRKLQAVDSGLIALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKISSKLGSLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EIHRKLQAVDSGLIALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKISSKLGSLKL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 MEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSLHIQKVDLILQNTTVISE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSLHIQKVDLILQNTTVISE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 KNKLESDYMAASSQLRLTEQHFIELDENRQRLLQKCKELMKRARQVCNLGAEQTLPQEYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KNKLESDYMAASSQLRLTEQHFIELDENRQRLLQKCKELMKRARQVCNLGAEQTLPQEYQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 TQVPTIPNGHNSSLPMVFQDLPNTLDEIDALLTEERSRASCFTGLNPTIVQEYTKREEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TQVPTIPNGHNSSLPMVFQDLPNTLDEIDALLTEERSRASCFTGLNPTIVQEYTKREEEI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 EQLTEELKGKKVELDQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EQLTEELKGKKVELDQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHT
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 ENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDE
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 INQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFVYNGPHMLEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 INQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFVYNGPHMLEP
1030 1040 1050 1060 1070 1080
1090 1100
pF1KA0 NTWNLKAFQRRRRRITFTQPS
:::::::::::::::::::::
CCDS66 NTWNLKAFQRRRRRITFTQPS
1090 1100
1101 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 09:49:30 2016 done: Thu Nov 3 09:49:31 2016
Total Scan time: 4.980 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]