Result of FASTA (ccds) for
pFN21AA1012
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1012, 1435 aa
1>>>pF1KA1012 1435 - 1435 aa - 1435 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9193+/-0.00108; mu= 19.6593+/- 0.065
mean_var=69.0955+/-13.750, 0's: 0 Z-trim(103.1): 23 B-trim: 0 in 0/51
Lambda= 0.154294
statistics sampled from 7228 (7232) to 7228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.222), width: 16
Scan time: 4.490
The best scores are: opt bits E(32554)
CCDS11901.1 TRAPPC8 gene_id:22878|Hs108|chr18 (1435) 9463 2116.5 0
>>CCDS11901.1 TRAPPC8 gene_id:22878|Hs108|chr18 (1435 aa)
initn: 9463 init1: 9463 opt: 9463 Z-score: 11370.6 bits: 2116.5 E(32554): 0
Smith-Waterman score: 9463; 99.9% identity (99.9% similar) in 1435 aa overlap (1-1435:1-1435)
10 20 30 40 50 60
pF1KA1 MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 QLHVIKNLKIAVSNIVTQPPQPGAIRKLLNDVVSGSQPAEGLVANVITAGDYDLNISATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLHVIKNLKIAVSNIVTQPPQPGAIRKLLNDVVSGSQPAEGLVANVITAGDYDLNISATT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PWFESYRETFLQSMPASDHEFLNHYLACMLVASSSEAEPVEQFSKLSQEQHRIQHNSDYS
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS11 PWFESYRETFLQSMPALDHEFLNHYLACMLVASSSEAEPVEQFSKLSQEQHRIQHNSDYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 YPKWFIPNTLKYYVLLHDVSAGDEQRAESIYEEMKQKYGTQGCYLLKINSRTSNRASDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPKWFIPNTLKYYVLLHDVSAGDEQRAESIYEEMKQKYGTQGCYLLKINSRTSNRASDEQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 IPDPWSQYLQKNSIQNQESYEDGPCTITSNKNSDNNLLSLDGLDNEVKDGLPNNFRAHPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPDPWSQYLQKNSIQNQESYEDGPCTITSNKNSDNNLLSLDGLDNEVKDGLPNNFRAHPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 QLEQSSDPSNSIDGPDHLRSASSLHETKKGNTGIIHGACLTLTDHDRIRQFIQEFTFRGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLEQSSDPSNSIDGPDHLRSASSLHETKKGNTGIIHGACLTLTDHDRIRQFIQEFTFRGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 LPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINDLKNTSGLLYPPEAPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINDLKNTSGLLYPPEAPE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 LQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 PAHYMDTAIQTYRDICKNMVLAERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PAHYMDTAIQTYRDICKNMVLAERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSAL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 LLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 DHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 PLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHVSLDQEYDSESSQQWRELEEQVVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHVSLDQEYDSESSQQWRELEEQVVSV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 VNKGVIPSNFHPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VNKGVIPSNFHPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 HPKDFSGKDNEEVKQLVTSEPEMIGAEVISEFLINGEESKVARLKLFPHHIGELHILGVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HPKDFSGKDNEEVKQLVTSEPEMIGAEVISEFLINGEESKVARLKLFPHHIGELHILGVV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 YNLGTIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YNLGTIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPD
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 RRLDPIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RRLDPIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTF
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 GGNTAVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GGNTAVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 DTVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DTVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLN
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 VRATVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRATVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 SENKDAKLASREKGKFCFKAIRCEKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFY
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SENKDTKLASREKGKFCFKAIRCEKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFY
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA1 RSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIVILWKAYVVEDSKQLILEGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIVILWKAYVVEDSKQLILEGQ
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA1 HHVILRTIGKEAFSYPQKQEPPEMELLKFFRPENITVSSRPSVEQLSSLIKTSLHYPESF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HHVILRTIGKEAFSYPQKQEPPEMELLKFFRPENITVSSRPSVEQLSSLIKTSLHYPESF
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA1 NHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALEIHGSFTWLGQTQYKLQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALEIHGSFTWLGQTQYKLQL
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430
pF1KA1 KSQEIHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIISNV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KSQEIHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIISNV
1390 1400 1410 1420 1430
1435 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 20:15:38 2016 done: Wed Nov 2 20:15:38 2016
Total Scan time: 4.490 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]