Result of FASTA (omim) for
pFN21AB8804
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8804, 350 aa
1>>>pF1KB8804 350 - 350 aa - 350 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5419+/-0.000559; mu= 20.8723+/- 0.035
mean_var=122.2270+/-29.991, 0's: 0 Z-trim(106.7): 675 B-trim: 0 in 0/49
Lambda= 0.116009
statistics sampled from 14039 (14804) to 14039 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.508), E-opt: 0.2 (0.174), width: 16
Scan time: 6.440
The best scores are: opt bits E(85289)
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 2317 400.1 3.8e-111
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 2317 400.1 3.8e-111
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 841 153.1 9e-37
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 841 153.1 9e-37
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 841 153.1 9e-37
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 841 153.1 9.1e-37
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 837 152.4 1.4e-36
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 837 152.4 1.4e-36
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 830 151.2 3.2e-36
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 830 151.2 3.2e-36
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 729 134.3 3.6e-31
XP_011531593 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 722 133.1 8.5e-31
XP_005264866 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 722 133.1 8.5e-31
XP_011531592 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 722 133.1 8.5e-31
NP_006555 (OMIM: 605163) C-X-C chemokine receptor ( 342) 722 133.1 8.5e-31
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 718 132.5 1.4e-30
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 718 132.5 1.4e-30
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 708 130.8 4.4e-30
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 708 130.8 4.4e-30
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 708 130.8 4.4e-30
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 708 130.8 4.4e-30
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 708 130.8 4.4e-30
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 708 130.8 4.4e-30
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 685 127.0 6.7e-29
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 684 126.8 7.1e-29
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 684 126.8 7.1e-29
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 684 126.8 7.1e-29
NP_057686 (OMIM: 600240) C-C chemokine receptor ty ( 362) 681 126.3 1e-28
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 679 126.0 1.3e-28
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 676 125.5 1.8e-28
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 669 124.3 4.1e-28
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 661 123.0 1e-27
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 661 123.0 1e-27
NP_000625 (OMIM: 146929,609423) C-X-C chemokine re ( 350) 656 122.1 1.8e-27
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 655 122.0 2.1e-27
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 655 122.0 2.1e-27
XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemo ( 415) 655 122.1 2.2e-27
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 655 122.1 2.2e-27
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 653 121.6 2.6e-27
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 653 121.6 2.6e-27
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 646 120.5 6e-27
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 645 120.3 6.6e-27
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 629 117.6 4.2e-26
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 623 116.6 8.5e-26
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 623 116.6 8.5e-26
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 623 116.6 8.5e-26
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 623 116.6 8.5e-26
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 623 116.6 8.7e-26
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 623 116.6 8.7e-26
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 623 116.7 9.1e-26
>>NP_057641 (OMIM: 606065) atypical chemokine receptor 4 (350 aa)
initn: 2317 init1: 2317 opt: 2317 Z-score: 2116.5 bits: 400.1 E(85289): 3.8e-111
Smith-Waterman score: 2317; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB8 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LNFVSGMQFLACISIDRYVAVTKVPSQSGVGKPCWIICFCVWMAAILLSIPQLVFYTVND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LNFVSGMQFLACISIDRYVAVTKVPSQSGVGKPCWIICFCVWMAAILLSIPQLVFYTVND
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIKISRPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIKISRPLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 VLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIALFHSCLNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIALFHSCLNP
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 ILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTSTFSI
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTSTFSI
310 320 330 340 350
>>NP_848540 (OMIM: 606065) atypical chemokine receptor 4 (350 aa)
initn: 2317 init1: 2317 opt: 2317 Z-score: 2116.5 bits: 400.1 E(85289): 3.8e-111
Smith-Waterman score: 2317; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB8 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LNFVSGMQFLACISIDRYVAVTKVPSQSGVGKPCWIICFCVWMAAILLSIPQLVFYTVND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 LNFVSGMQFLACISIDRYVAVTKVPSQSGVGKPCWIICFCVWMAAILLSIPQLVFYTVND
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIKISRPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 NARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIKISRPLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 VLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIALFHSCLNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 VLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIALFHSCLNP
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 ILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTSTFSI
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 ILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTSTFSI
310 320 330 340 350
>>NP_001288646 (OMIM: 600242) C-C chemokine receptor typ (372 aa)
initn: 810 init1: 456 opt: 841 Z-score: 781.2 bits: 153.1 E(85289): 9e-37
Smith-Waterman score: 845; 39.4% identity (69.8% similar) in 358 aa overlap (3-349:17-371)
10 20 30 40
pF1KB8 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPV
: :.. :: : .: : ::. .: .: :.:::.: :::.
NP_001 MKSVLVVALLVIFQVCLCQDEVTDDYIGDNT---TVDYTLFESLCSKKDVRNFKAWFLPI
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 FLTIVFVIGLAGNSMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWV
. .:. .:: ::..:: : :.:. .: ::.:.:::::::.:.:.:::::: .:...::
NP_001 MYSIICFVGLLGNGLVVLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWV
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 LGKIMCKITSALYTLNFVSGMQFLACISIDRYVAVTKVPS----QSGVGKPCWIICFCVW
.: .::. :.: ..: ::: .: :::::::::.... : .. : . : .:
NP_001 FGVHFCKLIFAIYKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIW
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 MAAILLSIPQLVFYTVNDNARCIPIFPRYLGTSMKALI--QMLEICIGFVVPFLIMGVCY
. : .::::.:.. .. .. . . ..:.: :. .. :::.::.: :. ::
NP_001 ILATVLSIPELLYSDLQRSSSEQAMRCSLITEHVEAFITIQVAQMVIGFLVPLLAMSFCY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 FITARTLMKMPNIKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKR
.. :::.. :.. .. .::...::.:::: ::::: : . ... . ..:..::.
NP_001 LVIIRTLLQARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQ
240 250 260 270 280 290
290 300 310 320 330
pF1KB8 MDIAIQVTESIALFHSCLNPILYVFMGASFKNYVMKVAKKYG--SWRRQRQ--SVEEFPF
..:: .:: :.: . :.::.::.:.:..:.: ..:. : : : .. :: : ...
NP_001 LNIAYDVTYSLACVRCCVNPFLYAFIGVKFRNDLFKLFKDLGCLSQEQLRQWSSCRHIRR
300 310 320 330 340 350
340 350
pF1KB8 DSEG-PTEPTSTFSI
.: . .: :.:::
NP_001 SSMSVEAETTTTFSP
360 370
>>NP_001288645 (OMIM: 600242) C-C chemokine receptor typ (372 aa)
initn: 810 init1: 456 opt: 841 Z-score: 781.2 bits: 153.1 E(85289): 9e-37
Smith-Waterman score: 845; 39.4% identity (69.8% similar) in 358 aa overlap (3-349:17-371)
10 20 30 40
pF1KB8 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPV
: :.. :: : .: : ::. .: .: :.:::.: :::.
NP_001 MKSVLVVALLVIFQVCLCQDEVTDDYIGDNT---TVDYTLFESLCSKKDVRNFKAWFLPI
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 FLTIVFVIGLAGNSMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWV
. .:. .:: ::..:: : :.:. .: ::.:.:::::::.:.:.:::::: .:...::
NP_001 MYSIICFVGLLGNGLVVLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWV
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 LGKIMCKITSALYTLNFVSGMQFLACISIDRYVAVTKVPS----QSGVGKPCWIICFCVW
.: .::. :.: ..: ::: .: :::::::::.... : .. : . : .:
NP_001 FGVHFCKLIFAIYKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIW
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 MAAILLSIPQLVFYTVNDNARCIPIFPRYLGTSMKALI--QMLEICIGFVVPFLIMGVCY
. : .::::.:.. .. .. . . ..:.: :. .. :::.::.: :. ::
NP_001 ILATVLSIPELLYSDLQRSSSEQAMRCSLITEHVEAFITIQVAQMVIGFLVPLLAMSFCY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 FITARTLMKMPNIKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKR
.. :::.. :.. .. .::...::.:::: ::::: : . ... . ..:..::.
NP_001 LVIIRTLLQARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQ
240 250 260 270 280 290
290 300 310 320 330
pF1KB8 MDIAIQVTESIALFHSCLNPILYVFMGASFKNYVMKVAKKYG--SWRRQRQ--SVEEFPF
..:: .:: :.: . :.::.::.:.:..:.: ..:. : : : .. :: : ...
NP_001 LNIAYDVTYSLACVRCCVNPFLYAFIGVKFRNDLFKLFKDLGCLSQEQLRQWSSCRHIRR
300 310 320 330 340 350
340 350
pF1KB8 DSEG-PTEPTSTFSI
.: . .: :.:::
NP_001 SSMSVEAETTTTFSP
360 370
>>NP_001288647 (OMIM: 600242) C-C chemokine receptor typ (372 aa)
initn: 810 init1: 456 opt: 841 Z-score: 781.2 bits: 153.1 E(85289): 9e-37
Smith-Waterman score: 845; 39.4% identity (69.8% similar) in 358 aa overlap (3-349:17-371)
10 20 30 40
pF1KB8 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPV
: :.. :: : .: : ::. .: .: :.:::.: :::.
NP_001 MKSVLVVALLVIFQVCLCQDEVTDDYIGDNT---TVDYTLFESLCSKKDVRNFKAWFLPI
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 FLTIVFVIGLAGNSMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWV
. .:. .:: ::..:: : :.:. .: ::.:.:::::::.:.:.:::::: .:...::
NP_001 MYSIICFVGLLGNGLVVLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWV
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 LGKIMCKITSALYTLNFVSGMQFLACISIDRYVAVTKVPS----QSGVGKPCWIICFCVW
.: .::. :.: ..: ::: .: :::::::::.... : .. : . : .:
NP_001 FGVHFCKLIFAIYKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIW
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 MAAILLSIPQLVFYTVNDNARCIPIFPRYLGTSMKALI--QMLEICIGFVVPFLIMGVCY
. : .::::.:.. .. .. . . ..:.: :. .. :::.::.: :. ::
NP_001 ILATVLSIPELLYSDLQRSSSEQAMRCSLITEHVEAFITIQVAQMVIGFLVPLLAMSFCY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 FITARTLMKMPNIKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKR
.. :::.. :.. .. .::...::.:::: ::::: : . ... . ..:..::.
NP_001 LVIIRTLLQARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQ
240 250 260 270 280 290
290 300 310 320 330
pF1KB8 MDIAIQVTESIALFHSCLNPILYVFMGASFKNYVMKVAKKYG--SWRRQRQ--SVEEFPF
..:: .:: :.: . :.::.::.:.:..:.: ..:. : : : .. :: : ...
NP_001 LNIAYDVTYSLACVRCCVNPFLYAFIGVKFRNDLFKLFKDLGCLSQEQLRQWSSCRHIRR
300 310 320 330 340 350
340 350
pF1KB8 DSEG-PTEPTSTFSI
.: . .: :.:::
NP_001 SSMSVEAETTTTFSP
360 370
>>NP_001829 (OMIM: 600242) C-C chemokine receptor type 7 (378 aa)
initn: 810 init1: 456 opt: 841 Z-score: 781.1 bits: 153.1 E(85289): 9.1e-37
Smith-Waterman score: 845; 39.4% identity (69.8% similar) in 358 aa overlap (3-349:23-377)
10 20 30 40
pF1KB8 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFA
: :.. :: : .: : ::. .: .: :.:::.:
NP_001 MDLGKPMKSVLVVALLVIFQVCLCQDEVTDDYIGDNT---TVDYTLFESLCSKKDVRNFK
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 KVFLPVFLTIVFVIGLAGNSMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVN
:::.. .:. .:: ::..:: : :.:. .: ::.:.:::::::.:.:.:::::: .
NP_001 AWFLPIMYSIICFVGLLGNGLVVLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS
60 70 80 90 100 110
110 120 130 140 150
pF1KB8 AVHGWVLGKIMCKITSALYTLNFVSGMQFLACISIDRYVAVTKVPS----QSGVGKPCWI
:...::.: .::. :.: ..: ::: .: :::::::::.... : .. : .
NP_001 AAKSWVFGVHFCKLIFAIYKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKL
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 ICFCVWMAAILLSIPQLVFYTVNDNARCIPIFPRYLGTSMKALI--QMLEICIGFVVPFL
: .:. : .::::.:.. .. .. . . ..:.: :. .. :::.::.:
NP_001 SCVGIWILATVLSIPELLYSDLQRSSSEQAMRCSLITEHVEAFITIQVAQMVIGFLVPLL
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 IMGVCYFITARTLMKMPNIKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITS
:. ::.. :::.. :.. .. .::...::.:::: ::::: : . ... . ..
NP_001 AMSFCYLVIIRTLLQARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSST
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 CNMSKRMDIAIQVTESIALFHSCLNPILYVFMGASFKNYVMKVAKKYG--SWRRQRQ--S
:..::...:: .:: :.: . :.::.::.:.:..:.: ..:. : : : .. :: :
NP_001 CELSKQLNIAYDVTYSLACVRCCVNPFLYAFIGVKFRNDLFKLFKDLGCLSQEQLRQWSS
300 310 320 330 340 350
340 350
pF1KB8 VEEFPFDSEG-PTEPTSTFSI
... .: . .: :.:::
NP_001 CRHIRRSSMSVEAETTTTFSP
360 370
>>XP_011531614 (OMIM: 604738) PREDICTED: C-C chemokine r (369 aa)
initn: 808 init1: 380 opt: 837 Z-score: 777.6 bits: 152.4 E(85289): 1.4e-36
Smith-Waterman score: 837; 36.6% identity (68.9% similar) in 325 aa overlap (6-322:12-336)
10 20 30 40 50
pF1KB8 MALEQNQSTDYYYEE-NEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFV
:.. :: : . :. ... .. : :..::.::. ::: . .::.
XP_011 MTPTDFTSPIPNMADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 IGLAGNSMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCK
.: :::.:. .: : . .: ::...::::.::::.: ::::::. :. : . .:::
XP_011 VGALGNSLVILVYWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCK
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 ITSALYTLNFVSGMQFLACISIDRYVAVTKVPSQSGVGKP----CWIICFCVWMAAILLS
.....: .:: : . .. :::.:::.:.... . ..:: .:. : :
XP_011 VVNSMYKMNFYSCVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALC
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 IPQLVFYTVNDN---ARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITART
::.... .... : : ..: .:..:. . :.. .:: .::..:. :: : .:
XP_011 IPEILYSQIKEESGIAICTMVYPSDESTKLKSAVLTLKVILGFFLPFVVMACCYTIIIHT
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 LMKMPNIKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQ
:.. . . . ::: .::. ::...:.::: . . ..:: .:..: .: .:: .:
XP_011 LIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB8 VTESIALFHSCLNPILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTS
::..::.:::::::.::::.: :. ..:. :. :
XP_011 VTQTIAFFHSCLNPVLYVFVGERFRRDLVKTLKNLGCISQAQWVSFTRREGSLKLSSMLL
310 320 330 340 350 360
350
pF1KB8 TFSI
XP_011 ETTSGALSL
>>NP_112477 (OMIM: 604738) C-C chemokine receptor type 9 (369 aa)
initn: 808 init1: 380 opt: 837 Z-score: 777.6 bits: 152.4 E(85289): 1.4e-36
Smith-Waterman score: 837; 36.6% identity (68.9% similar) in 325 aa overlap (6-322:12-336)
10 20 30 40 50
pF1KB8 MALEQNQSTDYYYEE-NEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFV
:.. :: : . :. ... .. : :..::.::. ::: . .::.
NP_112 MTPTDFTSPIPNMADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 IGLAGNSMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCK
.: :::.:. .: : . .: ::...::::.::::.: ::::::. :. : . .:::
NP_112 VGALGNSLVILVYWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCK
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 ITSALYTLNFVSGMQFLACISIDRYVAVTKVPSQSGVGKP----CWIICFCVWMAAILLS
.....: .:: : . .. :::.:::.:.... . ..:: .:. : :
NP_112 VVNSMYKMNFYSCVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALC
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 IPQLVFYTVNDN---ARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITART
::.... .... : : ..: .:..:. . :.. .:: .::..:. :: : .:
NP_112 IPEILYSQIKEESGIAICTMVYPSDESTKLKSAVLTLKVILGFFLPFVVMACCYTIIIHT
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 LMKMPNIKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQ
:.. . . . ::: .::. ::...:.::: . . ..:: .:..: .: .:: .:
NP_112 LIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQ
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB8 VTESIALFHSCLNPILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTS
::..::.:::::::.::::.: :. ..:. :. :
NP_112 VTQTIAFFHSCLNPVLYVFVGERFRRDLVKTLKNLGCISQAQWVSFTRREGSLKLSSMLL
310 320 330 340 350 360
350
pF1KB8 TFSI
NP_112 ETTSGALSL
>>NP_001243298 (OMIM: 604738) C-C chemokine receptor typ (357 aa)
initn: 808 init1: 380 opt: 830 Z-score: 771.4 bits: 151.2 E(85289): 3.2e-36
Smith-Waterman score: 830; 36.8% identity (68.8% similar) in 321 aa overlap (10-322:4-324)
10 20 30 40 50
pF1KB8 MALEQNQSTDYYYEE-NEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGN
:: : . :. ... .. : :..::.::. ::: . .::..: ::
NP_001 MADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGN
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 SMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALY
:.:. .: : . .: ::...::::.::::.: ::::::. :. : . .:::.....:
NP_001 SLVILVYWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 TLNFVSGMQFLACISIDRYVAVTKVPSQSGVGKP----CWIICFCVWMAAILLSIPQLVF
.:: : . .. :::.:::.:.... . ..:: .:. : : ::....
NP_001 KMNFYSCVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 YTVNDN---ARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPN
.... : : ..: .:..:. . :.. .:: .::..:. :: : .::.. .
NP_001 SQIKEESGIAICTMVYPSDESTKLKSAVLTLKVILGFFLPFVVMACCYTIIIHTLIQAKK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 IKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIA
. . ::: .::. ::...:.::: . . ..:: .:..: .: .:: .:::..::
NP_001 SSKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQVTQTIA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 LFHSCLNPILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTSTFSI
.:::::::.::::.: :. ..:. :. :
NP_001 FFHSCLNPVLYVFVGERFRRDLVKTLKNLGCISQAQWVSFTRREGSLKLSSMLLETTSGA
300 310 320 330 340 350
>>NP_006632 (OMIM: 604738) C-C chemokine receptor type 9 (357 aa)
initn: 808 init1: 380 opt: 830 Z-score: 771.4 bits: 151.2 E(85289): 3.2e-36
Smith-Waterman score: 830; 36.8% identity (68.8% similar) in 321 aa overlap (10-322:4-324)
10 20 30 40 50
pF1KB8 MALEQNQSTDYYYEE-NEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGN
:: : . :. ... .. : :..::.::. ::: . .::..: ::
NP_006 MADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGN
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 SMVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALY
:.:. .: : . .: ::...::::.::::.: ::::::. :. : . .:::.....:
NP_006 SLVILVYWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 TLNFVSGMQFLACISIDRYVAVTKVPSQSGVGKP----CWIICFCVWMAAILLSIPQLVF
.:: : . .. :::.:::.:.... . ..:: .:. : : ::....
NP_006 KMNFYSCVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 YTVNDN---ARCIPIFPRYLGTSMKALIQMLEICIGFVVPFLIMGVCYFITARTLMKMPN
.... : : ..: .:..:. . :.. .:: .::..:. :: : .::.. .
NP_006 SQIKEESGIAICTMVYPSDESTKLKSAVLTLKVILGFFLPFVVMACCYTIIIHTLIQAKK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 IKISRPLKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSCNMSKRMDIAIQVTESIA
. . ::: .::. ::...:.::: . . ..:: .:..: .: .:: .:::..::
NP_006 SSKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQVTQTIA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 LFHSCLNPILYVFMGASFKNYVMKVAKKYGSWRRQRQSVEEFPFDSEGPTEPTSTFSI
.:::::::.::::.: :. ..:. :. :
NP_006 FFHSCLNPVLYVFVGERFRRDLVKTLKNLGCISQAQWVSFTRREGSLKLSSMLLETTSGA
300 310 320 330 340 350
350 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:40:28 2016 done: Sat Nov 5 09:40:29 2016
Total Scan time: 6.440 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]