Result of FASTA (ccds) for
pFN21ASDA1674
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1674, 530 aa
1>>>pF1KSDA1674 530 - 530 aa - 530 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1916+/-0.00104; mu= 1.1898+/- 0.062
mean_var=239.9980+/-49.588, 0's: 0 Z-trim(112.0): 42 B-trim: 564 in 1/51
Lambda= 0.082789
statistics sampled from 12812 (12843) to 12812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.395), width: 16
Scan time: 3.150
The best scores are: opt bits E(32554)
CCDS31316.1 LRRC27 gene_id:80313|Hs108|chr10 ( 530) 3467 427.3 2.1e-119
CCDS44495.1 LRRC27 gene_id:80313|Hs108|chr10 ( 383) 2355 294.4 1.6e-79
CCDS44496.1 LRRC27 gene_id:80313|Hs108|chr10 ( 383) 2065 259.8 4.2e-69
>>CCDS31316.1 LRRC27 gene_id:80313|Hs108|chr10 (530 aa)
initn: 3467 init1: 3467 opt: 3467 Z-score: 2257.2 bits: 427.3 E(32554): 2.1e-119
Smith-Waterman score: 3467; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)
10 20 30 40 50 60
pF1KSD MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQALMEQQRREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQALMEQQRREK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMKPSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMKPSKE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KSPQASKEMSALQERNLEEKIKQHVLQMREQRRFHGQAPLEEMRKAAEDLEIATELQDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KSPQASKEMSALQERNLEEKIKQHVLQMREQRRFHGQAPLEEMRKAAEDLEIATELQDEV
430 440 450 460 470 480
490 500 510 520 530
pF1KSD LKLKLGLTLNKDRRRAALTGNLSLGLPAAQPQNTFFNTKYGESGNVRRYQ
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKLKLGLTLNKDRRRAALTGNLSLGLPAAQPQNTFFNTKYGESGNVRRYQ
490 500 510 520 530
>>CCDS44495.1 LRRC27 gene_id:80313|Hs108|chr10 (383 aa)
initn: 2355 init1: 2355 opt: 2355 Z-score: 1541.3 bits: 294.4 E(32554): 1.6e-79
Smith-Waterman score: 2355; 100.0% identity (100.0% similar) in 358 aa overlap (1-358:1-358)
10 20 30 40 50 60
pF1KSD MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQALMEQQRREK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQALMEQQRRPF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMKPSKE
CCDS44 LLIFPRVFQALTRSSGRFILVLL
370 380
>>CCDS44496.1 LRRC27 gene_id:80313|Hs108|chr10 (383 aa)
initn: 2092 init1: 2060 opt: 2065 Z-score: 1354.2 bits: 259.8 E(32554): 4.2e-69
Smith-Waterman score: 2065; 83.5% identity (90.2% similar) in 387 aa overlap (1-383:1-383)
10 20 30 40 50 60
pF1KSD MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEVFRIPSLQQLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LERNPIKMLPVELGSVTTLKALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTSQEAPPVREMTLRDLPSPGLELSGDHASNQGAVNAQDPEGAVMKEKASFLPPVEKPDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGDQLLTRELPPNLKAALNIEKE
250 260 270 280 290 300
310 320 330 340 350
pF1KSD LPKPRHVFRRKTASSRSI--LPDLLSPYQMAI-RAK-RLEESRAAALRELQEKQALMEQQ
::::::::: .. .... : . . . .. :: .. :.: . .
CCDS44 LPKPRHVFRTRVPRKQALQRLHERKTRIMGVVGRAPTHMGEGRQPPPGASYPTSCHRTKW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD RREKRALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMK
: :.. .:. ::.: :... . :.:
CCDS44 RSEQK---DWK-RAERRRSESSRRSRL
370 380
530 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:54:10 2016 done: Thu Nov 3 06:54:11 2016
Total Scan time: 3.150 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]