(Circular) (Six-base) MAPSORT of: pFN21ASDA1519.seq Check: 8607 from: 1 to: 6670 pFN21ASDA1519 6670 bp With 182 enzymes: SgfI * January 16, 2009 15:31 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2409 3834 2409 Size: 1425 5245 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4480 278 Size: 53 83 186 936 2944 2468 Fragments arranged by size: 2944 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 4013 1937 Size: 2076 4594 Acc65I G'GTAC_C Cuts at: 3991 3991 Size: 6670 AclI AA'CG_TT Cuts at: 1563 4797 5170 1563 Size: 3234 373 3063 Fragments arranged by size: 3234 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2096 2656 3755 4733 6117 6385 1632 Size: 464 560 1099 978 1384 268 1917 Fragments arranged by size: 1917 1384 1099 978 560 464 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6473 AflIII A'CryG_T Cuts at: 1203 2904 5569 6546 1203 Size: 1701 2665 977 1327 Fragments arranged by size: 2665 1701 1327 977 AgeI A'CCGG_T Cuts at: 5501 5501 Size: 6670 AhdI GACnn_n'nnGTC Cuts at: 5399 5399 Size: 6670 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6670 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 3356 1184 Size: 2172 4498 AlwNI CAG_nnn'CTG Cuts at: 2245 2422 2584 3321 3659 3745 3784 3838 4413 Size: 177 162 737 338 86 39 54 575 Cuts at: 4413 5985 2245 Size: 1572 2930 Fragments arranged by size: 2930 1572 737 575 338 177 162 86 54 39 ApaLI G'TGCA_C Cuts at: 2396 2557 4727 5883 2396 Size: 161 2170 1156 3183 Fragments arranged by size: 3183 2170 1156 161 ApoI r'AATT_y Cuts at: 1493 3398 3673 3979 4205 4357 6466 1493 Size: 1905 275 306 226 152 2109 1697 Fragments arranged by size: 2109 1905 1697 306 275 226 152 AseI AT'TA_AT Cuts at: 160 1032 5224 160 Size: 872 4192 1606 Fragments arranged by size: 4192 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6670 AvaI C'yCGr_G Cuts at: 1870 1943 2657 3204 3236 3257 3510 3995 1870 Size: 73 714 547 32 21 253 485 4545 Fragments arranged by size: 4545 714 547 485 253 73 32 21 BamHI G'GATC_C Cuts at: 4000 4367 4000 Size: 367 6303 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2986 3991 5446 618 Size: 325 217 627 1199 1005 1455 1842 Fragments arranged by size: 1842 1455 1199 1005 627 325 217 BanII G_rGCy'C Cuts at: 1391 2331 2735 3774 3903 3989 1391 Size: 940 404 1039 129 86 4072 Fragments arranged by size: 4072 1039 940 404 129 86 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 3272 3914 928 Size: 971 1373 642 3684 Fragments arranged by size: 3684 1373 971 642 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3185 3219 4861 4895 1903 Size: 34 1248 34 1642 34 3678 Fragments arranged by size: 3678 1642 1248 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2929 4562 5772 2929 Size: 1633 1210 3827 Fragments arranged by size: 3827 1633 1210 BclI T'GATC_A Cuts at: 1548 1548 Size: 6670 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3278 3948 5281 Size: 107 122 71 631 605 1606 670 1333 Cuts at: 5281 136 Size: 1525 Fragments arranged by size: 1606 1525 1333 670 631 605 122 107 71 BglII A'GATC_T Cuts at: 6665 6665 Size: 6670 BlpI GC'TnA_GC Cuts at: 2051 2106 3489 3839 4087 2051 Size: 55 1383 350 248 4634 Fragments arranged by size: 4634 1383 350 248 55 Bme1580I G_kGCm'C Cuts at: 1790 2400 2561 2893 3111 4731 5887 1790 Size: 610 161 332 218 1620 1156 2573 Fragments arranged by size: 2573 1620 1156 610 332 218 161 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 6670 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 4401 5359 442 Size: 416 53 83 399 24 2984 958 1753 Fragments arranged by size: 2984 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6670 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2713 2713 Size: 6670 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2249 2399 2837 3311 3479 3767 3907 5330 Size: 1010 150 438 474 168 288 140 1423 Cuts at: 5330 1239 Size: 2579 Fragments arranged by size: 2579 1423 1010 474 438 288 168 150 140 Bpu10I CC'TnA_GC Cuts at: 2083 3122 3366 3411 2083 Size: 1039 244 45 5342 Fragments arranged by size: 5342 1039 244 45 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3887 4795 5660 5958 3887 Size: 908 865 298 4599 Fragments arranged by size: 4599 908 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3207 5333 882 Size: 617 1708 2126 2219 Fragments arranged by size: 2219 2126 1708 617 BsaAI yAC'GTr Cuts at: 493 1204 2907 3967 4461 493 Size: 711 1703 1060 494 2702 Fragments arranged by size: 2702 1703 1060 711 494 BsaBI GATnn'nnATC Cuts at: 6664 6664 Size: 6670 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 4477 4859 5494 275 Size: 53 83 186 936 2944 382 635 1451 Fragments arranged by size: 2944 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 5103 5501 5775 5922 6333 5103 Size: 398 274 147 411 5440 Fragments arranged by size: 5440 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2270 2300 2912 2942 2970 Size: 30 165 30 867 30 612 30 28 Cuts at: 2970 3000 3185 3215 3452 3482 1178 Size: 30 185 30 237 30 4366 Fragments arranged by size: 4366 867 612 237 185 165 30 30 30 30 30 30 30 28 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2072 2278 2803 2806 3206 1186 Size: 886 206 525 3 400 4650 Fragments arranged by size: 4650 886 525 400 206 3 BseYI C'CCAG_C Cuts at: 2512 3321 5873 6369 2512 Size: 809 2552 496 2813 Fragments arranged by size: 2813 2552 809 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 3037 3326 3524 3672 1163 Size: 573 1301 289 198 148 4161 Fragments arranged by size: 4161 1301 573 289 198 148 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2431 4120 4881 5909 1540 Size: 275 186 430 1689 761 1028 2301 Fragments arranged by size: 2301 1689 1028 761 430 275 186 BsiHKAI G_wGCw'C Cuts at: 2331 2400 2561 2666 3753 3774 3903 4731 4816 Size: 69 161 105 1087 21 129 828 85 Cuts at: 4816 5887 2331 Size: 1071 3114 Fragments arranged by size: 3114 1087 1071 828 161 129 105 85 69 21 BsmI GAATG_Cn' Cuts at: 2235 3036 3356 4181 4274 2235 Size: 801 320 825 93 4631 Fragments arranged by size: 4631 825 801 320 93 BsmBI CGTCTCn'nnnn_ Cuts at: 2777 3237 3287 2777 Size: 460 50 6160 Fragments arranged by size: 6160 460 50 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2331 2400 2561 2666 2735 2893 3111 Size: 399 541 69 161 105 69 158 218 Cuts at: 3111 3753 3774 3903 3989 4731 4816 5887 1391 Size: 642 21 129 86 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 642 541 399 218 161 158 129 105 86 85 69 69 21 BspEI T'CCGG_A Cuts at: 6333 6333 Size: 6670 BspHI T'CATG_A Cuts at: 4559 6289 4559 Size: 1730 4940 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2409 3324 3834 4025 844 Size: 1565 915 510 191 3489 Fragments arranged by size: 3489 1565 915 510 191 BsrBI CCG'CTC Cuts at: 1394 1823 2079 2452 2870 4557 1394 Size: 429 256 373 418 1687 3507 Fragments arranged by size: 3507 1687 429 418 373 256 BsrDI GCAATG_nn' Cuts at: 65 1248 2622 5165 5339 65 Size: 1183 1374 2543 174 1396 Fragments arranged by size: 2543 1396 1374 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 5314 5501 1700 Size: 110 3504 187 2869 Fragments arranged by size: 3504 2869 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6670 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6670 BssSI C'ACGA_G Cuts at: 2330 2665 2700 4730 5742 2330 Size: 335 35 2030 1012 3258 Fragments arranged by size: 3258 2030 1012 335 35 BstAPI GCAn_nnn'nTGC Cuts at: 794 2808 3362 3659 3784 794 Size: 2014 554 297 125 3680 Fragments arranged by size: 3680 2014 554 297 125 BstBI TT'CG_AA Cuts at: 2007 5474 2007 Size: 3467 3203 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6670 BstXI CCAn_nnnn'nTGG Cuts at: 2843 2843 Size: 6670 BstYI r'GATC_y Cuts at: 1972 2200 3762 4000 4367 4752 4769 6221 6307 Size: 228 1562 238 367 385 17 1452 86 Cuts at: 6307 6319 6665 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1562 1452 385 367 346 238 228 86 17 12 Bsu36I CC'TnA_GG Cuts at: 3174 3174 Size: 6670 BtgI C'CryG_G Cuts at: 513 1065 2022 2358 2931 3912 3943 513 Size: 552 957 336 573 981 31 3240 Fragments arranged by size: 3240 981 957 573 552 336 31 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 3440 487 Size: 683 56 2214 3717 Fragments arranged by size: 3717 2214 683 56 BtsI GCAGTG_nn' Cuts at: 3657 4186 4980 5000 3657 Size: 529 794 20 5327 Fragments arranged by size: 5327 794 529 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6670 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6635 DraI TTT'AAA Cuts at: 3974 3974 Size: 6670 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2609 5677 809 Size: 507 1293 3068 1802 Fragments arranged by size: 3068 1802 1293 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2571 4117 5006 Size: 54 1425 50 275 18 741 1546 889 Cuts at: 5006 6635 8 Size: 1629 43 Fragments arranged by size: 1629 1546 1425 889 741 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 4117 1537 Size: 275 2305 4090 Fragments arranged by size: 4090 2305 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2069 2959 3591 3641 3701 4600 1353 Size: 716 890 632 50 60 899 3423 Fragments arranged by size: 3423 899 890 716 632 60 50 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2844 3548 5257 5631 5777 387 Size: 1064 138 1255 704 1709 374 146 1280 Fragments arranged by size: 1709 1280 1255 1064 704 374 146 138 EcoICRI GAG'CTC Cuts at: 2329 3772 3901 2329 Size: 1443 129 5098 Fragments arranged by size: 5098 1443 129 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2096 2249 2399 2656 2837 3311 3479 Size: 393 464 153 150 257 181 474 168 Cuts at: 3479 3755 3767 3907 4733 5330 6117 6385 1239 Size: 276 12 140 826 597 787 268 1524 Fragments arranged by size: 1524 826 787 597 474 464 393 276 268 257 181 168 153 150 140 12 EcoNI CCTnn'n_nnAGG Cuts at: 3365 3830 3365 Size: 465 6205 EcoO109I rG'GnC_Cy Cuts at: 2087 2641 3099 3159 3336 2087 Size: 554 458 60 177 5421 Fragments arranged by size: 5421 554 458 177 60 EcoRI G'AATT_C Cuts at: 3398 3979 4357 3398 Size: 581 378 5711 Fragments arranged by size: 5711 581 378 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2098 2098 Size: 6670 FspI TGC'GCA Cuts at: 5176 5176 Size: 6670 HaeII r_GCGC'y Cuts at: 1678 3287 3939 5817 1678 Size: 1609 652 1878 2531 Fragments arranged by size: 2531 1878 1609 652 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2099 2131 2251 2283 2936 Size: 32 135 32 527 32 120 32 653 Cuts at: 2936 2968 3151 3183 3185 3217 3431 3452 3463 Size: 32 183 32 2 32 214 21 11 Cuts at: 3463 3484 5311 5343 5385 5417 1373 Size: 21 1827 32 42 32 2626 Fragments arranged by size: 2626 1827 653 527 214 183 135 120 42 32 32 32 32 32 32 32 32 32 21 21 11 2 HincII GTy'rAC Cuts at: 669 1657 1938 4014 4260 669 Size: 988 281 2076 246 3079 Fragments arranged by size: 3079 2076 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6670 HpaI GTT'AAC Cuts at: 4260 4260 Size: 6670 KpnI G_GTAC'C Cuts at: 3995 3995 Size: 6670 MfeI C'AATT_G Cuts at: 4269 4269 Size: 6670 MluI A'CGCG_T Cuts at: 6546 6546 Size: 6670 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2946 3019 5784 5968 1305 Size: 1641 73 2765 184 2007 Fragments arranged by size: 2765 2007 1641 184 73 MscI TGG'CCA Cuts at: 10 64 1489 1832 2573 10 Size: 54 1425 343 741 4107 Fragments arranged by size: 4107 1425 741 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3779 4628 4987 5146 518 Size: 648 2613 849 359 159 2042 Fragments arranged by size: 2613 2042 849 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2422 2799 4086 4763 5911 6156 1606 Size: 816 377 1287 677 1148 245 2120 Fragments arranged by size: 2120 1287 1148 816 677 377 245 NcoI C'CATG_G Cuts at: 513 1065 2022 2931 3912 3943 513 Size: 552 957 909 981 31 3240 Fragments arranged by size: 3240 981 957 909 552 31 NdeI CA'TA_TG Cuts at: 387 387 Size: 6670 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6670 NotI GC'GGCC_GC Cuts at: 4117 4117 Size: 6670 NspI r_CATG'y Cuts at: 1132 1229 4028 5573 1132 Size: 97 2799 1545 2229 Fragments arranged by size: 2799 2229 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 6670 PciI A'CATG_T Cuts at: 5569 5569 Size: 6670 PflMI CCAn_nnn'nTGG Cuts at: 1108 2422 1108 Size: 1314 5356 PfoI T'CCnGG_A Cuts at: 2128 3288 3765 2128 Size: 1160 477 5033 Fragments arranged by size: 5033 1160 477 PmeI GTTT'AAAC Cuts at: 3974 3974 Size: 6670 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4739 4771 6252 6284 4739 Size: 32 1481 32 5125 Fragments arranged by size: 5125 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2641 3099 3159 3336 2641 Size: 458 60 177 5975 Fragments arranged by size: 5975 458 177 60 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6670 PsiI TTA'TAA Cuts at: 4240 4240 Size: 6670 PstI C_TGCA'G Cuts at: 830 2804 3279 3335 3664 3789 3834 4022 830 Size: 1974 475 56 329 125 45 188 3478 Fragments arranged by size: 3478 1974 475 329 188 125 56 45 PvuI CG_AT'CG Cuts at: 2001 2431 2001 Size: 430 6240 PvuII CAG'CTG Cuts at: 2422 2799 2422 Size: 377 6293 SacI G_AGCT'C Cuts at: 2331 3774 3903 2331 Size: 1443 129 5098 Fragments arranged by size: 5098 1443 129 SalI G'TCGA_C Cuts at: 1936 4012 1936 Size: 2076 4594 SapI GCTCTTCn'nnn_ Cuts at: 2069 2069 Size: 6670 SbfI CC_TGCA'GG Cuts at: 3279 4022 3279 Size: 743 5927 ScaI AGT'ACT Cuts at: 4918 6630 4918 Size: 1712 4958 SexAI A'CCwGG_T Cuts at: 3306 3306 Size: 6670 SfcI C'TryA_G Cuts at: 826 1045 2800 3275 3331 3660 3785 3830 4018 Size: 219 1755 475 56 329 125 45 188 Cuts at: 4018 5153 5834 6025 826 Size: 1135 681 191 1471 Fragments arranged by size: 1755 1471 1135 681 475 329 219 191 188 125 56 45 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6670 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6670 SmaI CCC'GGG Cuts at: 1872 2659 3238 3259 3512 3997 1872 Size: 787 579 21 253 485 4545 Fragments arranged by size: 4545 787 579 485 253 21 SmlI C'TyrA_G Cuts at: 820 1017 1943 3902 4774 5675 5937 820 Size: 197 926 1959 872 901 262 1553 Fragments arranged by size: 1959 1553 926 901 872 262 197 SnaBI TAC'GTA Cuts at: 493 3967 4461 493 Size: 3474 494 2702 Fragments arranged by size: 3474 2702 494 SpeI A'CTAG_T Cuts at: 152 152 Size: 6670 SphI G_CATG'C Cuts at: 1132 4028 1132 Size: 2896 3774 SspI AAT'ATT Cuts at: 5 52 4594 5 Size: 47 4542 2081 Fragments arranged by size: 4542 2081 47 StuI AGG'CCT Cuts at: 1517 2567 2653 2882 3179 3959 1517 Size: 1050 86 229 297 780 4228 Fragments arranged by size: 4228 1050 780 297 229 86 StyI C'CwwG_G Cuts at: 513 1065 2022 2217 2568 2828 2931 3111 3912 Size: 552 957 195 351 260 103 180 801 Cuts at: 3912 3943 4109 513 Size: 31 166 3074 Fragments arranged by size: 3074 957 801 552 351 260 195 180 166 103 31 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2168 2937 3230 3422 4697 4714 4867 Size: 1255 588 769 293 192 1275 17 153 Cuts at: 4867 5052 5497 325 Size: 185 445 1498 Fragments arranged by size: 1498 1275 1255 769 588 445 293 192 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 4916 6628 96 Size: 274 80 33 51 1443 2939 1712 138 Fragments arranged by size: 2939 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2912 2944 2970 3002 6630 6662 2912 Size: 32 26 32 3628 32 2920 Fragments arranged by size: 3628 2920 32 32 32 26 Tth111I GACn'n_nGTC Cuts at: 1316 3163 1316 Size: 1847 4823 XbaI T'CTAG_A Cuts at: 4006 4006 Size: 6670 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2581 2581 Size: 6670 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6670 XmaI C'CCGG_G Cuts at: 1870 2657 3236 3257 3510 3995 1870 Size: 787 579 21 253 485 4545 Fragments arranged by size: 4545 787 579 485 253 21 XmnI GAAnn'nnTTC Cuts at: 2304 4799 2304 Size: 2495 4175 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4478 276 Size: 53 83 186 936 2944 2468 Fragments arranged by size: 2944 2468 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SacI SalI SapI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BsiWI BstZ17I DraIII EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PsrI RsrII SacII SanDI SfiI SfoI SrfI SwaI