FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1238, 386 aa
  1>>>pF1KA1238 386 - 386 aa - 386 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2193+/-0.000838; mu= 11.6812+/- 0.051
 mean_var=68.0441+/-13.387, 0's: 0 Z-trim(107.1): 12  B-trim: 0 in 0/52
 Lambda= 0.155482
 statistics sampled from 9388 (9398) to 9388 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.289), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS41748.1 RIMKLB gene_id:57494|Hs108|chr12       ( 386) 2560 583.1 1.4e-166
CCDS466.2 RIMKLA gene_id:284716|Hs108|chr1         ( 391) 1751 401.7 6.1e-112


>>CCDS41748.1 RIMKLB gene_id:57494|Hs108|chr12            (386 aa)
 initn: 2560 init1: 2560 opt: 2560  Z-score: 3104.1  bits: 583.1 E(32554): 1.4e-166
Smith-Waterman score: 2560; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)

               10        20        30        40        50        60
pF1KA1 MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 RINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 DYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSSVDSDPESTER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSSVDSDPESTER
              310       320       330       340       350       360

              370       380      
pF1KA1 ELLTKLPGGLFNMNQLLANEIKLLVD
       ::::::::::::::::::::::::::
CCDS41 ELLTKLPGGLFNMNQLLANEIKLLVD
              370       380      

>>CCDS466.2 RIMKLA gene_id:284716|Hs108|chr1              (391 aa)
 initn: 1774 init1: 1682 opt: 1751  Z-score: 2123.2  bits: 401.7 E(32554): 6.1e-112
Smith-Waterman score: 1768; 66.6% identity (85.1% similar) in 395 aa overlap (1-383:1-390)

               10        20        30        40        50        60
pF1KA1 MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGL
       :::    .::::::::::::::: .:::::. .: :... ::::.::....::  :.:::
CCDS46 MCS----QLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQIAVTIVGGHLGL
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KA1 RINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQ
       ..: . .:..:.::.:::::: :::::::::::::::.::::.::::.::::.:::::::
CCDS46 QLNQKALTTFPDVVLVRVPTPSVQSDSDITVLRHLEKLGCRLVNRPQSILNCINKFWTFQ
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KA1 ELAGHGVPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADL
       ::::::::.::::::::::.:.::::::: : .:.:::.::::::::::::::::::.:.
CCDS46 ELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDI
        120       130       140       150       160       170      

              190       200       210       220       230       240
pF1KA1 SHLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCS
        :::::..:::::::::::::.:.::.::::.:.:.::::::::::::::::::::. : 
CCDS46 CHLIRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCSLGGVGVKCP
        180       190       200       210       220       230      

              250       260       270       280       290       300
pF1KA1 LSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIA
       :.::::::::::::::::: ::::::. ::::: ::::::::::.:::.::::::.::::
CCDS46 LTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFVVCEANANVGFLAFDQACNLDVGGIIA
        240       250       260       270       280       290      

              310       320       330          340       350       
pF1KA1 DYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPA---STAVDNMSASSSSVDSDPE-
       ::. ::::. : : .:..:  .:.  : .::.    :   . .: .....:.: .:.:: 
CCDS46 DYTMSLLPN-RQTGKMAVLPGLSSPREKNEPDGCASAQGVAESVYTINSGSTSSESEPEL
        300        310       320       330       340       350     

                360       370       380      
pF1KA1 --------STERELLTKLPGGLFNMNQLLANEIKLLVD
               ::     . ::   .:.:. .:.:.::   
CCDS46 GEIRDSSASTMGAPPSMLPEPGYNINNRIASELKLK  
         360       370       380       390   




386 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:50:10 2016 done: Wed Nov  2 20:50:11 2016
 Total Scan time:  2.500 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]