FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0021, 327 aa
  1>>>pF1KSDB0021 327 - 327 aa - 327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9029+/-0.000853; mu= -1.1541+/- 0.052
 mean_var=342.0490+/-67.443, 0's: 0 Z-trim(118.5): 7  B-trim: 0 in 0/53
 Lambda= 0.069347
 statistics sampled from 19473 (19479) to 19473 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.598), width:  16
 Scan time:  3.440

The best scores are:                                      opt bits E(32554)
CCDS1343.1 IER5 gene_id:51278|Hs108|chr1           ( 327) 2321 244.9 6.7e-65


>>CCDS1343.1 IER5 gene_id:51278|Hs108|chr1                (327 aa)
 initn: 2321 init1: 2321 opt: 2321  Z-score: 1278.6  bits: 244.9 E(32554): 6.7e-65
Smith-Waterman score: 2321; 99.7% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KSD MEFKLEAHRIVSISLGKIYNSRVQRGGIKLHKNLLVSLVLRSARQVYLSDPCPGLYLAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEFKLEAHRIVSISLGKIYNSRVQRGGIKLHKNLLVSLVLRSARQVYLSDPCPGLYLAGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD AGTPAPPPQQQPGEPAAGPPAGWGEPPPPAARASWPETEPQPERSSVSDAPRVGDEVPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGTPAPPPQQQPGEPAAGPPAGWGEPPPPAARASWPETEPQPERSSVSDAPRVGDEVPVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD TVTGVGDVFQGGEADATEAAWSRVEGPRQAAAREAEGTAGGWGVFPEVSRAARRPCGCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVTGVGDVFQGGEADATEAAWSRVEGPRQAAAREAEGTAGGWGVFPEVSRAARRPCGCPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GGEDPPGTPAATPRAACCCAPRPAEDEPPAPPAVCPRKRCAAGVGGGPAGCPAPGSTPLK
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS13 GGEDPPGTPAATPRAACCCAPQPAEDEPPAPPAVCPRKRCAAGVGGGPAGCPAPGSTPLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KPRRNLEQPPSGGEDDDAEEMETGNVANLISIFGSSFSGLLRKSPGGGREEEEGEESGPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KPRRNLEQPPSGGEDDDAEEMETGNVANLISIFGSSFSGLLRKSPGGGREEEEGEESGPE
              250       260       270       280       290       300

              310       320       
pF1KSD AAEPGQICCDKPVLRDMNPWSTAIVAF
       :::::::::::::::::::::::::::
CCDS13 AAEPGQICCDKPVLRDMNPWSTAIVAF
              310       320       




327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:06:53 2016 done: Thu Nov  3 08:06:54 2016
 Total Scan time:  3.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]