Result of FASTA (ccds) for
pFN21AA1273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1273, 602 aa
1>>>pF1KA1273 602 - 602 aa - 602 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8684+/-0.00124; mu= 3.3986+/- 0.073
mean_var=251.0126+/-49.892, 0's: 0 Z-trim(109.2): 53 B-trim: 17 in 1/49
Lambda= 0.080952
statistics sampled from 10704 (10744) to 10704 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.33), width: 16
Scan time: 3.260
The best scores are: opt bits E(32554)
CCDS30.1 ATAD3B gene_id:83858|Hs108|chr1 ( 648) 3652 440.4 3.4e-123
CCDS31.1 ATAD3A gene_id:55210|Hs108|chr1 ( 634) 3187 386.1 7.4e-107
CCDS53260.1 ATAD3A gene_id:55210|Hs108|chr1 ( 507) 2894 351.8 1.3e-96
CCDS53259.1 ATAD3A gene_id:55210|Hs108|chr1 ( 586) 2894 351.8 1.4e-96
CCDS44039.1 ATAD3C gene_id:219293|Hs108|chr1 ( 411) 2097 258.6 1.1e-68
>>CCDS30.1 ATAD3B gene_id:83858|Hs108|chr1 (648 aa)
initn: 3652 init1: 3652 opt: 3652 Z-score: 2325.3 bits: 440.4 E(32554): 3.4e-123
Smith-Waterman score: 3652; 99.8% identity (100.0% similar) in 556 aa overlap (47-602:93-648)
20 30 40 50 60 70
pF1KA1 SLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEE
:.::::::::::::::::::::::::::::
CCDS30 RELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEE
70 80 90 100 110 120
80 90 100 110 120 130
pF1KA1 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
130 140 150 160 170 180
140 150 160 170 180 190
pF1KA1 KNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVT
190 200 210 220 230 240
200 210 220 230 240 250
pF1KA1 DRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQ
250 260 270 280 290 300
260 270 280 290 300 310
pF1KA1 VSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFA
310 320 330 340 350 360
320 330 340 350 360 370
pF1KA1 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRAT
370 380 390 400 410 420
380 390 400 410 420 430
pF1KA1 EEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERE
430 440 450 460 470 480
440 450 460 470 480 490
pF1KA1 RLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
490 500 510 520 530 540
500 510 520 530 540 550
pF1KA1 ASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDP
550 560 570 580 590 600
560 570 580 590 600
pF1KA1 SYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL
610 620 630 640
>>CCDS31.1 ATAD3A gene_id:55210|Hs108|chr1 (634 aa)
initn: 3205 init1: 3179 opt: 3187 Z-score: 2031.9 bits: 386.1 E(32554): 7.4e-107
Smith-Waterman score: 3187; 93.5% identity (97.8% similar) in 536 aa overlap (1-536:95-630)
10 20 30
pF1KA1 MQLEALNLLHTLVWARSLCRAGAVQTQERL
:.::::.:::::::: ::::::::::::::
CCDS31 LEHSRYAKDALNLAQMQEQTLQLEQQSKLKMRLEALSLLHTLVWAWSLCRAGAVQTQERL
70 80 90 100 110 120
40 50 60 70 80 90
pF1KA1 SGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKL
130 140 150 160 170 180
100 110 120 130 140 150
pF1KA1 ARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVETEARAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS31 ARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVEAEARAR
190 200 210 220 230 240
160 170 180 190 200 210
pF1KA1 AKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTL
:::::::::::::::::::.::::::::::::::::::::::::::: ::::::::::::
CCDS31 AKAERENADIIREQIRLKAAEHRQTVLESIRTAGTLFGEGFRAFVTDWDKVTATVAGLTL
250 260 270 280 290 300
220 230 240 250 260 270
pF1KA1 LAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQVSRRLLSRPQDVLE
:::::::::::: :.::::::::::::::::::::::::::::::::::::::::::.::
CCDS31 LAVGVYSAKNATLVAGRFIEARLGKPSLVRETSRITVLEALRHPIQVSRRLLSRPQDALE
310 320 330 340 350 360
280 290 300 310 320 330
pF1KA1 GVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIM
::::::::::::::::::::::::::.:::.::.::::::::::::::::::::::::::
CCDS31 GVVLSPSLEARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYAIM
370 380 390 400 410 420
340 350 360 370 380 390
pF1KA1 TGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAF
:::::::::::::::::::::::::::::::::.:::::::::::::.::.:::::::::
CCDS31 TGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAF
430 440 450 460 470 480
400 410 420 430 440 450
pF1KA1 LYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKP
::. :::::::::::::: ::::: :::.::. ::::::: :::::::::..::. ::::
CCDS31 LYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERERLVRMYFDKYVLKP
490 500 510 520 530 540
460 470 480 490 500 510
pF1KA1 ATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAYASKDGVLTEAMMDA
:::::.::::::::::::::::::::::::::::::::::::::::::.::::::::::.
CCDS31 ATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAYASEDGVLTEAMMDT
550 560 570 580 590 600
520 530 540 550 560 570
pF1KA1 CVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDPSYPCLAGPCTFRIC
:::::::..::: :::::::::: :
CCDS31 RVQDAVQQHQQKMCWLKAEGPGRGDEPSPS
610 620 630
>>CCDS53260.1 ATAD3A gene_id:55210|Hs108|chr1 (507 aa)
initn: 2913 init1: 2887 opt: 2894 Z-score: 1848.3 bits: 351.8 E(32554): 1.3e-96
Smith-Waterman score: 2894; 93.3% identity (97.8% similar) in 490 aa overlap (47-536:14-503)
20 30 40 50 60 70
pF1KA1 SLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEE
:.::::::::::::::::::::::::::::
CCDS53 MQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEE
10 20 30 40
80 90 100 110 120 130
pF1KA1 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
50 60 70 80 90 100
140 150 160 170 180 190
pF1KA1 KNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVT
::::::::.::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS53 KNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLESIRTAGTLFGEGFRAFVT
110 120 130 140 150 160
200 210 220 230 240 250
pF1KA1 DRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQ
: :::::::::::::::::::::::: :.:::::::::::::::::::::::::::::::
CCDS53 DWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPSLVRETSRITVLEALRHPIQ
170 180 190 200 210 220
260 270 280 290 300 310
pF1KA1 VSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFA
:::::::::::.::::::::::::::::::::::::::::.:::.::.::::::::::::
CCDS53 VSRRLLSRPQDALEGVVLSPSLEARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFA
230 240 250 260 270 280
320 330 340 350 360 370
pF1KA1 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRAT
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRAT
290 300 310 320 330 340
380 390 400 410 420 430
pF1KA1 EEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERE
:.::.:::::::::::. :::::::::::::: ::::: :::.::. ::::::: :::::
CCDS53 EKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERE
350 360 370 380 390 400
440 450 460 470 480 490
pF1KA1 RLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
::::..::. :::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS53 RLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
410 420 430 440 450 460
500 510 520 530 540 550
pF1KA1 ASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDP
::.::::::::::. :::::::..::: :::::::::: :
CCDS53 ASEDGVLTEAMMDTRVQDAVQQHQQKMCWLKAEGPGRGDEPSPS
470 480 490 500
560 570 580 590 600
pF1KA1 SYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL
>>CCDS53259.1 ATAD3A gene_id:55210|Hs108|chr1 (586 aa)
initn: 2913 init1: 2887 opt: 2894 Z-score: 1847.5 bits: 351.8 E(32554): 1.4e-96
Smith-Waterman score: 2894; 93.3% identity (97.8% similar) in 490 aa overlap (47-536:93-582)
20 30 40 50 60 70
pF1KA1 SLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRKTLSEE
:.::::::::::::::::::::::::::::
CCDS53 RELEHSRYAKDALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRAQAEERRKTLSEE
70 80 90 100 110 120
80 90 100 110 120 130
pF1KA1 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATVEREMELRH
130 140 150 160 170 180
140 150 160 170 180 190
pF1KA1 KNEMLRVETEARARAKAERENADIIREQIRLKASEHRQTVLESIRTAGTLFGEGFRAFVT
::::::::.::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS53 KNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLESIRTAGTLFGEGFRAFVT
190 200 210 220 230 240
200 210 220 230 240 250
pF1KA1 DRDKVTATVAGLTLLAVGVYSAKNATAVTGRFIEARLGKPSLVRETSRITVLEALRHPIQ
: :::::::::::::::::::::::: :.:::::::::::::::::::::::::::::::
CCDS53 DWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPSLVRETSRITVLEALRHPIQ
250 260 270 280 290 300
260 270 280 290 300 310
pF1KA1 VSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFA
:::::::::::.::::::::::::::::::::::::::::.:::.::.::::::::::::
CCDS53 VSRRLLSRPQDALEGVVLSPSLEARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFA
310 320 330 340 350 360
320 330 340 350 360 370
pF1KA1 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRAT
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS53 KKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRAT
370 380 390 400 410 420
380 390 400 410 420 430
pF1KA1 EEISKDLRATLNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERE
:.::.:::::::::::. :::::::::::::: ::::: :::.::. ::::::: :::::
CCDS53 EKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERE
430 440 450 460 470 480
440 450 460 470 480 490
pF1KA1 RLVRLHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
::::..::. :::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS53 RLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAY
490 500 510 520 530 540
500 510 520 530 540 550
pF1KA1 ASKDGVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDP
::.::::::::::. :::::::..::: :::::::::: :
CCDS53 ASEDGVLTEAMMDTRVQDAVQQHQQKMCWLKAEGPGRGDEPSPS
550 560 570 580
560 570 580 590 600
pF1KA1 SYPCLAGPCTFRICSWMGTGLCPGPLSPRMSCGGGRPFCPPGHPLL
>>CCDS44039.1 ATAD3C gene_id:219293|Hs108|chr1 (411 aa)
initn: 1667 init1: 1603 opt: 2097 Z-score: 1346.4 bits: 258.6 E(32554): 1.1e-68
Smith-Waterman score: 2097; 82.7% identity (91.9% similar) in 405 aa overlap (137-540:12-411)
110 120 130 140 150 160
pF1KA1 EENLRKQEESVQKQEAMRRATVEREMELRHKNEMLRVETEARARAKAERENADIIREQIR
... :..: ... . . : :. :.: .
CCDS44 MSKDALNLAQMQEQTLQLEQQSKLK---QLVNEDL-RKQ-E
10 20 30
170 180 190 200 210 220
pF1KA1 LKASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG
....:.:: :::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG
40 50 60 70 80 90
230 240 250 260 270 280
pF1KA1 RFIEARLGKPSLVRETSRITVLEALRHPIQ-VSRRLLSRPQDVLEGVVLSPSLEARVRDI
:.:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS44 RYIEARLGKPSLVRETSRITVLEALRHPIQQVSRRLLSRPQDVLEGVVLSPSLEARVRDI
100 110 120 130 140 150
290 300 310 320 330 340
pF1KA1 AIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTA
:: ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTA
160 170 180 190 200 210
350 360 370 380 390 400
pF1KA1 MHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAFLYHMGQHSNKFMLVL
::::::::::::::::::.:::::::::::::.::.:::::::::::. :::::::::.:
CCDS44 MHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHSNKFMLIL
220 230 240 250 260 270
410 420 430 440 450 460
pF1KA1 ASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKPATEGKRRLKLAQFDY
:: ::::: :::. :::::::::: :::: ::::..... :::::::::::::::::::
CCDS44 ASCHPEQFDWAINACIDVMVHFDLPGQEERARLVRMYLNEYVLKPATEGKRRLKLAQFDY
280 290 300 310 320 330
470 480 490 500 510 520
pF1KA1 GRKCSEVARLTEGMSGREIAQLAVSWQATAYASKDGVLTEAMMDACVQDAVQQYRQKMRW
:::: :.:::::::: :.::::::::::::::::::::::::::::::: :::..: :::
CCDS44 GRKCLEIARLTEGMSCRKIAQLAVSWQATAYASKDGVLTEAMMDACVQDFVQQHQQMMRW
340 350 360 370 380 390
530 540 550 560 570 580
pF1KA1 LKAEGPGRGVEHPLSGVQGETLTSWSLATDPSYPCLAGPCTFRICSWMGTGLCPGPLSPR
::.: :: :.: :
CCDS44 LKGERPGPEDEQPSS
400 410
602 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:54:07 2016 done: Wed Nov 2 20:54:07 2016
Total Scan time: 3.260 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]